mRNA_H-elongata_contig14536.3107.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14536.3107.1
Unique NamemRNA_H-elongata_contig14536.3107.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: D7FW26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW26_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 1.770e-97
Identity = 193/413 (46.73%), Postives = 260/413 (62.95%), Query Frame = 1
Query:    1 MVASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGR-AFLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYDGDSEECFRSATSIIFIYLVVFQFIFFSWGFHALGNNNALELNISRQS--TDLGGSTGVVEESFKTK--RGDGLTQANVDVVSNSVQNTEEYNKIPIDTR--------DGSMALMPAVEEG*-----KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASLMQVPKVSLENQDAIWSGQ-------------RLMMGALHVVCRLIAFPLFGFIAFWMARNTSLVMGSNRLMYLVLLIEFSVPSASLNIVSLNQLRMPATAGFMARLYIVQYFISMFTISAWIAIALNMLY 1146
            M A  G+TLT  +L+D+WQ+ V  S TI  S   + L GR +F RP+ RR F P  LAIAFPN+  FPLLL+++LC+Q+ IN D+D D  ECF  AT +IFIY+VV+Q  F+SWGF+ALG ++ LE  ++ ++  +    +T  VE S   +  +GD L     +  S     T +   +   +R         G+ A   A ++G       WA     L R + SPN+IA+AI + I+ IP LQE LF NP+A L PLGAA++T+G+PTV +ST+VMA SL+QVP V   +  A   GQ             R+++G LHVVCRLI  P  GF  FW+ARN S VMG NRLM+L+LLIE ++PSA+  IVSLNQLRMPATAGFMARLY+ QY  SM TI+AW A+A++++Y
Sbjct:   59 MTAGTGATLTPGTLQDAWQLVVTGSFTIGFSGVVAWLVGRVSFRRPEDRRAFRPAALAIAFPNSAGFPLLLVDALCEQDYINSDFDDDEVECFTQATGMIFIYVVVWQVWFYSWGFYALGQDDELERKLAGEAAKSPSEATTDDVEISSPCEIAQGDALPPRQAEGGSGRQSPTHDGAVVVGASRRNEGVSGTSGTAAASHAGKDGDDEGCCSWAGLRRRLWRLVVSPNMIAVAIGVTIAMIPALQEQLFDNPRAVLRPLGAAVETIGSPTVAVSTLVMAGSLVQVPTVGAASAAASQGGQGDDDGTLRRWRRFRILVGFLHVVCRLIVVPAVGFTLFWVARNQSSVMGENRLMHLILLIELAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMVTITAWTALAVHLVY 471          
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A6H5JAX8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAX8_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 3.720e-97
Identity = 190/406 (46.80%), Postives = 250/406 (61.58%), Query Frame = 1
Query:    1 MVASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGRAFLR-PQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYDGDSEECFRSATSIIFIYLVVFQFIFFSWGFHALGNNNALELNISRQST----------DLGGSTGVVEESFKTKRGDGLTQANVDVVSNSVQNTEEYNKIPIDTRDGSMALMPAVEEG*KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASLMQVPKVSLENQDAIWSGQ-------------RLMMGALHVVCRLIAFPLFGFIAFWMARNTSLVMGSNRLMYLVLLIEFSVPSASLNIVSLNQLRMPATAGFMARLYIVQYFISMFTISAWIAIALNMLY 1146
            M++SLG+TL   +L++SWQ+ VA S T+ +S   + + GR F R P+ RR F P  LAI F N+  FPLLLM +LC+Q+ +  DY+ D+ ECF  AT +IFIY+VV+Q  FF WGF+ALG+++ LE +++ Q T               T     + +   G G   A   VV +    T E +     T  G       V EG  WA     + R L SPNII++ I +VI+ I PLQEMLF N ++ L PLGAALQT+GTP V +ST+VMA SL QVP V+  +      GQ             R++ G LHVVCRLI  P  GF  FW+AR  S VMG NRLM+L+LLIEF++PSA+  IVSLNQLRMPATAGFMARLY+ QY  SM TI+AW A+A++++Y
Sbjct:   59 MISSLGATLNPEALKNSWQLVVAGSFTVALSGTVAWVVGRVFFRRPEDRRAFRPAGLAITFANSAGFPLLLMNALCEQDYVRSDYNDDALECFTQATGMIFIYVVVWQMYFFGWGFYALGHDDTLERSLTGQQTRTRTPSTKXXXXXXXTSSTSSARQEHGGVGRINAAEAVVIDIEPCTGEESSSEGTTNAGGTEDGGDVSEGGPWAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNSRSILRPLGAALQTVGTPEVAVSTLVMAGSLAQVPTVAAASTQG---GQGDDDGTLRRKRRFRIIAGFLHVVCRLIVVPAIGFTLFWVARTQSSVMGENRLMHLILLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 461          
