mRNA_H-elongata_contig145764.3127.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145764.3127.1
Unique NamemRNA_H-elongata_contig145764.3127.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig145764.3127.1 vs. uniprot
Match: D8LF56_ECTSI (Phosphoglycerate mutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF56_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.160e-32
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 RKGIIQGQENSDLTPLGIDQAAATATRLRGNKYWQVHASDLVRACRTAEIILEEHDGPIPKKSELLREFRLGVQEGLPRGTTW 249
            R+GIIQG ++ DLTP+GI+QA ATA RLRGN YWQ ++SDL RA  TAEIILEEH G   +K+ LLREF LG QEGLPRGTTW
Sbjct:   20 REGIIQGHQDYDLTPIGINQAVATAIRLRGNTYWQTYSSDLTRASHTAEIILEEHAGANLRKTPLLREFALGAQEGLPRGTTW 102          
BLAST of mRNA_H-elongata_contig145764.3127.1 vs. uniprot
Match: A0A6H5JJ63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ63_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.860e-32
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 RKGIIQGQENSDLTPLGIDQAAATATRLRGNKYWQVHASDLVRACRTAEIILEEHDGPIPKKSELLREFRLGVQEGLPRGTTW 249
            R+GIIQG ++ DLTP+GI+QA ATA RLRGN YW+ ++SDL RA  TAEIILEEH G   +K+ LLREF LG QEGLPRGTTW
Sbjct:   34 REGIIQGHQDYDLTPIGINQAVATAIRLRGNTYWRTYSSDLTRASHTAEIILEEHPGANLRKTPLLREFALGAQEGLPRGTTW 116          
BLAST of mRNA_H-elongata_contig145764.3127.1 vs. uniprot
Match: UPI0020081D1F (phosphoglycerate mutase-like protein n=1 Tax=Antrodia serialis TaxID=139415 RepID=UPI0020081D1F)

HSP 1 Score: 64.3 bits (155), Expect = 1.670e-10
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    1 RKGIIQGQENSDLTPLGIDQAAATATRLRGNKYWQVHASDLVRACRTAEIILEEHDGPIPKKSELLREFRLGVQEG 228
            R GI+QGQ ++ L   G+DQA A A  L    + +  +SDL RA +TAEIIL++H G + +K   LRE  LG  EG
Sbjct:   22 RLGIMQGQRDTHLNAAGLDQAQAAAGALETVGFARAFSSDLDRAAKTAEIILQKHPGVLLEKHAALRERNLGDWEG 97          
BLAST of mRNA_H-elongata_contig145764.3127.1 vs. uniprot
Match: A0A1M2VQA5_TRAPU (Uncharacterized protein n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VQA5_TRAPU)

HSP 1 Score: 64.3 bits (155), Expect = 1.690e-10
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    1 RKGIIQGQENSDLTPLGIDQAAATATRLRGNKYWQVHASDLVRACRTAEIILEEHDGPIPKKSELLREFRLGVQEGLPRG 240
            R+GI+QGQ N+ L  LG  Q+   A  L    +   H SDL RA +TAEI+LE+H G   + S+ LRE  LG  +G   G
Sbjct:   19 RQGIMQGQRNTPLNSLGAHQSRLVADALTDVPFGAAHTSDLARARKTAEIVLEKHPGVTLETSQTLRERFLGDWQGRSGG 98          
BLAST of mRNA_H-elongata_contig145764.3127.1 vs. uniprot
Match: A0A165FZD3_9APHY (Phosphoglycerate mutase-like protein n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165FZD3_9APHY)

