prot_H-elongata_contig145526.3112.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig145526.3112.1
Unique Nameprot_H-elongata_contig145526.3112.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length212
Homology
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.650e-47
Identity = 95/214 (44.39%), Postives = 134/214 (62.62%), Query Frame = 0
Query:    3 YSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPV---IMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQ-TLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 212
            Y++I R DATR++ ++F+++KSE+ +ALEQF+AD R  G P    ++RSD+  Q    +F + CRK  IK+E T  +TP+ NGVAER L +I  AA  S  Q K  F   D P    LW  +   ACH LNCTATT+N G  +PYE +HG  PP  ++   L+P  Y+  R+ K   + + G+YLGPA NHPRD +R+ + E G +V +R+ TW
Sbjct:  781 YTLIIRCDATRWTRVFFLKRKSEAADALEQFIADYRSEGTPCEVYVVRSDNEFQ---GQFSKTCRKWGIKQEKTPPHTPKYNGVAERWLGIISDAALASRIQAKEMFP--DAPTDPALWAEAIACACHQLNCTATTANPGDKSPYEMFHGKPPPAGSVYPFLKPAVYKARRERKSHPKGRKGWYLGPAHNHPRDCVRMLT-EAGTVVTTRNFTW 988          
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5JV95_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV95_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 3.700e-45
Identity = 88/214 (41.12%), Postives = 130/214 (60.75%), Query Frame = 0
Query:    3 YSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPV---IMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPP-QTLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 212
            Y++I RDD +R++ ++F++  S++    E+FLAD R  G P    I R+D   + +  +F E+CR+H IK+EFTS +TP+ NG AER L LI  AA  S  Q    F      P   LW  + + ACH LNCTAT SN+G  + YE +H   PP ++    L+P  ++  RK K + + + G+YLGPA NHPRD +R+ + E G ++I+R+ TW
Sbjct:   43 YTLIIRDDFSRWTRVFFLKHTSDAAVGFEKFLADYRTKGVPCEVYIARTDGGGEFQ-GQFAEVCRRHGIKQEFTSLHTPKYNGAAERALGLITGAALASRIQATQLFPDAQNHP--GLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVRSTYPFLKPAVFKSRRKAKSQIKGEKGWYLGPAYNHPRDCVRMLT-EAGTVIITRNFTW 252          
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 4.140e-44
Identity = 84/211 (39.81%), Postives = 122/211 (57.82%), Query Frame = 0
Query:    5 IIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPV---IMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQTLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 212
            +I +DD TR +W+YF++ K ++ +A   FLA  R  G P    I+RSD+  +     F  +C +  IK+EFT A +PQ NGVAERGL LI+ AA  +  Q KV F  + LP   RLW  + + AC  +N TA ++N    +PYE WHG          L+P + R  R +K   + +  FY+GP+R+HPRD  R+ ++  G I  +R+VTW
Sbjct:    1 MIVKDDFTRRTWMYFLKSKPDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPYPFLKPAYCRWQRPSKLLPKGEACFYVGPSRDHPRDCHRVLTR-VGTIQETRNVTW 210          
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.670e-43
Identity = 91/218 (41.74%), Postives = 129/218 (59.17%), Query Frame = 0
Query:    3 YSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPP---VIMRSDD----TPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQ-TLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 212
            Y++I RDD +R++ ++F++ KS +    E+F AD R  G P    I R+D       Q  + +F E+CR+H IK+EFT  NTP+ NGVAER L LI  AA  S  Q    F   D P   RLW  + + ACH LNCTAT SN+G  + YE +H   PP  +    L+P  ++  RK K + + + G+YLGPA NHPRD +R+ + E G ++ +R+ TW
Sbjct:   42 YTLIIRDDFSRWTRVFFLKHKSGAAVGFEKFPADHRTKGVPREVYIARTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGLITDAALASRIQATQLFP--DAPNHPRLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDPPPPVGSTSPFLKPAVFKSRRKAKSQPKGEKGWYLGPAHNHPRDCVRMLT-EAGTVITTRNFTW 256          
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.370e-43
Identity = 86/213 (40.38%), Postives = 127/213 (59.62%), Query Frame = 0
Query:    3 YSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPVIM---RSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQTLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 212
            Y +I +DD TR +W+YF+R KS++ +A   FLA  R  G P ++   RSD+  +     F  +C +  IK+EFT A++PQ NGVAERGL LI++AA  +  Q KV F  + LP   +LW  + + AC  LN TA ++N    +PYE W+G   P      L+P + +  R +K   + +  FY+GP+R+HPRD  R+ ++  G I  +RDVTW
Sbjct:  349 YPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLFPKGESCFYVGPSRDHPRDCHRVLTR-AGTIQETRDVTW 560          
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.130e-43
Identity = 86/213 (40.38%), Postives = 128/213 (60.09%), Query Frame = 0
Query:    3 YSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPV---IMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQTLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 212
            Y +I +DD TR +W+YF+R KS++ +A   FLA+ R  G P    I+RSD+  +     F  +C +  IK+EFT A++P+ NGVAERGL LI++AA  +  Q KV F  + LP   RLW  + + AC  LN TA ++N    +PYE W+G   P      L+P + +  R +K   + +  FY+GP+R+HPRD  R+ ++  G I  +R+VTW