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A6H5J918_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J918_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.720e-46
Identity = 180/623 (28.89%), Postives = 250/623 (40.13%), Query Frame = 1
Query:    1 MVASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGR-AFLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYDGDSEECFRSA-------TSIIFI-------------------------YLVVFQFIFFSWGFHALGNNNALELNISRQSTDLGG--STGVVEESFKTK--RGDGLTQANVDVVSNSVQNTEEYNKIPIDTR--------DGSMALMPAVEEG*-----KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQ----------------TLGTPTVTLSTVVMAASLMQVPKVSLENQDAI-------------WSGQRLMMGALHVVCRLIA------------------------------------------------------------------------------------------------------------------------------------------------------------------FPLFGFIAFWMARNTSLVMGSNRLMYLVLLIEFSVPSASLNIVSLNQLRMPATAGFMARLYIVQYFISMFTISAWIAIALNMLY 1146
            M A  G+TLT  +L+D+WQ+ V  S TI  S   + L GR +F RP+ RR F P  LAIAFPN+  FPLLL+++LC+Q+ IN  +   + + F +        T+ ++I                         Y  + Q  F+SWGF+ALG ++ LE  ++ +   +    +T  VE S   +  +GD L     D  S       +   I   +R         G+     A E+G       WA     L R   SPN+IA+AI ++I+ +P LQE+LF +P+A L P GAA++                T+G+PTV +ST+VMA SL+QVP V   +  A              W   R+++G LHVVCRLI                                                                                                                                                                    P  GF  FW+ARN S VMG NRLM+L+LLIE ++PSA+  IVSLNQLRMPATAGFMARLY+ QY  SM TI+AW A+A++++Y
Sbjct:   56 MTAGTGATLTPGTLQDAWQLVVTGSFTIGFSGVVAWLVGRVSFQRPEDRRAFRPAALAIAFPNSAGFPLLLVDALCEQDYIN-RWPTQNTKLFDNVLLWRGVETTGLYIATCELAPRPAACSHTLRRQGFSFHGYGQILQVWFYSWGFYALGQDDELERKLAGEEAKIPSEATTDDVEISSPCEIAQGDALPPLQADGGSGMQSPIHDGAVIVGASRRNEGVSGTGGTAVASHAGEDGDDAGCFSWAGLRRRLWRLAVSPNMIAVAIGVIIAMLPALQELLFDSPRAVLRPFGAAIEVGHCSLAATPVAIEQGTIGSPTVAVSTLVMAGSLVQVPTVGAGSAAATQGVQCDDDGTLRRWRRFRIVVGFLHVVCRLIVGEHADPRAARFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVPAVGFTLFWVARNQSSVMGENRLMHLILLIELAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 677          
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A6H5J8G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8G0_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 4.860e-38
Identity = 94/196 (47.96%), Postives = 126/196 (64.29%), Query Frame = 1
Query:  586 WAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASLMQVPKVSLE-------NQDA--IWSGQRLMMGALHVVCRLIAFPLFGFIAFWMARNTSLVMGSNRLMYLVLLIEFSVPSASLNIVSLNQLRMPATAGFMARLYIVQYFISMFTISAWIAIALNMLY 1146
            W    H     L SP I+A+   IVI  I PLQ+MLF NPQA L PLG A+Q +G PTVT+S++VMA SL+ V  V+ E       N+ A  IW   R + G L V  RL+A P   F  FW+A+  S VMG NRLM+L+LL+EF++P+A++ I  L+Q+R+P TAGF++RL + QY  S  T+S W A+A+ MLY
Sbjct:  427 WEEAKHRAWALLVSPVIVAVVAGIVICTIEPLQDMLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSAVADEAAPPAGGNEVAVPIWRRPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYSSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGFISRLLVWQYAASSITVSFWTALAITMLY 622          
