mRNA_H-elongata_contig1456.3117.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1456.3117.1 vs. uniprot
Match: D7FQ05_ECTSI (Ankyrin repeat domain 16 isoform 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ05_ECTSI) HSP 1 Score: 819 bits (2116), Expect = 5.380e-278 Identity = 494/1062 (46.52%), Postives = 620/1062 (58.38%), Query Frame = 1
Query: 1 VNARGGPNDRSPLFLAAIAKRWDVCTWLLGIGASKNIRDKEGLMAYQAIAGSSDPRVAERAGMLAESPQRVVSVTCRGITRSSLSLIWSEPLRNYDKEEFLGYLVEWRPMFSRPVSAVHSGHITKRMEPARKHIERGEGGSAQVTAAPPGSAGGVSAKSSRAMA-----DCVSSVAALH-RRLNTGGGETIVDAVCRAKMTPWKSRKVEDRALKITRLHPATNYLVRISALSLAGYGTPSRETMFSTSVAPPSAPRLAPVMVSTTPTSITVGWVPPKYENGAPMTRYEIKRLVLDQNHPDWNKGRDVPSL-ETEIGSTASSSCSSWSSSSNSDRDGEGKMI----------------------AAADPTSSTCTDAVPRSSRTTETFTATDASVGGDGNRLAKSARSGPMLGGKKKDDVWVGHKIETLSPYYTATGLPMYCRALFHVRAGSAVGWGHWSPSSDALEAQDIVLPVKRGATYMLMRWFNKPEGNVTLWELSKRVFKYGPDFRGDGDKNWMVCSREIDGRSEGESVHLCEGLSAGIDYQFRLRAFVNGSWQPSEEAVISRAFKTICSPPDPPPRCPRSRQLESDPLVIVGFIDTGAVLAGTSRGSFKSAIY------------------------CDRGGEVYNTE--------SGVETGQGRADKEVTGAVSIVR-CSAAREESE-------------RKEIYNNY---------------------------------CVDEEREDSWIHKTKVGVWRRRRKRKPKPGEVGDLEREEDMSKRNGQRGGETP-----EEEASTKVD-AATGGGESAVIGVSQSVAK-----NNESTSIVLEWDAGCSNGAITTNYEVWGLAEVIKG-NKTTGDGMWRLVATTDAATTTTLSGLCQAQPYQFKVRAKNEKGWSEFGPSTTPLVLNPLRACAPPDLVGRGITWLSLKLLAPPRAGLVLGFELQMCRWMPCMSEGEETWKYVYGG--EGGSSELTR------------------DESPVIWDLKPGASYRFKARARTVFGWSPEGSATEVYTTDRRF 2766
V+ARGG DRSPLFLAA+AKRWD CTWLL +GASK IRDK+GL AYQA+A SSDP VAER+GML + PQR+VSV+CRGIT ++L L WSEPLR+YD+E F+GYLVEWRPM SRPV HS H+ +R+ P RK ++ Q PG+A S +A + D + + +A RR NTGGGET D + PWK R+VE L++ L+PATNY+VR+SA +LAGYG PSRE + T V+PPSAP+ A MVS TP SITVGWVPPKYENG P+TRYEI+RLVLD++HPDW+KGR + +E+ +T A + C + S T E+ + GG M KKK VW+G + + LSPY+TA GLP YCRALF VRAG+ GWG WSPSSDALEAQDI+LP+KRGAT MLMRWFNKP+G+V WELS+RVFKYG DFRGD D +W++CSR+I G EGES C+GL G +YQFRLRA+ NG WQ SEE+++S FKTICSPPD PP CP +RQL SDPLV+ G +DTGA+L+ + S I D GG+ + + V G+ RA+++ V C+ A ES R E + + CV R+D I + + + + + + G R +S + GE+P +A+TK + G+S + +AK ++ ST++VLEWDAGC+NG+ITTNYEVWG+A+ +G +KT+G G W LVA T AA T TLSGL +AQPY+FKVRA+N GWSEFGP T P+VLNPLR C P+LV RGITWL+LKL APP AGL+LGFE+ MCRW P MSEGEETW+ V E G E +ES ++WDLKPGA YRFKARARTVFGWSP G A++VY T RRF
