prot_H-elongata_contig145550.3113.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig145550.3113.1
Unique Nameprot_H-elongata_contig145550.3113.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length178
Homology
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A835YY77_9STRA (Cytochrome c biogenesis protein, thiol reduction transmembrane region, CcdA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY77_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.260e-58
Identity = 106/155 (68.39%), Postives = 125/155 (80.65%), Query Frame = 0
Query:   26 GLATVLSLLGLSATFAGKVMGN---GTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGMEFMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLSWITPAS 177
            GLATVLS+LGLSAT+AGK+ G+   G +  G+A   LPL++S  A+A GLN+LEL+   LPS+E G+E   SLPR  RAY LGASSALVA+PCCTPVLASILGF+ASS DP LG  LLL YS+GYTTPLMAAGTASG LSR+MSA+GL+WITP S
Sbjct:   50 GLATVLSVLGLSATYAGKLFGSTGLGGDTGGLA---LPLVSSVIAIAAGLNLLELLNFTLPSWEAGVESFNSLPRVGRAYALGASSALVASPCCTPVLASILGFVASSQDPALGLALLLAYSLGYTTPLMAAGTASGALSRIMSASGLTWITPVS 201          
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A4D9CLR8_9STRA (DsbD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLR8_9STRA)

HSP 1 Score: 146 bits (368), Expect = 4.870e-39
Identity = 83/156 (53.21%), Postives = 115/156 (73.72%), Query Frame = 0
Query:   26 GLATVLSLLGLSATFAGKVMGN-GTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGMEFMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMS--ANGLSWITPASG 178
            GLAT LS+LGLSAT AGK+ G+ G  A G A   LPL AS  A+ MGLN+L+LV + LPSF+  ++ +   P + +A++LGA+SAL+A+PC TPVLASILGF+A+S +P+LG  LL  YS+GY+TPL+ AG  SG ++  ++   +G SW+TPA+G
Sbjct:  225 GLATSLSVLGLSATLAGKLFGSAGAGALGAA---LPLTASAVAIVMGLNLLDLVSLRLPSFDAALQ-LERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWVTPATG 376          
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A7S2UUE9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUE9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 5.360e-38
Identity = 85/160 (53.12%), Postives = 109/160 (68.12%), Query Frame = 0
Query:   26 GLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGME-------FMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLSWITPASG 178
            GLA+ L+ LG++AT AGKV G          + LP+LA   AV MGL++L+L+ + LPS  GGM+        +  LPR  RA+ LGASSAL++TPC TPVLA+ILGF+A+S DP LG  LLL Y+ GYTTPLM AG ASG  S  MS+ GL+W+TP +G
Sbjct:  240 GLASSLAALGVTATMAGKVYGQTLGPQN--GSTLPVLAGALAVVMGLSLLDLLSLPLPS-AGGMDGSSADEGLLDRLPRPLRAFGLGASSALISTPCSTPVLAAILGFVATSADPLLGGGLLLAYTAGYTTPLMIAGVASGKASEAMSSKGLTWVTPLTG 396          
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A0G4H6S3_VITBC (DsbD domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H6S3_VITBC)

HSP 1 Score: 135 bits (341), Expect = 5.920e-36
Identity = 81/182 (44.51%), Postives = 115/182 (63.19%), Query Frame = 0
Query:    2 SSTPLSFPTNSCCEIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGG-MEFMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSAN----GLSWITPASG 178
            SSTP   P+          +    GLAT LS LGL A+  G  MG   + +G A  ++P+ AS  AV MGLNVL LV +  P+F+GG ++    LP+  + ++ G +SAL+ATPC TPVL ++LG++AS+ DP LG  LL  Y++GY +P++AAGTASG L++L++      GL WITP +G
Sbjct:  100 SSTPTDDPSRPPPIPLSSSLMFAAGLATALSSLGLGASLLG--MGLFGQTSGPAERIVPVAASVLAVVMGLNVLNLVSISFPAFDGGELDEGRKLPKALQDFLFGVTSALIATPCSTPVLTALLGYVASTGDPLLGAALLFAYTLGYASPVVAAGTASGRLAQLLTQGEGREGLRWITPVTG 279          
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: R1BZD3_EMIHU (DsbD domain-containing protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BZD3_EMIHU)

