mRNA_H-elongata_contig145562.3114.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145562.3114.1
Unique NamemRNA_H-elongata_contig145562.3114.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig145562.3114.1 vs. uniprot
Match: D7G1B5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B5_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.750e-36
Identity = 73/98 (74.49%), Postives = 81/98 (82.65%), Query Frame = 1
Query:    1 LTGWTSSTLQVIFGLFMGRAADLYNRKLVIFYGLVIWNMATIFLGLSNNFIQLLLSRILLGIGESFSMPASYSLIADYFPPESLAQVSISHHQGCFVG 294
            L G+  S   VI GLFMGRAADLYNRKL+IFYGLVIWN+AT+ LG+S NF+QLLLSRILLGIGESFSMPASYSLIADYFP ESLAQ +     G +VG
Sbjct:   69 LVGYGFSFCYVICGLFMGRAADLYNRKLIIFYGLVIWNVATVCLGMSENFVQLLLSRILLGIGESFSMPASYSLIADYFPAESLAQANGVFAFGVYVG 166          
BLAST of mRNA_H-elongata_contig145562.3114.1 vs. uniprot
Match: A0A6H5KMV9_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV9_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 2.860e-35
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 1
Query:   49 MGRAADLYNRKLVIFYGLVIWNMATIFLGLSNNFIQLLLSRILLGIGESFSMPASYSLIADYFPPESLAQVSISHHQGCFVG 294
            MGRAADLYNRKL+IFYGLVIWN+AT+ LG+S NF+QLLLSRILLGIGESFSMPASYSLIADYFP ESLAQ +     G +VG
Sbjct:    1 MGRAADLYNRKLIIFYGLVIWNVATVCLGMSENFVQLLLSRILLGIGESFSMPASYSLIADYFPAESLAQANGVFAFGVYVG 82          
BLAST of mRNA_H-elongata_contig145562.3114.1 vs. uniprot
Match: A0A7S2Y1D3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1D3_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.270e-28
Identity = 60/98 (61.22%), Postives = 71/98 (72.45%), Query Frame = 1
Query:    1 LTGWTSSTLQVIFGLFMGRAADLYNRKLVIFYGLVIWNMATIFLGLSNNFIQLLLSRILLGIGESFSMPASYSLIADYFPPESLAQVSISHHQGCFVG 294
            L G+  S + VI GLFMGRAADLYNRKL++F GL IWN      GLS N+ QLLLSR++LG+GESFS PASYSLIADYFP E LA  +     G ++G
Sbjct:   67 LAGYGFSFVFVISGLFMGRAADLYNRKLIVFLGLAIWNAGVFIQGLSQNYQQLLLSRVILGVGESFSSPASYSLIADYFPKERLATANGIFAWGVYLG 164          
BLAST of mRNA_H-elongata_contig145562.3114.1 vs. uniprot
Match: A0A7S2XUC5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUC5_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.510e-25
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 1
Query:    1 LTGWTSSTLQVIFGLFMGRAADLYNRKLVIFYGLVIWNMATIFLGLSNNFIQLLLSRILLGIGESFSMPASYSLIADYFPPESLAQVSISHHQGCFVG 294
            L G+  S + V+ G+ MGRAADLYNRK++IF GL+IWN+     G + NF QLLL RI+LG+GESFS PASYSLIAD+FP ES A+ +     G +VG
Sbjct:   88 LVGFGFSFVFVLMGMVMGRAADLYNRKMIIFIGLLIWNVGVTIQGFAANFAQLLLGRIILGVGESFSAPASYSLIADFFPIESRAKANGIFAFGVYVG 185          
BLAST of mRNA_H-elongata_contig145562.3114.1 vs. uniprot
Match: A0A7S2V2F2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2F2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.880e-23
Identity = 52/99 (52.53%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    1 LTGWTSSTLQVIFGLFMGRAADLYNRKLVIFYGLVIWNMATIFLGLSNNFIQLLLSRILLGIGESFSMPASYSLIADYFPPESLAQVSISHHQGCFVGS 297
            L G+  S + V+ G+ MGRAAD++NRK ++  GL+IWN A    GLSNNF QLLLS + LGIG+SFS PAS+SL+AD+FP  + A+ +     G +VGS
Sbjct:    7 LAGFGFSLVFVLTGMVMGRAADVHNRKWILVAGLLIWNAAEACQGLSNNFWQLLLSTMFLGIGQSFSSPASFSLVADFFPRHARARANGFLSLGAYVGS 105          
BLAST of mRNA_H-elongata_contig145562.3114.1 vs. uniprot
Match: A0A7S2WU90_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU90_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.310e-22