Sbjct:  496 YPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTR-AGTIQETRNVTW 707          
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.170e-43
Identity = 86/213 (40.38%), Postives = 128/213 (60.09%), Query Frame = 0
Query:    3 YSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPV---IMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQTLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 212
            Y +I +DD TR +W+YF+R KS++ +A   FLA+ R  G P    I+RSD+  +     F  +C +  IK+EFT A++P+ NGVAERGL LI++AA  +  Q KV F  + LP   RLW  + + AC  LN TA ++N    +PYE W+G   P      L+P + +  R +K   + +  FY+GP+R+HPRD  R+ ++  G I  +R+VTW
Sbjct:  472 YPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTR-AGTIQETRNVTW 683          
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 3.600e-43
Identity = 87/213 (40.85%), Postives = 125/213 (58.69%), Query Frame = 0
Query:    3 YSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPV---IMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQTLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 212
            Y +I +DD TR +W+YF+R KS++ +A   FLA  R +G P    I+RSD+  +     F  +C +  IK+EFT A +PQ NGVAERGL LI++AA  +  Q KV F  + LP   +LW  + + AC  +N TA ++N     PYE W+G   P      L+P + R  R  K   + +  FY+GP+R+HPRD  R+ ++  G I  +RDVTW
Sbjct:  211 YPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPYPFLKPAYCRWQRPTKLLPKGESCFYVGPSRDHPRDCHRVLTR-AGTIQETRDVTW 422          
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 4.370e-43
Identity = 86/214 (40.19%), Postives = 131/214 (61.21%), Query Frame = 0
Query:    3 YSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPP---VIMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQ-TLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 212
            Y++I +DD TR++ +YF++ KS++  A E++LA+ R +G P   +++RSD+  +  +  F  +CRK+ IK+EFT A++P+ NGVAER L LI  AA  +  Q    + G   P    LW  +   +C+ LNCT+TTSN    +PYE WHG  PP       L+P  Y++ R +K E +A+  FYLGP  N  RD +RI +++  AI  +R+ TW
Sbjct:  754 YTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGA--PNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAIT-TRNFTW 964          
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 4.390e-43
Identity = 86/214 (40.19%), Postives = 131/214 (61.21%), Query Frame = 0
Query:    3 YSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPP---VIMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQ-TLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 212
            Y++I +DD TR++ +YF++ KS++  A E++LA+ R +G P   +++RSD+  +  +  F  +CRK+ IK+EFT A++P+ NGVAER L LI  AA  +  Q    + G   P    LW  +   +C+ LNCT+TTSN    +PYE WHG  PP       L+P  Y++ R +K E +A+  FYLGP  N  RD +RI +++  AI  +R+ TW
Sbjct:  589 YTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGA--PNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAIT-TRNFTW 799          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L175_9PHAE1.650e-4744.39Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV95_9PHAE3.700e-4541.12Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KWE4_9PHAE4.140e-4439.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K293_9PHAE1.670e-4341.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JB16_9PHAE2.370e-4340.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K622_9PHAE3.130e-4340.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE3.170e-4340.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y0_9PHAE3.600e-4340.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTI6_9PHAE4.370e-4340.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE4.390e-4340.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 3..89
e-value: 2.3E-11
score: 43.9
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..151
score: 14.923
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..178
e-value: 1.5E-18
score: 68.7
NoneNo IPR availablePANTHERPTHR11439:SF284coord: 1..86
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..86
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145526contigH-elongata_contig145526:637..1272 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145526.3112.1mRNA_H-elongata_contig145526.3112.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig145526 637..1284 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig145526.3112.1 ID=prot_H-elongata_contig145526.3112.1|Name=mRNA_H-elongata_contig145526.3112.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
MKYSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPVIMRSDD
TPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAY
QPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGV
KPPQTLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQE
TGAIVISRDVTW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf