mRNA_H-elongata_contig145627.3120.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145627.3120.1
Unique NamemRNA_H-elongata_contig145627.3120.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.330e-35
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   16 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIG 225
            M+EG TQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKY +KNEQDRFYPTTLGLALVDGYDNIG
Sbjct:  292 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG 361
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BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A158R560_9BILA (DNA topoisomerase n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A158R560_9BILA)

HSP 1 Score: 101 bits (251), Expect = 9.710e-23
Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   16 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNGQRKNQVK 252
            M++G TQ PPLL+E+DLIGLM++ GIGTDAT AEHI+KI++R+Y   N+++RF P  LGLALVDGYDN+G    K  ++
Sbjct:  478 MKDGYTQPPPLLNEADLIGLMEKYGIGTDATHAEHIEKIKKRQYATLNKENRFLPGYLGLALVDGYDNMGFAMSKPHLR 556
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BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A0N5A5K3_PARTI (DNA topoisomerase n=1 Tax=Parastrongyloides trichosuri TaxID=131310 RepID=A0A0N5A5K3_PARTI)

HSP 1 Score: 100 bits (249), Expect = 1.810e-22
Identity = 48/86 (55.81%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    4 LSSKMEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNGQRKNQVKNVL 261
            L+ +M EG T APPLLSESDLI LMD+ GIGTDAT AEHI+ I++RKY + N+++RFYP+ +GLALV+ Y+++G    K  +++ L
Sbjct:  490 LTIEMPEGTTTAPPLLSESDLISLMDKFGIGTDATHAEHIETIKKRKYAMLNKENRFYPSPIGLALVESYNHLGYQLSKPNLRSDL 575
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BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A090LCN1_STRRB (DNA topoisomerase n=1 Tax=Strongyloides ratti TaxID=34506 RepID=A0A090LCN1_STRRB)

HSP 1 Score: 99.0 bits (245), Expect = 6.270e-22
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    4 LSSKMEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNGQRKNQVKNVL 261
            L   + EG+T APPLL+E+DLI LMD+ GIGTDAT AEHI+ IQ+RKYC  N   RF P++LGLALV+ Y+N+G    K  +++ L
Sbjct:  489 LEVDIHEGMTTAPPLLNEADLISLMDKYGIGTDATHAEHIETIQKRKYCSLNNDRRFVPSSLGLALVESYNNLGYQLSKPDLRSDL 574
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BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: F1L3P3_ASCSU (DNA topoisomerase n=1 Tax=Ascaris suum TaxID=6253 RepID=F1L3P3_ASCSU)

HSP 1 Score: 97.8 bits (242), Expect = 1.110e-21
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   16 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNGQRKNQVK 252
            M EG TQ PPLLSE+DLI LMD+ GIGTDAT AEHI+ I+QR+Y   N + RF P  LGLALVDGYD +G    K  ++
Sbjct:  167 MSEGHTQPPPLLSEADLIALMDKYGIGTDATHAEHIETIKQRRYAALNAEKRFVPGYLGLALVDGYDRMGYAMSKPHMR 245
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BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: L1K3I3_GUITC (DNA topoisomerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K3I3_GUITC)

HSP 1 Score: 98.2 bits (243), Expect = 1.140e-21
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    1 PLSSKMEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIG 225
            P    M EG TQAPPLLSE+DLI LMD  GIGTDATIAEHI K+QQR Y +K++  +F PT+LG +LV  Y+ IG
Sbjct:  473 PTELAMTEGRTQAPPLLSEADLISLMDSHGIGTDATIAEHITKVQQRDYAIKSDSQQFSPTSLGKSLVTSYEAIG 547
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BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A183UA66_TOXCA (DNA topoisomerase n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183UA66_TOXCA)

HSP 1 Score: 98.2 bits (243), Expect = 1.190e-21
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   16 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNGQRKNQVK 252
            M EG TQ PPLLSE+DLI LMD+ GIGTDAT AEHI+ I+QR+Y   N + RF P  LGLALVDGYD +G    K  ++
Sbjct:  736 MNEGHTQPPPLLSEADLIALMDKYGIGTDATHAEHIETIKQRRYAALNNEKRFVPGYLGLALVDGYDRMGYAMSKPHMR 814
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BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A0B2W574_TOXCA (DNA topoisomerase n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2W574_TOXCA)