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: D7FW24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW24_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 3.810e-33
Identity = 81/162 (50.00%), Postives = 106/162 (65.43%), Query Frame = 1
Query:  688 MLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASLMQVPKV------SLENQDA---IWSGQRLMMGALHVVCRLIAFPLFGFIAFWMARNTSLVMGSNRLMYLVLLIEFSVPSASLNIVSLNQLRMPATAGFMARLYIVQYFISMFTISAWIAIALNMLY 1146
            MLF NPQA L PLG A+Q +G PTVT+S++VMA SL+ V  V      S    +A   IW   R +MG L V  RLIA P   F  FW A+  S VMG NRLM+L+LL+EF++P+A++ I  L+Q+R+P TAGF++RL + QY  S  T+S W A A+ MLY
Sbjct:    1 MLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSAVANGAAPSAGGHEAAVPIWRRPRFVMGFLLVFLRLIAIPAAFFGVFWGAKTYSSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGFISRLLVWQYAASSITVSFWTAFAITMLY 162          
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A835Z6D5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D5_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.320e-17
Identity = 87/337 (25.82%), Postives = 143/337 (42.43%), Query Frame = 1
Query:    7 ASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGRAFLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYDGDSEECFRSATSIIFIYLVVFQFIFFSWGFHALGN--------------NNALELNISRQ--------------------------------------STDLGGSTGVVEESFKTKRGDGLTQANV-----DVVSNSVQNT-----------EEYNKIPI--------DTRDGSMALMPAVEEG*KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAA 789
            AS+G+ L+ S L +   + VA ++   +S+       +  L P   R F  V++A+ F N G+ PLL MESLC Q+ +N DYDG + ECF +ATS+IF+YL+ +   F+SWGF+ L                +N L ++I+                                             G     + S      D  T A       D +   + ++           ++  + P         D R   +A +P  +    W      + RA+ SP  +A+ + + I  +P L+E +F +  + L P+GAA+ T+G PT+ L T++MAA
Sbjct:   16 ASMGANLSTSLLLEYSPLLVADTVIRAISWVVITACEK--LLPVEPRLFKAVKIAVLFCNVGSIPLLYMESLCDQDIVNADYDGSASECFAAATSMIFVYLITWHIWFYSWGFYELAKADDLDEKPTALPPVDNFLGVSITGDFDRPHSMAVSVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAGGARTFKLSAAASECDSTTGARAAARAPDALLPPLSHSRCGSAASGPAADKAARAPAFASAAANPDVRANGLAPLPEKQRW--WLGGAGGVWRAVVSPPNVAVLLGVTIGVVPALREGMFHDATSPLRPIGAAIVTIGQPTIALQTLLMAA 348          
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A1Z5JCX7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCX7_FISSO)

HSP 1 Score: 84.7 bits (208), Expect = 2.890e-14
Identity = 73/275 (26.55%), Postives = 121/275 (44.00%), Query Frame = 1
Query:   37 SLRDSWQVAVAASLTIFVSFATSELFGRAFLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYD-----------GDSEECFRSATSIIFIYLVVFQFIFFSWGFHAL---------GNNNALELNISRQSTDLGGST--GVVEESFKTKRGDGLTQANVDVVSNSVQNTEEYNKIPIDTRDGSMALMPAVEEG*KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASL 795
            S+ D W + VAA  T+ +S+A + + G   L P+   +F+ +++A  +PN  A P+L+  SLC+   +  ++            G  E C   A S+IF+Y   + F FF++G   L           +   E+++SR    LG     G  E S  T+     +   +  V+N+++ T                                     LSSP  + +A  IV   I PL++ LF  P A L  +G A+ T+G  + ++ST+V+AASL