HSP 1 Score: 130 bits (326), Expect = 2.360e-34
Identity = 79/157 (50.32%), Postives = 107/157 (68.15%), Query Frame = 0
Query:   26 GLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFE---GGMEFMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANG-LSWITPASG 178
            GLA  LS LG++A  AG ++G+GTE+   AA  L LL S     +GLN+L+++  +LPS E   GG+    SLPR  RA++ GASSALVA+PC +PVL S+LGF+A+  DP LG  LL  YS+G TTP++ AG A+G  +R++SA     W+TPASG
Sbjct:   76 GLACSLSALGVAAASAGAMLGSGTESASFAA--LRLLVSLLTCVLGLNLLKVLPFELPSLELSTGGV----SLPRPARAFLFGASSALVASPCASPVLVSLLGFVATQGDPLLGAALLTAYSLGETTPVLLAGIAAGSATRIVSAQRRFEWVTPASG 226          
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A2G5CCN4_AQUCA (DsbD domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CCN4_AQUCA)

HSP 1 Score: 128 bits (321), Expect = 2.920e-33
Identity = 73/171 (42.69%), Postives = 107/171 (62.57%), Query Frame = 0
Query:   12 SCCEIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGME---FMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLS-WITPASG 178
            S  E+    +    GLAT L++LG++A+FAGK  G   +        LP+ ASG AV MGLN+LE++++ LPSF   ++      +LP + +AY+ G + AL A+PC TPVLA++LG++A+S DP +G +LLL Y+ GY  PL+ A + +G L  L+S    S WI P SG
Sbjct:   83 SKAEVIGNSVAFSLGLATTLAILGIAASFAGKAYGQIGQG-------LPIAASGLAVIMGLNLLEIIQLQLPSFFDNVDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPIIGSSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPMSG 246          
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A067G6J2_CITSI (DsbD domain-containing protein n=6 Tax=Sapindales TaxID=41937 RepID=A0A067G6J2_CITSI)

HSP 1 Score: 128 bits (321), Expect = 3.610e-33
Identity = 76/171 (44.44%), Postives = 104/171 (60.82%), Query Frame = 0
Query:   12 SCCEIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGME---FMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLS-WITPASG 178
            S  +I    I    GLAT L+LLG+ A+FAGK  G          T LPL ASG A+ MGLN+LE++++ LPSF    +      + P + +AY+ G + AL A+PC TPVLA++LG++A+S DP +G TLLL Y+ GY  PL+ A + +G L  L+S    S WI P SG
Sbjct:   92 SRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-------IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSG 255          
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A835LIE3_9MAGN (DsbD domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LIE3_9MAGN)

HSP 1 Score: 128 bits (322), Expect = 4.210e-33
Identity = 73/171 (42.69%), Postives = 107/171 (62.57%), Query Frame = 0
Query:   12 SCCEIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGME---FMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLS-WITPASG 178
            S  E+    +    GLAT L++LG++A+FAGK  G   +        LP+ ASG AV MGLN+LE++++ LPSF   ++      +LP + +AY+ G + AL A+PC TPVLA++LG++A+S DP +G +LLL Y+ GY  PL+ A + +G L  L+S    S WI P SG
Sbjct:  114 SRAEVIGNSVAFSLGLATTLAILGIAASFAGKAYGQVGQG-------LPIAASGLAVLMGLNLLEVIELQLPSFFNNVDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPLIGSSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPMSG 277          
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A6I9R8P7_ELAGV (cytochrome c-type biogenesis ccda-like chloroplastic protein 2 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R8P7_ELAGV)

