mRNA_H-elongata_contig145550.3113.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A835YY77_9STRA (Cytochrome c biogenesis protein, thiol reduction transmembrane region, CcdA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY77_9STRA) HSP 1 Score: 191 bits (484), Expect = 3.160e-58 Identity = 106/155 (68.39%), Postives = 125/155 (80.65%), Query Frame = 1
Query: 103 GLATVLSLLGLSATFAGKVMGN---GTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGMEFMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLSWITPAS 558
GLATVLS+LGLSAT+AGK+ G+ G + G+A LPL++S A+A GLN+LEL+ LPS+E G+E SLPR RAY LGASSALVA+PCCTPVLASILGF+ASS DP LG LLL YS+GYTTPLMAAGTASG LSR+MSA+GL+WITP S
Sbjct: 50 GLATVLSVLGLSATYAGKLFGSTGLGGDTGGLA---LPLVSSVIAIAAGLNLLELLNFTLPSWEAGVESFNSLPRVGRAYALGASSALVASPCCTPVLASILGFVASSQDPALGLALLLAYSLGYTTPLMAAGTASGALSRIMSASGLTWITPVS 201
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A4D9CLR8_9STRA (DsbD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLR8_9STRA) HSP 1 Score: 146 bits (368), Expect = 6.680e-39 Identity = 83/156 (53.21%), Postives = 115/156 (73.72%), Query Frame = 1
Query: 103 GLATVLSLLGLSATFAGKVMGN-GTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGMEFMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMS--ANGLSWITPASG 561
GLAT LS+LGLSAT AGK+ G+ G A G A LPL AS A+ MGLN+L+LV + LPSF+ ++ + P + +A++LGA+SAL+A+PC TPVLASILGF+A+S +P+LG LL YS+GY+TPL+ AG SG ++ ++ +G SW+TPA+G
Sbjct: 225 GLATSLSVLGLSATLAGKLFGSAGAGALGAA---LPLTASAVAIVMGLNLLDLVSLRLPSFDAALQ-LERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWVTPATG 376
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A7S2UUE9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUE9_9STRA) HSP 1 Score: 144 bits (362), Expect = 7.340e-38 Identity = 85/160 (53.12%), Postives = 109/160 (68.12%), Query Frame = 1
Query: 103 GLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGME-------FMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLSWITPASG 561
GLA+ L+ LG++AT AGKV G + LP+LA AV MGL++L+L+ + LPS GGM+ + LPR RA+ LGASSAL++TPC TPVLA+ILGF+A+S DP LG LLL Y+ GYTTPLM AG ASG S MS+ GL+W+TP +G
Sbjct: 240 GLASSLAALGVTATMAGKVYGQTLGPQN--GSTLPVLAGALAVVMGLSLLDLLSLPLPS-AGGMDGSSADEGLLDRLPRPLRAFGLGASSALISTPCSTPVLAAILGFVATSADPLLGGGLLLAYTAGYTTPLMIAGVASGKASEAMSSKGLTWVTPLTG 396
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A0G4H6S3_VITBC (DsbD domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H6S3_VITBC) HSP 1 Score: 138 bits (347), Expect = 1.030e-36 Identity = 83/192 (43.23%), Postives = 118/192 (61.46%), Query Frame = 1
Query: 1 PRILTYCLNMSSTPLSFPTNSCCEIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGG-MEFMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSAN----GLSWITPASG 561
P + Y SSTP P+ + GLAT LS LGL A+ G MG + +G A ++P+ AS AV MGLNVL LV + P+F+GG ++ LP+ + ++ G +SAL+ATPC TPVL ++LG++AS+ DP LG LL Y++GY +P++AAGTASG L++L++ GL WITP +G
Sbjct: 90 PLTIAYLAGDSSTPTDDPSRPPPIPLSSSLMFAAGLATALSSLGLGASLLG--MGLFGQTSGPAERIVPVAASVLAVVMGLNVLNLVSISFPAFDGGELDEGRKLPKALQDFLFGVTSALIATPCSTPVLTALLGYVASTGDPLLGAALLFAYTLGYASPVVAAGTASGRLAQLLTQGEGREGLRWITPVTG 279
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: R1BZD3_EMIHU (DsbD domain-containing protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BZD3_EMIHU) HSP 1 Score: 130 bits (326), Expect = 3.210e-34 Identity = 79/157 (50.32%), Postives = 107/157 (68.15%), Query Frame = 1
Query: 103 GLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFE---GGMEFMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANG-LSWITPASG 561
GLA LS LG++A AG ++G+GTE+ AA L LL S +GLN+L+++ +LPS E GG+ SLPR RA++ GASSALVA+PC +PVL S+LGF+A+ DP LG LL YS+G TTP++ AG A+G +R++SA W+TPASG
Sbjct: 76 GLACSLSALGVAAASAGAMLGSGTESASFAA--LRLLVSLLTCVLGLNLLKVLPFELPSLELSTGGV----SLPRPARAFLFGASSALVASPCASPVLVSLLGFVATQGDPLLGAALLTAYSLGETTPVLLAGIAAGSATRIVSAQRRFEWVTPASG 226
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A2G5CCN4_AQUCA (DsbD domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CCN4_AQUCA) HSP 1 Score: 127 bits (320), Expect = 5.570e-33 Identity = 72/168 (42.86%), Postives = 106/168 (63.10%), Query Frame = 1
Query: 70 EIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGME---FMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLS-WITPASG 561
E+ + GLAT L++LG++A+FAGK G + LP+ ASG AV MGLN+LE++++ LPSF ++ +LP + +AY+ G + AL A+PC TPVLA++LG++A+S DP +G +LLL Y+ GY PL+ A + +G L L+S S WI P SG