Sbjct:   76 SIGDYWFLVVAAFATVGLSYAVATILGYIML-PRLEEDFMALRIAATYPNTVALPILIFPSLCEHAVVYENFTMNRTSSDSTGMGPIEACTADANSMIFVYFFGWSFCFFTFGLPELMRAAEAKQQSEDQTAEISLSRMDESLGTEVLQGNAERSSNTRSAKTSSTLFLQTVTNAIKQT-------------------------------------LSSPGFLTMAAGIVTGCIGPLRDALF-EPGAPLRFIGDAIHTMGIASSSVSTIVVAASL 311          
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A1Z5K3J2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3J2_FISSO)

HSP 1 Score: 79.3 bits (194), Expect = 1.760e-12
Identity = 73/264 (27.65%), Postives = 125/264 (47.35%), Query Frame = 1
Query:   37 SLRDSWQVAVAASLTIFVSFATSELFGRAFLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDY-----DGDS------EECFRSATSIIFIYLVVFQFIFFSWGFHALGNNNALELNISRQSTDLGGSTGVVEESFKTKRGDGLTQANVDVVSNSVQNTEEYNKIPIDTRDGSMALMPAVEEG*KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASL 795
            S+ D W + VAA  ++ +S+  + + G   L P+   +F  +++A  +PN  A P+L+  SLC+   +  ++       DS      E C   A S+IF+Y   + F FF++G   L      +     Q+ ++  S   ++ES  T+    + Q N +  SN+       NK        S   +  V          +++ +  SSP  +A+A  IV   I PL++ LF  P A L  +G A+ T+G  + ++ST+V+AASL
Sbjct:   76 SIGDYWFIVVAAFSSLGLSYVVATVLGYMML-PRLEEDFKALRIAATYPNIVALPILIFPSLCEHAVVYENFTINRTSSDSTSLSPIEACTADANSMIFVYFFGWSFCFFTFGLPELMRAAEAKQQSEDQTAEI--SLSRMDESLGTE----VLQGNAERSSNA----RSTNK--------SSTFLQTVT---------NVIKQTFSSPGFLAMAAGIVTGCIGPLRDALF-EPGAPLRFIGDAIHTMGIASSSVSTIVVAASL 310          
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: B8BS46_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS46_THAPS)

HSP 1 Score: 78.6 bits (192), Expect = 3.560e-12
Identity = 107/462 (23.16%), Postives = 200/462 (43.29%), Query Frame = 1
Query:    7 ASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGRA-FLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDY--DGD--SEE---------CFRSATSIIFIYLVVFQFIFFSWGFHALGNNNALELNISRQSTDLGGSTGVV---EESFKT-----------KRGDGLT-QANVDVVSNSVQNTEEYNKIPIDTRDGSMALMPAVEEG*KWAAKGHLLLRALSSPNIIAIAIAIVISAIPPLQEMLFGNPQAALWPLGAALQTLGTPTVTLSTVVMAASLMQVP---------KVSLENQD-------------------------------------------AIWSGQRL-----MMGALHVVCRLIAFPLFGFIAFWMARNTSLVMGSNRLMYLVLLIEFSVPSASLNIVSLNQLRMPATAGFMARLYIVQYFISMFTISAWIAIAL 1134
            A+L S++T   +   W V V+A   I +SF  + L G+  F R + + +F  +++A AFPN  A P+L+  +LC+   ++  +  +GD  +EE         C   + ++IF+Y   + F+++  G+  L    + +  I  + T L   T VV   ++SF+            +   GL  +    V+ N     EE   IP + +  S+  + A             L + +SSP  +A+ +  + + IPPL++ LF  P  AL   G+A+++LG+ + ++ T+++AASL+            + S+E+ D                                           A+ S ++L      M A  +  RLI  P    +         ++     L  +V+++   +P A L +++L    +  +A  +A++Y+  Y +S  TI+AW +I L
Sbjct:   60 ATLASSVTPEKIGSLWFVLVSAFGVISLSFGVATLLGKLPFFRVENKIDFDALRIAAAFPNIVALPILIFPTLCEFAVVHDSFYTEGDDVNEEATQVEKYRSCVDQSNAMIFVYFFAWNFLYWVLGYETLVRAGS-KRQIHNEET-LSTETSVVHNTDDSFEAVNHHQXXXLEQEENGGLEGRVTPKVIENECTTGEEV-AIPNEDKKTSVLRLIATA-----------LFKTISSPGFVAMILGFITACIPPLRDALF-EPGGALRFFGSAMESLGSASSSVGTIIVAASLVHQANDDNIRDGREDSIEHDDNATQTHQLHNECESSDTIQQTQSTRRRSSMSQFGGMVRRRSSLALQSIRKLRKPTLQMHAWFITSRLIVAPAIVSLIIIGMDCGGILSDIPSLAKMVVIVNAGLPGAQLCVITLKSKGLTDSASIVAKVYLPSYLLSAVTIAAWTSIGL 506          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FW26_ECTSI1.770e-9746.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAX8_9PHAE3.720e-9746.