Sbjct: 273 VDARGGAEDRSPLFLAALAKRWDACTWLLEVGASKIIRDKKGLTAYQAMAASSDPEVAERSGMLTDPPQRIVSVSCRGITHNTLDLTWSEPLRSYDEEVFVGYLVEWRPMRSRPVCPAHSRHVAERVRPPRKGKKKRGRAGWQGAEIRPGTAEEACTTSHQAFSMGGDRDALGAASASSLRRPNTGGGETTAD-----EALPWKRREVEAFPLRLKHLYPATNYMVRVSAQTLAGYGVPSREALLRTRVSPPSAPKEAANMVSATPNSITVGWVPPKYENGEPITRYEIQRLVLDRHHPDWDKGRVLAKTGSSELLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATQAPAETPACVGSGVESGSTEESRVKLPSVSGGXXXXXXA------MDEDKKKIGVWIGRRTDKLSPYHTAGGLPTYCRALFRVRAGNLAGWGPWSPSSDALEAQDIILPIKRGATQMLMRWFNKPDGDVLRWELSRRVFKYGTDFRGDNDDSWILCSRDIPGLREGESTFRCKGLMPGTEYQFRLRAYSNGCWQASEESIVSSPFKTICSPPDAPPACPCTRQLASDPLVVGGMVDTGALLSADAEEPATSGITRGDNRRDGXXXXXXXXXXVDGRGSVDAGGDAAFSRRTRAAAAAAAVVRGKARAEEDFADTGRDVNGCADAGSESRYDGHSSGSGGDDGRTETHGDQGAGEGVGKAACKSIVHGEGRAEVMGLEVKDWDKCVRTSRDDEEIIRRRTHEATSQAEEQDEVGMEQTGARGVRLSNDEAESIGESPFLPELSGDATTKRNHGELEEGKSREDESVEDLAKTAKLCSSASTTMVLEWDAGCTNGSITTNYEVWGVADSTQGQDKTSGSGKWTLVALTKAAPTATLSGLREAQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRGITWLALKLRAPPGAGLLLGFEMHMCRWAPGMSEGEETWRLVVDSQREQGGREXXXXXXXXXXXXXXXXXXXXXEESRMVWDLKPGAGYRFKARARTVFGWSPGGPASDVYNTARRF 1323
BLAST of mRNA_H-elongata_contig1456.3117.1 vs. uniprot
Match: A0A6H5KFL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL4_9PHAE) HSP 1 Score: 764 bits (1973), Expect = 2.150e-257 Identity = 474/1080 (43.89%), Postives = 599/1080 (55.46%), Query Frame = 1
Query: 1 VNARGGPNDRSPLFLAAIAKRWDVCTWLLGIGASKNIRDKEGLMAYQAIAGSSDPRVAERAGMLAESPQRVVSVTCRGITRSSLSLIWSEPLRNYDKEEFLGYLVEWRPMFSRPVSAVHSGHITKRMEPARKHIERGEGGSAQVTAAPPGSAGGVSAKSSRAMADCVSSVAALHRRLNTGGGETIVDAVCRAKMTPWKSRKVEDRALKITRLHPATNYLVRISALSLAGYGTPSRETMFSTSVAPPSAPRLAPVMVSTTPTSITVGWVPPKYENGAPMTRYEIKRLVLDQNHPDWNKGRDVPSL-ETEIGSTASSSCSSWSSSSNSDRDG----------------------------EGKMIAAADPTSSTCTDAVPRSSRTTETFTATDASVGGDGNRLAKSARSGPMLGGKKKDDVWVGHKIETLSPYYTATGLPMYCRALFHVRAGSAVGWGHWSPSSDALEAQDIVLPVKRGATYMLMRWFNKPEGNVTLWELSKRVFKYGPDFRGDGDKNWMVCSREIDGRSEGESVHLCEGLSAGIDYQFRLRAFVNGSWQPSEEAVISRAFKTICSPPDPPPRCPRSRQLESDPLVIVGFIDTGAVLAGTSRGSFKSAI-------------------------------------------------------YCDRGGEV-----------YNTESGVETGQGR-----ADKEVTGAVSIVRCSAAREESERKEIYNNYCVDEEREDSWIHKTKVGVWRRRRKRKPKPGEVGDLEREEDMSKRNGQRGGETPEEEASTK---------VDAATGGG-----------ESAVIGVSQSVAKNNE-STSIVLEWDAGCSNGAITTNYEVWGLAEVIKG-NKTTGDGMWRLVATTDAATTTTLSGL-------C--------QAQPYQFKVRAKNEKGWSEFGPSTTPLVLNPLRACAPPDLVGRGITWLSLKLLAPPRAGLVLGFELQMCRWMPCMSEGEETWKYVYGGE---------------------GGSSELTRDESPVIWDLKPGASYRFKARARTVFGWSPEGSATEVYTTDRRF 2766