HSP 1 Score: 62.8 bits (151), Expect = 6.390e-10
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    1 RKGIIQGQENSDLTPLGIDQAAATATRLRGNKYWQVHASDLVRACRTAEIILEEHDGPIPKKSELLREFRLGVQEG 228
            R GI+QGQ ++ L   GI+QA   A+ L    + + H+SDL RA +TAEIILE+H   +  +S  LRE  LG  +G
Sbjct:   18 RLGIMQGQVDTKLNAAGIEQAQLAASALEVVPFKRAHSSDLERAAKTAEIILEKHPNVLLVRSVALRERHLGDWQG 93          
BLAST of mRNA_H-elongata_contig145764.3127.1 vs. uniprot
Match: A0A2H0WAP6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Beckwithbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_34_10 TaxID=1974495 RepID=A0A2H0WAP6_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 7.530e-10
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    4 KGIIQGQENSDLTPLGIDQAAATATRLRGNKYWQVHASDLVRACRTAEIILEEHDGPIPKKSELLREFRLGVQEG 228
            KGI+QGQ++S LT  GI+QA   A   +  K+ ++ +SDL+RA RTAEII+ E +  + K S+LLRE  LG  +G
Sbjct:   25 KGIVQGQKDSPLTEQGINQAKKAARLFKKIKFDEIFSSDLLRAKRTAEIIVLEREMAV-KTSKLLRERLLGRFQG 98          
BLAST of mRNA_H-elongata_contig145764.3127.1 vs. uniprot
Match: A0A5C3Q8M5_9APHY (Phosphoglycerate mutase-like protein n=2 Tax=Polyporus TaxID=5637 RepID=A0A5C3Q8M5_9APHY)

HSP 1 Score: 62.0 bits (149), Expect = 1.660e-9
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 RKGIIQGQENSDLTPLGIDQAAATATRLRGNKYWQVHASDLVRACRTAEIILEEHDGPIPKKSELLREFRLGVQEGL 231
            R+GI+QGQ ++ L   G++QA  TA  L    +   ++SDL RA RTAEIILE+H G   + +  LRE  +G  +G+
Sbjct:   20 RQGIVQGQLDTPLNDAGVEQARLTADALEDTPFEVAYSSDLQRARRTAEIILEKHPGVKLETTPALRERYMGDWQGV 96          
BLAST of mRNA_H-elongata_contig145764.3127.1 vs. uniprot
Match: A0A2H3J7G5_WOLCO (Phosphoglycerate mutase-like protein n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3J7G5_WOLCO)

HSP 1 Score: 60.5 bits (145), Expect = 4.390e-9
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    1 RKGIIQGQENSDLTPLGIDQAAATATRLRGNKYWQVHASDLVRACRTAEIILEEHDGPIPKKSELLREFRLGVQEG---LPRGTT 246
            R GI+QGQ ++ L   GI+QA   AT L    +   ++SDL RA +TAEIIL+ H     +K E LRE  LG  +G     RG+T
Sbjct:   18 RAGIMQGQLDTKLNAAGIEQAQLAATALEVVPFQIAYSSDLDRAFKTAEIILQSHPDVTLEKQEALRERHLGDWQGQIVATRGST 102          
BLAST of mRNA_H-elongata_contig145764.3127.1 vs. uniprot
Match: A0A4Y9YY51_9AGAM (Uncharacterized protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9YY51_9AGAM)

HSP 1 Score: 60.5 bits (145), Expect = 9.900e-9
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    1 RKGIIQGQENSDLTPLGIDQAAATATRLRGNKYWQVHASDLVRACRTAEIILEEHDGPIPKKSELLREFRLGVQEG 228
            R+G++QGQ +++L   G  QAA  A  LR   +   +ASDL RA  TAEIIL+ H G   +K   LRE  +G ++G
Sbjct:   18 RRGVVQGQLDTELNATGHAQAARVAEALRDVPFAAAYASDLARAAVTAEIILKHHPGVPLRKVAELRERYMGERQG 93          
BLAST of mRNA_H-elongata_contig145764.3127.1 vs. uniprot
Match: A0A0C9ZYI6_9AGAM (Uncharacterized protein n=1 Tax=Pisolithus microcarpus 441 TaxID=765257 RepID=A0A0C9ZYI6_9AGAM)