Sbjct: 86 EVIGNSVAFSLGLATTLAILGIAASFAGKAYGQIGQG-------LPIAASGLAVIMGLNLLEIIQLQLPSFFDNVDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPIIGSSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPMSG 246
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A6I9R8P7_ELAGV (cytochrome c-type biogenesis ccda-like chloroplastic protein 2 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R8P7_ELAGV) HSP 1 Score: 129 bits (324), Expect = 6.660e-33 Identity = 73/168 (43.45%), Postives = 104/168 (61.90%), Query Frame = 1
Query: 70 EIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGME---FMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLS-WITPASG 561
EI + GLAT L++LG++A+FAGK G + LP ASG AV MGLN+LE++++ LPSF + + P + +AY+ G + AL A+PC TPVLA++LG++A+S DP +G +LLL Y+ GY PL+ A + +G L L+S LS WI P SG
Sbjct: 156 EIIGNSVAFSLGLATTLAILGIAASFAGKAYGQIGQG-------LPFAASGLAVVMGLNLLEIIEIQLPSFFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASRDPVIGGSLLLTYTTGYVAPLLVAASFAGALQNLLSFRRLSAWINPVSG 316
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A067G6J2_CITSI (DsbD domain-containing protein n=6 Tax=Sapindales TaxID=41937 RepID=A0A067G6J2_CITSI) HSP 1 Score: 127 bits (320), Expect = 6.880e-33 Identity = 75/168 (44.64%), Postives = 103/168 (61.31%), Query Frame = 1
Query: 70 EIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGME---FMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLS-WITPASG 561
+I I GLAT L+LLG+ A+FAGK G T LPL ASG A+ MGLN+LE++++ LPSF + + P + +AY+ G + AL A+PC TPVLA++LG++A+S DP +G TLLL Y+ GY PL+ A + +G L L+S S WI P SG
Sbjct: 95 QIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-------IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSG 255
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: A0A835LIE3_9MAGN (DsbD domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LIE3_9MAGN) HSP 1 Score: 128 bits (321), Expect = 8.030e-33 Identity = 72/168 (42.86%), Postives = 106/168 (63.10%), Query Frame = 1
Query: 70 EIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGME---FMTSLPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLS-WITPASG 561
E+ + GLAT L++LG++A+FAGK G + LP+ ASG AV MGLN+LE++++ LPSF ++ +LP + +AY+ G + AL A+PC TPVLA++LG++A+S DP +G +LLL Y+ GY PL+ A + +G L L+S S WI P SG
Sbjct: 117 EVIGNSVAFSLGLATTLAILGIAASFAGKAYGQVGQG-------LPIAASGLAVLMGLNLLEVIELQLPSFFNNVDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPLIGSSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPMSG 277
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Match: K3Y8E6_SETIT (DsbD domain-containing protein n=17 Tax=Paniceae TaxID=147428 RepID=K3Y8E6_SETIT) HSP 1 Score: 128 bits (322), Expect = 1.530e-32 Identity = 75/168 (44.64%), Postives = 107/168 (63.69%), Query Frame = 1
Query: 70 EIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEATGVAATLLPLLASGFAVAMGLNVLELVKVDLPSFEGGMEFMTS---LPRNTRAYVLGASSALVATPCCTPVLASILGFIASSHDPFLGFTLLLIYSVGYTTPLMAAGTASGVLSRLMSANGLS-WITPASG 561
E+ I GLAT L++LG++A+FAGK G + LP+ ASG A+ MGLN+LE+V++ LPSF + T+ LP + +AY+ G + AL A+PC TPVLA++LG++A+S DP +G +LLL Y+ GY PL+ A + +GVL L+S S WI P SG
Sbjct: 164 EVVGNSIAFSLGLATTLAILGVAASFAGKAYGQVGQG-------LPVAASGLAIVMGLNLLEVVELQLPSFFSDFDPRTAAANLPSSAQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIVGGSLLLTYTTGYVAPLLIAASFAGVLQSLLSFRRYSAWINPISG 324 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145550.3113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig145550.3113.1 >prot_H-elongata_contig145550.3113.1 ID=prot_H-elongata_contig145550.3113.1|Name=mRNA_H-elongata_contig145550.3113.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp MSSTPLSFPTNSCCEIFDGLIGGDKGLATVLSLLGLSATFAGKVMGNGTEback to top mRNA from alignment at H-elongata_contig145550:671..1643+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig145550.3113.1 ID=mRNA_H-elongata_contig145550.3113.1|Name=mRNA_H-elongata_contig145550.3113.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=973bp|location=Sequence derived from alignment at H-elongata_contig145550:671..1643+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig145550:671..1643+ >mRNA_H-elongata_contig145550.3113.1 ID=mRNA_H-elongata_contig145550.3113.1|Name=mRNA_H-elongata_contig145550.3113.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig145550:671..1643+ (Himanthalia elongata Himel1 dioecious)back to top |