V+ARGG DRSPLFLAA+AKRWD CTWLL +GASK IRDK+GL AYQA+A SSDP VAER+GML + PQR+VSV+CRGIT ++L L WSEPLR+YD+E F+GYL + + G + + + G G A G SA S R R NTGGGET D + PWK R+VE L++ L+PATNY+VR+SA +LAGYG PSRE + T V+PPSAP+ A MVS TP SITVGWVPPKYENG P+TRYEI+RLVLD++HPDW+KGR + +E+ +T E A P C + S T E+ + GG + +G M KK+ VW+G + + LSP++TA GLP YCRALF VRAG+ GWG WSPSSDALEAQDI+LP+KRGAT ML+RWFNKP+G+V WELS+RVFKYG DFRGD D +W++CSR+I G EGES C+GL G +YQFRLRA+ NG WQ SEE+++S FKTICSPPD PP CPR+RQL SDPLV+ G +DTGA+L+ + S I + D G +V Y+ +S G R D+ V +V C + R E+ ++ E D+ + ++ R RR+ + + E++E ++ G RG E S + DAAT + +V G +++ + ST++VLEWDAGC+NG++TTNYEVWG+A+ +G +KT+G G W LVA T+AA T TLSGL C QAQPY+FKVRA+N GWSEFGP T P+VLNPLR C P+LV RGITWL+LKL APP AGL+LGFE+ MCRW P MSEGEETW V + R+ES ++WDLKPGA YRFKARARTV GWSP G ++VY T RRF
Sbjct: 232 VDARGGAEDRSPLFLAALAKRWDACTWLLEVGASKIIRDKKGLTAYQAMAASSDPEVAERSGMLTDPPQRIVSVSCRGITHNTLDLTWSEPLRSYDEEVFVGYLG----------AKIRPGTAEEACTTSHQAFSTGGGRDAL---------GAASASSLR--------------RPNTGGGETTAD-----ETFPWKRREVETFPLRLKHLYPATNYIVRVSARTLAGYGVPSREALLRTRVSPPSAPKEAVNMVSATPNSITVGWVPPKYENGEPITRYEIQRLVLDRHHPDWDKGRVLAKTGSSELLTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEATQATAEAPA---CFGSRVESGSTEESRVKLPSVSGG-------GSGTGTMDEDKKQIGVWIGRRTDKLSPHHTAGGLPTYCRALFRVRAGNLAGWGPWSPSSDALEAQDIILPIKRGATQMLIRWFNKPDGDVLRWELSRRVFKYGTDFRGDNDGSWILCSRDIPGLREGESTFRCKGLMPGTEYQFRLRAYSNGCWQASEESIVSSPFKTICSPPDAPPACPRARQLASDPLVVGGIVDTGALLSADAEEPATSGIRKGDNRRDGXXXXXXXXVDGGGSVDAGRDAAFSRRTGAAAAAAAVVRGKTRAEEDFADTGRDVNDCADVGSESRYDGDSSDSDGDDRRTETHGDQGAGEGVVMVACKSTVNGEGRAEVMG---LEVEDRDTRVPTSRDDEERIRRRTHEATSQ--EEEQDEVGMEQTGVRGVRLSNEAESIRESPSLPALSCDAATKRNHTELEEGKSREDESVEGFAKTTKLGSSASTTMVLEWDAGCTNGSVTTNYEVWGVADSTQGQDKTSGSGKWTLVALTEAAPTATLSGLREVCKSLCNPPLVSTRQAQPYRFKVRARNGLGWSEFGPPTPPVVLNPLRPCEAPELVDRGITWLALKLRAPPGAGLLLGFEMHMCRWAPGMSEGEETWSLVVDSQREEXXXXXXXXXXXXXXXXXXXXXXXXXREESRMVWDLKPGAGYRFKARARTVIGWSPGGPVSDVYNTARRF 1258
BLAST of mRNA_H-elongata_contig1456.3117.1 vs. uniprot
Match: A0A7S1XYK0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK0_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 3.810e-14 Identity = 68/227 (29.96%), Postives = 98/227 (43.17%), Query Frame = 1