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    1 LTGWTSSTLQVIFGLFMGRAADLYNRKLVIFYGLVIWNMATIFLGLSNNFIQLLLSRILLGIGESFSMPASYSLIADYFPPESLAQVSISHHQGCFVG 294
            LTG+  S   V+ GLFMGRAAD +NR+ ++  G  IWN+A   +G+S+NF +LL+ R++LG GE+FS PASYS+IAD FPPE   Q +     G +VG
Sbjct:   67 LTGYGFSATFVVTGLFMGRAADKHNRRNIVTIGCYIWNLALAAMGMSSNFYELLIFRLVLGFGEAFSNPASYSMIADLFPPEKRPQANGIFASGVYVG 164          
BLAST of mRNA_H-elongata_contig145562.3114.1 vs. uniprot
Match: A0A835YUX0_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.290e-21
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 LTGWTSSTLQVIFGLFMGRAADLYNRKLVIFYGLVIWNMATIFLGLSNNFIQLLLSRILLGIGESFSMPASYSLIADYFPPESLAQVSISHHQGCFVGSQTRVYILFCLVVCG 339
            L G+      V FG+ MGRAADLYNR  +I  GLVIW+ A +  G +++F  LL SR+LLG GESFS PASYSL+AD+FPP   A+ +  +  G ++G+    + L   +  G
Sbjct:   63 LAGFGFGVTYVTFGMVMGRAADLYNRCHIIVAGLVIWSAANVLCGAASDFKWLLASRVLLGFGESFSGPASYSLLADFFPPSRRAEANGVYAVGMYMGASMGSFSLSIAMAVG 175          
BLAST of mRNA_H-elongata_contig145562.3114.1 vs. uniprot
Match: A0A7S4E4V1_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4V1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.920e-19
Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    1 LTGWTSSTLQVIFGLFMGRAADLYNRKLVIFYGLVIWNMATIFLGLSNNFIQLLLSRILLGIGESFSMPASYSLIADYFPPESLAQVSISHHQGCFVG 294
            LTG+  S    + GL  GRAAD+ +RKL+IF G+  WN+A + +G S++++++LL R++LG G++FS PASYSLIADYFP    +Q +     G ++G
Sbjct:   81 LTGYGFSGTFCLAGLVAGRAADISSRKLIIFTGIFAWNVALLMIGYSHSYLEVLLWRLVLGFGQAFSSPASYSLIADYFPESQRSQANGLFACGVYIG 178          
BLAST of mRNA_H-elongata_contig145562.3114.1 vs. uniprot
Match: F0Y718_AURAN (MFS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y718_AURAN)

HSP 1 Score: 87.0 bits (214), Expect = 5.920e-18
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 LTGWTSSTLQVIFGLFMGRAADLYNRKLVIFYGLVIWNMATIFLGLSNNFIQLLLSRILLGIGESFSMPASYSLIADYFPPESLAQVS 264
            LTG+  S    + GL  GRAAD+ +RKL+IF G +IWN A   +G S  + ++LL R+ LG G++FS PASYSLIADYFP    AQ +
Sbjct:   58 LTGYGFSATFCLAGLVAGRAADVSSRKLIIFAGCLIWNAALFMIGYSKTYAEVLLWRLALGFGQAFSNPASYSLIADYFPEAQRAQAN 145          
BLAST of mRNA_H-elongata_contig145562.3114.1 vs. uniprot
Match: A0A7S2UT04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT04_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.280e-18
Identity = 41/98 (41.84%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 LTGWTSSTLQVIFGLFMGRAADLYNRKLVIFYGLVIWNMATIFLGLSNNFIQLLLSRILLGIGESFSMPASYSLIADYFPPESLAQVSISHHQGCFVG 294
            L G+  S       L MGR +DL +R+LV+F+G+++WN+A +   +SNNF QLL SR+++G+G++FS+PA Y LI+ +F  E +A  +   + G +VG
Sbjct:   67 LVGFGYSMAYCSMCLVMGRVSDLVSRRLVLFWGIILWNLALMLQAISNNFWQLLASRLMMGVGQAFSLPACYGLISIFFKDEDIASANGIFNVGLYVG 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145562.3114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1B5_ECTSI1.750e-3674.49MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KMV9_9PHAE2.860e-3579.27MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2Y1D3_9STRA5.270e-2861.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2XUC5_9STRA3.510e-2557.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2V2F2_9STRA1.880e-2352.53Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2WU90_9STRA4.310e-2251.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YUX0_9STRA2.290e-2146.02Major facilitator superfamily domain-containing pr... [more]
