mRNA_H-elongata_contig145526.3112.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 181 bits (460), Expect = 4.680e-49 Identity = 98/220 (44.55%), Postives = 137/220 (62.27%), Query Frame = 1
Query: 1 SKGGMKYSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPV---IMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQ-TLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 648
S GG Y++I R DATR++ ++F+++KSE+ +ALEQF+AD R G P ++RSD+ Q +F + CRK IK+E T +TP+ NGVAER L +I AA S Q K F D P LW + ACH LNCTATT+N G +PYE +HG PP ++ L+P Y+ R+ K + + G+YLGPA NHPRD +R+ + E G +V +R+ TW
Sbjct: 775 SIGGRWYTLIIRCDATRWTRVFFLKRKSEAADALEQFIADYRSEGTPCEVYVVRSDNEFQ---GQFSKTCRKWGIKQEKTPPHTPKYNGVAERWLGIISDAALASRIQAKEMFP--DAPTDPALWAEAIACACHQLNCTATTANPGDKSPYEMFHGKPPPAGSVYPFLKPAVYKARRERKSHPKGRKGWYLGPAHNHPRDCVRMLT-EAGTVVTTRNFTW 988
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5JV95_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV95_9PHAE) HSP 1 Score: 167 bits (422), Expect = 9.850e-47 Identity = 91/220 (41.36%), Postives = 133/220 (60.45%), Query Frame = 1
Query: 1 SKGGMKYSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPV---IMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPP-QTLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 648
S GG Y++I RDD +R++ ++F++ S++ E+FLAD R G P I R+D + + +F E+CR+H IK+EFTS +TP+ NG AER L LI AA S Q F P LW + + ACH LNCTAT SN+G + YE +H PP ++ L+P ++ RK K + + + G+YLGPA NHPRD +R+ + E G ++I+R+ TW
Sbjct: 37 SIGGNWYTLIIRDDFSRWTRVFFLKHTSDAAVGFEKFLADYRTKGVPCEVYIARTDGGGEFQ-GQFAEVCRRHGIKQEFTSLHTPKYNGAAERALGLITGAALASRIQATQLFPDAQNHP--GLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVRSTYPFLKPAVFKSRRKAKSQIKGEKGWYLGPAYNHPRDCVRMLT-EAGTVIITRNFTW 252
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 170 bits (431), Expect = 3.610e-45 Identity = 89/219 (40.64%), Postives = 130/219 (59.36%), Query Frame = 1
Query: 1 SKGGMKYSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPVIM---RSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQTLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 648
S GG Y +I +DD TR +W+YF+R KS++ +A FLA R G P ++ RSD+ + F +C + IK+EFT A++PQ NGVAERGL LI++AA + Q KV F + LP +LW + + AC LN TA ++N +PYE W+G P L+P + + R +K + + FY+GP+R+HPRD R+ ++ G I +RDVTW
Sbjct: 343 SVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLFPKGESCFYVGPSRDHPRDCHRVLTR-AGTIQETRDVTW 560
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 170 bits (430), Expect = 3.790e-45 Identity = 90/219 (41.10%), Postives = 128/219 (58.45%), Query Frame = 1
Query: 1 SKGGMKYSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPV---IMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQTLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 648
S GG Y +I +DD TR +W+YF+R KS++ +A FLA R +G P I+RSD+ + F +C + IK+EFT A +PQ NGVAERGL LI++AA + Q KV F + LP +LW + + AC +N TA ++N PYE W+G P L+P + R R K + + FY+GP+R+HPRD R+ ++ G I +RDVTW
Sbjct: 205 SVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPYPFLKPAYCRWQRPTKLLPKGESCFYVGPSRDHPRDCHRVLTR-AGTIQETRDVTW 422
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 170 bits (430), Expect = 4.770e-45 Identity = 89/219 (40.64%), Postives = 131/219 (59.82%), Query Frame = 1
Query: 1 SKGGMKYSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPV---IMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQTLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 648
S GG Y +I +DD TR +W+YF+R KS++ +A FLA+ R G P I+RSD+ + F +C + IK+EFT A++P+ NGVAERGL LI++AA + Q KV F + LP RLW + + AC LN TA ++N +PYE W+G P L+P + + R +K + + FY+GP+R+HPRD R+ ++ G I +R+VTW
Sbjct: 490 SIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTR-AGTIQETRNVTW 707
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 170 bits (430), Expect = 4.820e-45 Identity = 89/219 (40.64%), Postives = 131/219 (59.82%), Query Frame = 1
Query: 1 SKGGMKYSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPV---IMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQTLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 648
S GG Y +I +DD TR +W+YF+R KS++ +A FLA+ R G P I+RSD+ + F +C + IK+EFT A++P+ NGVAERGL LI++AA + Q KV F + LP RLW + + AC LN TA ++N +PYE W+G P L+P + + R +K + + FY+GP+R+HPRD R+ ++ G I +R+VTW