Query: 2176 SIVLEWDAGCSNGAITTNYEVWGLAEVIKGNKTTGDGMWRLVATTDAATTTTLSGLCQAQPYQFKVRAKNEKGWSEFGPSTTPLVLNPLRACAPPDLVGRGITWLSLKLLAPPRAGLVLGFELQMCRWMPCMSEGEETWKYV------------------------YGGEGGSSE-----LTRDE--SPVIWDLKPGASYRFKARARTVFGWSPEGSATEVYTTDRR 2763
SI L W A NGAI Y++W +T G W +++ T + L Y+F+VRA+N+ GWSEFG + + N + P++V G +W+ LK + P +V FE+ M ++ EE W Y G EGG + + R E S + DLK Y+FK R T FGWSP G+ ++V RR
Sbjct: 826 SIFLTWAASKPNGAIVDLYDIWA---------STDFGPWEQMSSC-IHNTADVPHLNSGSQYRFRVRARNDVGWSEFGEESEVVTTNSIAPPGRPEIVAMGGSWVQLKWVQPASVNVVDVFEVYML-----VTGTEEYWDYAPAMAVPAAMVDANAAAEGGDSSHAEGAEGGQYQYQWQAVARVEGTSCTVPDLKSSFRYKFKIRCATAFGWSPFGADSDVIKLPRR 1037
BLAST of mRNA_H-elongata_contig1456.3117.1 vs. uniprot
Match: A0A7S2GIS6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIS6_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.710e-12 Identity = 62/206 (30.10%), Postives = 92/206 (44.66%), Query Frame = 1
Query: 2164 NESTSIVLEWDAGCSNGAITTNYEVWGLAEVIKGNKTTGDGMWRLVATTD-AATTTTLSGLCQAQPYQFKVRAKNEKGWSEFGPSTTPLVLNPLRACAPPDLVGRGITWLSLKLLAPPRAGLVLG-----FELQMCRWMPCMSEGEETWKYVYGGEGGSSELTRDESPVIWDLKPGASYRFKARARTVFGWSPEGSATEVYTTDRR 2763
N S+SIVL+W G SNG ++++ + DG W ++ + + A +S + + Y FK+RAKNE GWS+F T + N + + G G+TWL L +PP L+ +ELQ + P E W + RD V+ L+ RF+ARA T+ GWS T + T RR
Sbjct: 54 NSSSSIVLQWAVGWSNGPRIECFDIFVSCD---------DGPWNMLTSVEPTAKKFVVSDVVRGTGYVFKIRAKNEIGWSDFSEQTDEIKANAIPMPRNLQVNGSGVTWLELSW-SPPVTDLLAAVRVERYELQQQKCDPAQETSE--WATLT-----CDPALRDTRWVVEGLRSLERLRFRARALTLEGWSAFCDPTPWHRTPRR 242
BLAST of mRNA_H-elongata_contig1456.3117.1 vs. uniprot
Match: A0A7S3XNU2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNU2_HETAK) HSP 1 Score: 74.3 bits (181), Expect = 4.060e-10 Identity = 96/387 (24.81%), Postives = 145/387 (37.47%), Query Frame = 1
Query: 592 KSRKVEDRALKITRLHPATNYLVRISALSLAGYGTPSRETMFSTSVAPPSAPRLAPVMVSTTPTSITVGWVPPKYENGAPMTRYEIKRLVL---DQNHPDWN-----------------------KGRDVPSLET--EIGSTASSSCSSWSSSSNSDRDGEGKMIA----------AADPTSSTCTDAVPRSSRTTETFTATDA-SVGGDGNRLAKSARSGP----MLG--GKKKDDV---------------WV---GHKIETLSPYYTATGLPMYCRALFHVRAGSAVGWGHWSPSSDALEAQDIVLPVKRGATYMLMRWFNKPEGNVTLWELSKRVFKYGPDFRGDGDKNWMVCSREIDGRSEGESVHLCEGLSAGIDYQFRLR 1563
KS K E +T L PA Y R+SA ++AG G PS+E F T PPS P +P+++ + PT +GWVPPKY NGA + +E++ ++ D H RD S E S SS S S +S E ++ A + T+ PR + + A +V + + R +LG G K+ V W +E L+ L Y R VRA S +GW WS S ++A D V V+ G T ++W+ + ++ Y PD +G + + +++ GL+ G +YQ R R
