prot_H-elongata_contig145485.3109.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig145485.3109.1
Unique Nameprot_H-elongata_contig145485.3109.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
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BLAST of mRNA_H-elongata_contig145485.3109.1 vs. uniprot
Match: D8LL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL29_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.160e-19
Identity = 58/110 (52.73%), Postives = 67/110 (60.91%), Query Frame = 0 
Query:    1 MSLSLKEQADEAASVETARLEAKEAKIKNDSKDKGGEADAVASLSKEGKTRKVVRNAGTKAG--------RKEMCMVKSTLGRLKRRVDGFWYSRLPFSGASGFRRRVLL 102
            M LSLK+QAD  AS ETAR EAKEA IK  S+ K G+A+A                              RKE+  VKSTLGRL+RRVDGFWYS+ PF+GASGFR+RVLL
Sbjct:    1 MGLSLKQQADTVASAETARFEAKEADIKKTSQ-KAGDAEAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKELSKVKSTLGRLQRRVDGFWYSKFPFAGASGFRKRVLL 109
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BLAST of mRNA_H-elongata_contig145485.3109.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.030e-16
Identity = 58/115 (50.43%), Postives = 68/115 (59.13%), Query Frame = 0 
Query:    1 MSLSLKEQADEAASVETARLEAKEAKIKNDSKDKGGEADAVASLSKEGKTRKVVRNAGTKAG-------------RKEMCMVKSTLGRLKRRVDGFWYSRLPFSGASGFRRRVLL 102
            M LSLK+QAD  AS ETAR EAKEA+IK  S+ K G+A+A                                   RKE+  VKSTLGRL+RRVDGFWYS+ PF+GASGFR+RVLL
Sbjct:  367 MGLSLKQQADTVASTETARFEAKEAEIKKASQ-KAGDAEAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKELSKVKSTLGRLQRRVDGFWYSKFPFAGASGFRKRVLL 480
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145485.3109.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL29_ECTSI3.160e-1952.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWU5_9PHAE1.030e-1650.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145485contigH-elongata_contig145485:415..1117 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145485.3109.1mRNA_H-elongata_contig145485.3109.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig145485 415..1117 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig145485.3109.1 ID=prot_H-elongata_contig145485.3109.1|Name=mRNA_H-elongata_contig145485.3109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MSLSLKEQADEAASVETARLEAKEAKIKNDSKDKGGEADAVASLSKEGKT
RKVVRNAGTKAGRKEMCMVKSTLGRLKRRVDGFWYSRLPFSGASGFRRRV
LL
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