A0A7S4E4V1_9STRA5.920e-1945.92Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
F0Y718_AURAN5.920e-1851.14MFS domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2UT04_9STRA6.280e-1841.84Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145562contigH-elongata_contig145562:325..684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue2.4e-30
Seed eggNOG ortholog2880.D7G1B5
EggNOG free text desc.sphingolipid transporter activity
EggNOG OGsCOG0477@1,KOG1330@2759
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929865.8962429-CDS-H-elongata_contig145562:324..6841622929865.8962429-CDS-H-elongata_contig145562:324..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145562 325..684 +
1691679187.5623457-CDS-H-elongata_contig145562:324..6841691679187.5623457-CDS-H-elongata_contig145562:324..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145562 325..684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145562.3114.1prot_H-elongata_contig145562.3114.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145562 325..684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145562.3114.1

>prot_H-elongata_contig145562.3114.1 ID=prot_H-elongata_contig145562.3114.1|Name=mRNA_H-elongata_contig145562.3114.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
LTGWTSSTLQVIFGLFMGRAADLYNRKLVIFYGLVIWNMATIFLGLSNNF
IQLLLSRILLGIGESFSMPASYSLIADYFPPESLAQVSISHHQGCFVGSQ
TRVYILFCLVVCGINEEGGV
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mRNA from alignment at H-elongata_contig145562:325..684+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145562.3114.1 ID=mRNA_H-elongata_contig145562.3114.1|Name=mRNA_H-elongata_contig145562.3114.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig145562:325..684+ (Himanthalia elongata Himel1 dioecious)
CTGACCGGGTGGACTTCCTCTACCCTCCAGGTGATCTTCGGGCTGTTTAT GGGGCGAGCCGCGGACCTCTACAACCGCAAGCTGGTGATCTTCTACGGCC TGGTGATCTGGAACATGGCCACGATCTTCCTCGGGCTGTCCAACAACTTC ATCCAGCTGTTGCTTTCGCGAATCCTCCTCGGCATCGGGGAGTCCTTTTC TATGCCCGCGTCGTACTCGCTGATTGCCGACTACTTCCCCCCGGAGTCCT TGGCTCAGGTTAGCATTTCTCACCACCAGGGGTGTTTTGTTGGCTCTCAA ACTCGGGTTTATATTTTGTTTTGTCTCGTCGTGTGTGGAATCAATGAAGA GGGTGGAGTT
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Coding sequence (CDS) from alignment at H-elongata_contig145562:325..684+

>mRNA_H-elongata_contig145562.3114.1 ID=mRNA_H-elongata_contig145562.3114.1|Name=mRNA_H-elongata_contig145562.3114.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig145562:325..684+ (Himanthalia elongata Himel1 dioecious)
CTGACCGGGTGGACTTCCTCTACCCTCCAGGTGATCTTCGGGCTGTTTAT
GGGGCGAGCCGCGGACCTCTACAACCGCAAGCTGGTGATCTTCTACGGCC
TGGTGATCTGGAACATGGCCACGATCTTCCTCGGGCTGTCCAACAACTTC
ATCCAGCTGTTGCTTTCGCGAATCCTCCTCGGCATCGGGGAGTCCTTTTC
TATGCCCGCGTCGTACTCGCTGATTGCCGACTACTTCCCCCCGGAGTCCT
TGGCTCAGGTTAGCATTTCTCACCACCAGGGGTGTTTTGTTGGCTCTCAA
ACTCGGGTTTATATTTTGTTTTGTCTCGTCGTGTGTGGAATCAATGAAGA
GGGTGGAGTTCTGACCGGGTGGACTTCCTCTACCCTCCAGGTGATCTTCG
GGCTGTTTATGGGGCGAGCCGCGGACCTCTACAACCGCAAGCTGGTGATC
TTCTACGGCCTGGTGATCTGGAACATGGCCACGATCTTCCTCGGGCTGTC
CAACAACTTCATCCAGCTGTTGCTTTCGCGAATCCTCCTCGGCATCGGGG
AGTCCTTTTCTATGCCCGCGTCGTACTCGCTGATTGCCGACTACTTCCCC
CCGGAGTCCTTGGCTCAGGTTAGCATTTCTCACCACCAGGGGTGTTTTGT
TGGCTCTCAAACTCGGGTTTATATTTTGTTTTGTCTCGTCGTGTGTGGAA
TCAATGAAGAGGGTGGAGTT
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