Sbjct: 56 KSTKYE-----VTGLSPACAYAARVSARNVAGLGPPSKEVAFHTKPGPPSTPG-SPLLLRSEPTRAWLGWVPPKYHNGAQLQGFEVRYCLVFPRDSGHRQXXXXXXXXXXXXSPVPLGSGRRGGLSARDSVSGERGKPFQSRTSSRADSLDGSLHSRGSHENLALSFSGARFVTELAVEATTDGSRGVTPRKMSIKKKLSGIGAVAVANEVCQAEPDRRRSHHVPRLLGVEGSKRGSVVDETVLRFEDCRKTGWRLVDAEAMEGLAATCCVQDLFPYARLAVQVRAKSNLGWSEWSTVSSVMQATDPVQVVEVGPTEATIKWYRCAPPGEEIEHHEVQLRPYTPDL--EGGAGYRPAGPDAPHPGRPLALYRLNGLTPGTEYQVRTR 434
BLAST of mRNA_H-elongata_contig1456.3117.1 vs. uniprot
Match: A0A4Q9KC64_9ACTN (Fibronectin type III domain-containing protein n=1 Tax=Brevilactibacter sinopodophylli TaxID=1837344 RepID=A0A4Q9KC64_9ACTN) HSP 1 Score: 59.7 bits (143), Expect = 3.310e-5 Identity = 60/202 (29.70%), Postives = 84/202 (41.58%), Query Frame = 1
Query: 2170 STSIVLEWDAGCSNGAITTNYEVWGLAEVIKGNKTTGDGMWRLVATTDAATTTTLSGLCQAQPYQFKVRAKNEKGWSEF---GPSTTPLVLNPLRACAPPDLVGRGITWLSLKLLAPPRAGLVLGFELQMCRWMPCMSEGEETWKYV--YGGEGGSSELTRDESPVIWDLKPGASYRFKARARTVFGWSPEGSATEVYTTDR 2760
S S + W G NGA T +EV G G +T G AT ++GL P F+VRA+N+ GWSE+ GPS TP ++ GR S P LVL W P ++EG +Y+ YGG+ + T S + L A+Y F AR G S + ++T ++ R
Sbjct: 1515 SKSASVSWTPGADNGAPITRFEVEG------GGRTVDCGR---------ATRCDITGLENGTPVNFRVRAENKAGWSEWSDAGPSVTP-----------DEIPGRVP---SFSAGTPSDGSLVLN-------WAPAINEGSAVQRYLITYGGQTIEAPGTAT-SATVRGLNNNATYTFTIVARNAAGVSQQPTSTTGQSSGR 1679 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1456.3117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1456.3117.1 >prot_H-elongata_contig1456.3117.1 ID=prot_H-elongata_contig1456.3117.1|Name=mRNA_H-elongata_contig1456.3117.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=923bp VNARGGPNDRSPLFLAAIAKRWDVCTWLLGIGASKNIRDKEGLMAYQAIAback to top mRNA from alignment at H-elongata_contig1456:5429..12360- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1456.3117.1 ID=mRNA_H-elongata_contig1456.3117.1|Name=mRNA_H-elongata_contig1456.3117.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6932bp|location=Sequence derived from alignment at H-elongata_contig1456:5429..12360- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1456:5429..12360- >mRNA_H-elongata_contig1456.3117.1 ID=mRNA_H-elongata_contig1456.3117.1|Name=mRNA_H-elongata_contig1456.3117.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5538bp|location=Sequence derived from alignment at H-elongata_contig1456:5429..12360- (Himanthalia elongata Himel1 dioecious)back to top |