HSP 1 Score: 59.7 bits (143), Expect = 1.470e-8
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 1
Query:   13 IQGQENSDLTPLGIDQAAATATRLRGNKYWQVHASDLVRACRTAEIILEEHDGPIPKKSELLREFRLGVQEGLP 234
            IQGQ++  L   GI QAA  A  L+   + + + SDL RA +TAE+IL+ H   I +K + LRE  +G  EG P
Sbjct:   83 IQGQKDVPLNETGIAQAALVAQALKEVTFTKAYTSDLQRASKTAEVILQYHPSVIAEKDKALREVYMGELEGEP 156          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145764.3127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF56_ECTSI1.160e-3269.88Phosphoglycerate mutase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ63_9PHAE4.860e-3268.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0020081D1F1.670e-1046.05phosphoglycerate mutase-like protein n=1 Tax=Antro... [more]
A0A1M2VQA5_TRAPU1.690e-1043.75Uncharacterized protein n=1 Tax=Trametes pubescens... [more]
A0A165FZD3_9APHY6.390e-1044.74Phosphoglycerate mutase-like protein n=1 Tax=Laeti... [more]
A0A2H0WAP6_9BACT7.530e-1048.00Uncharacterized protein n=1 Tax=Candidatus Beckwit... [more]
A0A5C3Q8M5_9APHY1.660e-942.86Phosphoglycerate mutase-like protein n=2 Tax=Polyp... [more]
A0A2H3J7G5_WOLCO4.390e-943.53Phosphoglycerate mutase-like protein n=1 Tax=Wolfi... [more]
A0A4Y9YY51_9AGAM9.900e-943.42Uncharacterized protein n=1 Tax=Dentipellis fragil... [more]
A0A0C9ZYI6_9AGAM1.470e-843.24Uncharacterized protein n=1 Tax=Pisolithus microca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145764contigH-elongata_contig145764:1189..1449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.9e-25
Seed eggNOG ortholog2880.D8LF56
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhosphoglycerate mutase
Ec32 orthologEc-06_001760.1
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929867.4058583-CDS-H-elongata_contig145764:1188..14491622929867.4058583-CDS-H-elongata_contig145764:1188..1449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145764 1189..1449 +
1691679188.2023304-CDS-H-elongata_contig145764:1188..14491691679188.2023304-CDS-H-elongata_contig145764:1188..1449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145764 1189..1449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145764.3127.1prot_H-elongata_contig145764.3127.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145764 1189..1449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145764.3127.1

>prot_H-elongata_contig145764.3127.1 ID=prot_H-elongata_contig145764.3127.1|Name=mRNA_H-elongata_contig145764.3127.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
RKGIIQGQENSDLTPLGIDQAAATATRLRGNKYWQVHASDLVRACRTAEI
ILEEHDGPIPKKSELLREFRLGVQEGLPRGTTWLVS*
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mRNA from alignment at H-elongata_contig145764:1189..1449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145764.3127.1 ID=mRNA_H-elongata_contig145764.3127.1|Name=mRNA_H-elongata_contig145764.3127.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig145764:1189..1449+ (Himanthalia elongata Himel1 dioecious)
AGGAAAGGGATCATACAAGGACAGGAGAACTCCGACCTCACCCCGCTCGG CATTGACCAAGCGGCGGCCACCGCGACGCGCCTTCGAGGCAACAAGTACT GGCAGGTTCATGCCTCTGACCTTGTGCGAGCGTGTCGCACCGCGGAGATC ATTCTCGAGGAGCACGACGGGCCTATCCCGAAGAAGAGCGAATTGCTCCG CGAGTTCAGGCTCGGCGTGCAGGAGGGTCTTCCGCGGGGAACGACCTGGT TAGTTAGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig145764:1189..1449+

>mRNA_H-elongata_contig145764.3127.1 ID=mRNA_H-elongata_contig145764.3127.1|Name=mRNA_H-elongata_contig145764.3127.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig145764:1189..1449+ (Himanthalia elongata Himel1 dioecious)
AGGAAAGGGATCATACAAGGACAGGAGAACTCCGACCTCACCCCGCTCGG
CATTGACCAAGCGGCGGCCACCGCGACGCGCCTTCGAGGCAACAAGTACT
GGCAGGTTCATGCCTCTGACCTTGTGCGAGCGTGTCGCACCGCGGAGATC
ATTCTCGAGGAGCACGACGGGCCTATCCCGAAGAAGAGCGAATTGCTCCG
CGAGTTCAGGCTCGGCGTGCAGGAGGGTCTTCCGCGGGGAACGACCTGGT
TAGTTAGTTAGAGGAAAGGGATCATACAAGGACAGGAGAACTCCGACCTC
ACCCCGCTCGGCATTGACCAAGCGGCGGCCACCGCGACGCGCCTTCGAGG
CAACAAGTACTGGCAGGTTCATGCCTCTGACCTTGTGCGAGCGTGTCGCA
CCGCGGAGATCATTCTCGAGGAGCACGACGGGCCTATCCCGAAGAAGAGC
GAATTGCTCCGCGAGTTCAGGCTCGGCGTGCAGGAGGGTCTTCCGCGGGG
AACGACCTGGTTAGTTAGTTAG
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