Sbjct: 466 SIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTR-AGTIQETRNVTW 683
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE) HSP 1 Score: 169 bits (428), Expect = 5.990e-45 Identity = 94/224 (41.96%), Postives = 132/224 (58.93%), Query Frame = 1
Query: 1 SKGGMKYSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPP---VIMRSDD----TPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQ-TLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 648
S GG Y++I RDD +R++ ++F++ KS + E+F AD R G P I R+D Q + +F E+CR+H IK+EFT NTP+ NGVAER L LI AA S Q F D P RLW + + ACH LNCTAT SN+G + YE +H PP + L+P ++ RK K + + + G+YLGPA NHPRD +R+ + E G ++ +R+ TW
Sbjct: 36 SIGGNWYTLIIRDDFSRWTRVFFLKHKSGAAVGFEKFPADHRTKGVPREVYIARTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGLITDAALASRIQATQLFP--DAPNHPRLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDPPPPVGSTSPFLKPAVFKSRRKAKSQPKGEKGWYLGPAHNHPRDCVRMLT-EAGTVITTRNFTW 256
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 169 bits (428), Expect = 9.060e-45 Identity = 89/220 (40.45%), Postives = 134/220 (60.91%), Query Frame = 1
Query: 1 SKGGMKYSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPP---VIMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQ-TLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 648
S GG Y++I +DD TR++ +YF++ KS++ A E++LA+ R +G P +++RSD+ + + F +CRK+ IK+EFT A++P+ NGVAER L LI AA + Q + G P LW + +C+ LNCT+TTSN +PYE WHG PP L+P Y++ R +K E +A+ FYLGP N RD +RI +++ AI +R+ TW
Sbjct: 748 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGA--PNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAIT-TRNFTW 964
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 169 bits (428), Expect = 9.120e-45 Identity = 89/220 (40.45%), Postives = 134/220 (60.91%), Query Frame = 1
Query: 1 SKGGMKYSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPP---VIMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQ-TLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 648
S GG Y++I +DD TR++ +YF++ KS++ A E++LA+ R +G P +++RSD+ + + F +CRK+ IK+EFT A++P+ NGVAER L LI AA + Q + G P LW + +C+ LNCT+TTSN +PYE WHG PP L+P Y++ R +K E +A+ FYLGP N RD +RI +++ AI +R+ TW
Sbjct: 583 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGA--PNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAIT-TRNFTW 799
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 169 bits (428), Expect = 9.150e-45 Identity = 89/220 (40.45%), Postives = 134/220 (60.91%), Query Frame = 1
Query: 1 SKGGMKYSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPP---VIMRSDDTPQLKDSRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKAAKVSAYQPKVSFVGMDLPPMHRLWTYSYNNACHMLNCTATTSNKGWTTPYEKWHGVKPPQ-TLVQLLQPWFYRINRKNKQEARAKPGFYLGPARNHPRDSMRIYSQETGAIVISRDVTW 648
S GG Y++I +DD TR++ +YF++ KS++ A E++LA+ R +G P +++RSD+ + + F +CRK+ IK+EFT A++P+ NGVAER L LI AA + Q + G P LW + +C+ LNCT+TTSN +PYE WHG PP L+P Y++ R +K E +A+ FYLGP N RD +RI +++ AI +R+ TW
Sbjct: 596 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGA--PNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAIT-TRNFTW 812 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145526.3112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig145526.3112.1 >prot_H-elongata_contig145526.3112.1 ID=prot_H-elongata_contig145526.3112.1|Name=mRNA_H-elongata_contig145526.3112.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp MKYSIIFRDDATRYSWLYFMRKKSESPNALEQFLADTRKHGPPVIMRSDDback to top mRNA from alignment at H-elongata_contig145526:637..1284- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig145526.3112.1 ID=mRNA_H-elongata_contig145526.3112.1|Name=mRNA_H-elongata_contig145526.3112.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=648bp|location=Sequence derived from alignment at H-elongata_contig145526:637..1284- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig145526:637..1284- >mRNA_H-elongata_contig145526.3112.1 ID=mRNA_H-elongata_contig145526.3112.1|Name=mRNA_H-elongata_contig145526.3112.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig145526:637..1284- (Himanthalia elongata Himel1 dioecious)back to top |