HSP 1 Score: 129 bits (324), Expect = 4.910e-33
Identity = 73/168 (43.45%), Postives = 104/168 (61.90%), Query Frame = 0
Query:   15 EIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGME---FMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLS-WITPASG 178
            EI    +    GLAT L++LG++A+FAGK  G   +        LP  ASG AV MGLN+LE++++ LPSF    +      + P + +AY+ G + AL A+PC TPVLA++LG++A+S DP +G +LLL Y+ GY  PL+ A + +G L  L+S   LS WI P SG
Sbjct:  156 EIIGNSVAFSLGLATTLAILGIAASFAGKAYGQIGQG-------LPFAASGLAVVMGLNLLEIIEIQLPSFFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASRDPVIGGSLLLTYTTGYVAPLLVAASFAGALQNLLSFRRLSAWINPVSG 316          
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A2P6QB75_ROSCH (Putative cytochrome C biogenesis protein, transmembrane n=4 Tax=Rosoideae TaxID=171638 RepID=A0A2P6QB75_ROSCH)

HSP 1 Score: 128 bits (321), Expect = 1.070e-32
Identity = 73/171 (42.69%), Postives = 106/171 (61.99%), Query Frame = 0
Query:   12 SCCEIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGME---FMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLS-WITPASG 178
            S  ++    I    GLAT L+LLG++A+FAGK  G   +        LP+ ASG A+ MGLN+LE++++ LPSF    +      + P + +AY+ G + AL A+PC TPVLA++LG++A+S DPF+G +LLL Y+ GY  PL+ A + +G L  L+S    S WI P SG
Sbjct:  141 SRAQVIGDSIAFSLGLATTLALLGIAASFAGKAYGQTGQG-------LPVAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPFIGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPISG 304          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YY77_9STRA2.260e-5868.39Cytochrome c biogenesis protein, thiol reduction t... [more]
A0A4D9CLR8_9STRA4.870e-3953.21DsbD domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S2UUE9_9STRA5.360e-3853.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4H6S3_VITBC5.920e-3644.51DsbD domain-containing protein n=1 Tax=Vitrella br... [more]
R1BZD3_EMIHU2.360e-3450.32DsbD domain-containing protein (Fragment) n=2 Tax=... [more]
A0A2G5CCN4_AQUCA2.920e-3342.69DsbD domain-containing protein n=1 Tax=Aquilegia c... [more]
A0A067G6J2_CITSI3.610e-3344.44DsbD domain-containing protein n=6 Tax=Sapindales ... [more]
A0A835LIE3_9MAGN4.210e-3342.69DsbD domain-containing protein n=1 Tax=Coptis chin... [more]
A0A6I9R8P7_ELAGV4.910e-3343.45cytochrome c-type biogenesis ccda-like chloroplast... [more]
A0A2P6QB75_ROSCH1.070e-3242.69Putative cytochrome C biogenesis protein, transmem... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003834Cytochrome C biogenesis protein, transmembrane domainPFAMPF02683DsbDcoord: 26..163
e-value: 2.8E-19
score: 69.9
NoneNo IPR availablePANTHERPTHR31272FAMILY NOT NAMEDcoord: 26..178
NoneNo IPR availablePANTHERPTHR31272:SF6CYTOCHROME C-TYPE BIOGENESIS CCDA-LIKE CHLOROPLASTIC PROTEINcoord: 26..178
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..155
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..53
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 101..128
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 76..100
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 129..133
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..75
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 156..178
NoneNo IPR availableTMHMMTMhelixcoord: 53..75
NoneNo IPR availableTMHMMTMhelixcoord: 102..124
NoneNo IPR availableTMHMMTMhelixcoord: 139..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145550contigH-elongata_contig145550:698..1643 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145550.3113.1mRNA_H-elongata_contig145550.3113.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig145550 671..1643 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig145550.3113.1 ID=prot_H-elongata_contig145550.3113.1|Name=mRNA_H-elongata_contig145550.3113.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
MSSTPLSFPTNSCCEIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTE
ATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGMEFMTSLPRNTR
AYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTP
LMAAGTASGVLSRLMSANGLSWITPASG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003834Cyt_c_assmbl_TM_dom