HSP 1 Score: 98.2 bits (243), Expect = 1.200e-21
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   16 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNGQRKNQVK 252
            M EG TQ PPLLSE+DLI LMD+ GIGTDAT AEHI+ I+QR+Y   N + RF P  LGLALVDGYD +G    K  ++
Sbjct:  561 MNEGHTQPPPLLSEADLIALMDKYGIGTDATHAEHIETIKQRRYAALNNEKRFVPGYLGLALVDGYDRMGYAMSKPHMR 639
[Close]
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A7S2B941_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B941_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.360e-21
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:    1 PLSSKMEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYD 216
            P   KM EG T  PPLL E+DLI LM++ GIGTDATIAEHI K+Q R Y  K+  +RF  T LGL LVDGYD
Sbjct:   30 PKELKMTEGRTAPPPLLHETDLIKLMERHGIGTDATIAEHIAKVQARSYVNKDASNRFRATPLGLVLVDGYD 101
[Close]
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A139APE3_GONPJ (DNA topoisomerase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139APE3_GONPJ)

HSP 1 Score: 97.1 bits (240), Expect = 3.000e-21
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:   16 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNG 231
            ++E  TQ P LL+E+DLI LMD+ GIGTDATIA+HI+ IQ RKY +K+   RF PTTLG AL++GYDN+G G
Sbjct:  471 IDESSTQPPSLLTEADLITLMDKSGIGTDATIAQHIKTIQDRKYAVKDGNGRFSPTTLGFALIEGYDNMGFG 542
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI1.330e-3594.29DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A158R560_9BILA9.710e-2359.49DNA topoisomerase n=1 Tax=Syphacia muris TaxID=451... [more]
A0A0N5A5K3_PARTI1.810e-2255.81DNA topoisomerase n=1 Tax=Parastrongyloides tricho... [more]
A0A090LCN1_STRRB6.270e-2255.81DNA topoisomerase n=1 Tax=Strongyloides ratti TaxI... [more]
F1L3P3_ASCSU1.110e-2160.76DNA topoisomerase n=1 Tax=Ascaris suum TaxID=6253 ... [more]
L1K3I3_GUITC1.140e-2162.67DNA topoisomerase n=1 Tax=Guillardia theta (strain... [more]
A0A183UA66_TOXCA1.190e-2160.76DNA topoisomerase n=1 Tax=Toxocara canis TaxID=626... [more]
A0A0B2W574_TOXCA1.200e-2160.76DNA topoisomerase n=1 Tax=Toxocara canis TaxID=626... [more]
A0A7S2B941_9STRA2.360e-2162.50DNA topoisomerase (Fragment) n=1 Tax=Dictyocha spe... [more]
A0A139APE3_GONPJ3.000e-2162.50DNA topoisomerase n=1 Tax=Gonapodya prolifera (str... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145627contigH-elongata_contig145627:527..1609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue4.5e-30
Seed eggNOG ortholog2880.D7FUP7
Preferred nameTOP3A
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
GOsGO:0000003,GO:0000278,GO:0000280,GO:0000712,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016604,GO:0016605,GO:0016853,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045132,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1903046
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145627.3120.1prot_H-elongata_contig145627.3120.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145627 527..1594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929866.7200205-CDS-H-elongata_contig145627:526..7001622929866.7200205-CDS-H-elongata_contig145627:526..700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145627 527..700 -
1691679187.9282372-CDS-H-elongata_contig145627:526..7001691679187.9282372-CDS-H-elongata_contig145627:526..700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145627 527..700 -
1622929866.7354522-CDS-H-elongata_contig145627:1465..15941622929866.7354522-CDS-H-elongata_contig145627:1465..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145627 1466..1594 -
1691679187.9388216-CDS-H-elongata_contig145627:1465..15941691679187.9388216-CDS-H-elongata_contig145627:1465..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145627 1466..1594 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929866.7522674-UTR-H-elongata_contig145627:1594..16091622929866.7522674-UTR-H-elongata_contig145627:1594..1609Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145627 1595..1609 -
1691679187.9470425-UTR-H-elongata_contig145627:1594..16091691679187.9470425-UTR-H-elongata_contig145627:1594..1609Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145627 1595..1609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145627.3120.1

>prot_H-elongata_contig145627.3120.1 ID=prot_H-elongata_contig145627.3120.1|Name=mRNA_H-elongata_contig145627.3120.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQ
DRFYPTTLGLALVDGYDNIGNGQRKNQVKNVLCRNCRMSFSQQRLSHSIF
R
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mRNA from alignment at H-elongata_contig145627:527..1609-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145627.3120.1 ID=mRNA_H-elongata_contig145627.3120.1|Name=mRNA_H-elongata_contig145627.3120.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-elongata_contig145627:527..1609- (Himanthalia elongata Himel1 dioecious)
CCCCTCTCTTCGAAGATGGAAGAAGGTTTAACTCAGGCGCCTCCCCTCCT
GAGCGAGTCCGACCTCATCGGCCTCATGGATCAGAAGGGGATAGGGACGG
ACGCCACGATCGCCGAGCACATACAAAAGATTCAGCAGCGCAAGGTAACA
ACAGCGACACCCTCCTTCTCCCCCCCCCCACCGCCTCCCTCGCAATGAGT
GTGAAAACCGTATCCGCGTAGTGACAGAATGCCCGATGTATGAAATAAAA
GAGAGAAGTATATATGATTGAAGGATATGCCAATCCAACGTCTTCAAGAA
TAGGTACCCATAAGGAGAGAGGAGATTATTTGCAAACTGGCGCGGCGCCC
GCTTAGGTGTAATGCCGGTTAGCGCGGTCTAATGCAAATTGATAAAAAAA
TGAAAACTTAAAAGCTTCTAATAAGAGGGACTTTGGAAACATGCATGTGA
CAGCCAGACGAAGGTGAATATTCCGATCCGTTCTCCCGAGAGCGTGTGGT
GAATGGCCTAACAGCTAAGGCAGGCAAAACTGGGGGACGCCCCGTCCATC
CCCTCCCCGACGGCGCTGGGCTGGCTTCGATTTATGCCATATCGACGAAA
TAAATGCTCTCGTTTCGAGGTTTTGAGTTCACGCTGGCTCAGGGTGGCGA
TGCGCGATGCTCGACATATATCGGCAGGATCGAACGCTTGTTTTACTTTA
CTGGCGTGAGTCCGGAGCATAACACTGTTGATGCAGCGTTAAACGTCCCC
TCCCCCCCCTTAAGAATCCCTTCCTGCTCGTGCATTATGCTCCTAAAACA
GCATCACAATATCGTTTTACCTCCTCTTTCTGGTCCAAATTGTCAATTTT
CCCCTTGTTTCGGCTGCCACGGCACATAATCTCGCTTCTGATTACGATTT
ACCTTACAGTACTGTCTCAAGAATGAGCAGGATCGTTTCTACCCGACGAC
CCTGGGACTCGCCCTGGTGGACGGCTACGACAACATAGGTAACGGACAAA
GGAAGAATCAAGTAAAGAACGTGCTGTGTCGGAATTGTCGGATGTCTTTC
TCACAGCAACGTCTTTCCCACAGTATTTTTCGA
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Coding sequence (CDS) from alignment at H-elongata_contig145627:527..1609-

>mRNA_H-elongata_contig145627.3120.1 ID=mRNA_H-elongata_contig145627.3120.1|Name=mRNA_H-elongata_contig145627.3120.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig145627:527..1609- (Himanthalia elongata Himel1 dioecious)
ATGGAAGAAGGTTTAACTCAGGCGCCTCCCCTCCTGAGCGAGTCCGACCT
CATCGGCCTCATGGATCAGAAGGGGATAGGGACGGACGCCACGATCGCCG
AGCACATACAAAAGATTCAGCAGCGCAAGATGGAAGAAGGTTTAACTCAG
GCGCCTCCCCTCCTGAGCGAGTCCGACCTCATCGGCCTCATGGATCAGAA
GGGGATAGGGACGGACGCCACGATCGCCGAGCACATACAAAAGATTCAGC
AGCGCAAGTACTGTCTCAAGAATGAGCAGGATCGTTTCTACCCGACGACC
CTGGGACTCGCCCTGGTGGACGGCTACGACAACATAGGTAACGGACAAAG
GAAGAATCAAGTAAAGAACGTGCTGTGTCGGAATTGTCGGATGTCTTTCT
CACAGCAACGTCTTTCCCACAGTATTTTTCGATACTGTCTCAAGAATGAG
CAGGATCGTTTCTACCCGACGACCCTGGGACTCGCCCTGGTGGACGGCTA
CGACAACATAGGTAACGGACAAAGGAAGAATCAAGTAAAGAACGTGCTGT
GTCGGAATTGTCGGATGTCTTTCTCACAGCAACGTCTTTCCCACAGTATT
TTTCGA
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