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5J918_9PHAE2.720e-4628.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8G0_9PHAE4.860e-3847.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW24_ECTSI3.810e-3350.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z6D5_9STRA2.320e-1725.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5JCX7_FISSO2.890e-1426.55Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5K3J2_FISSO1.760e-1227.65Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
B8BS46_THAPS3.560e-1223.16Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14536contigH-elongata_contig14536:189..3219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue1.2e-28
Seed eggNOG ortholog2880.D7FW26
KEGG koko:K07088
EggNOG free text desc.auxin efflux carrier
EggNOG OGsCOG0679@1,KOG2722@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Exons7
Model size1146
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14536.3107.1prot_H-elongata_contig14536.3107.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14536 1516..3219 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929862.4948103-UTR-H-elongata_contig14536:188..3231622929862.4948103-UTR-H-elongata_contig14536:188..323Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14536 189..323 -
1691679187.2531183-UTR-H-elongata_contig14536:188..3231691679187.2531183-UTR-H-elongata_contig14536:188..323Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14536 189..323 -
1622929862.5115666-UTR-H-elongata_contig14536:664..7811622929862.5115666-UTR-H-elongata_contig14536:664..781Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14536 665..781 -
1691679187.270226-UTR-H-elongata_contig14536:664..7811691679187.270226-UTR-H-elongata_contig14536:664..781Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14536 665..781 -
1622929862.526736-UTR-H-elongata_contig14536:999..11521622929862.526736-UTR-H-elongata_contig14536:999..1152Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14536 1000..1152 -
1691679187.2792592-UTR-H-elongata_contig14536:999..11521691679187.2792592-UTR-H-elongata_contig14536:999..1152Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14536 1000..1152 -
1622929862.5450954-UTR-H-elongata_contig14536:1356..15151622929862.5450954-UTR-H-elongata_contig14536:1356..1515Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14536 1357..1515 -
1691679187.2889528-UTR-H-elongata_contig14536:1356..15151691679187.2889528-UTR-H-elongata_contig14536:1356..1515Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14536 1357..1515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929862.5602798-CDS-H-elongata_contig14536:1515..15171622929862.5602798-CDS-H-elongata_contig14536:1515..1517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14536 1516..1517 -
1691679187.2975717-CDS-H-elongata_contig14536:1515..15171691679187.2975717-CDS-H-elongata_contig14536:1515..1517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14536 1516..1517 -
1622929862.5741436-CDS-H-elongata_contig14536:1757..20161622929862.5741436-CDS-H-elongata_contig14536:1757..2016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14536 1758..2016 -
1691679187.306581-CDS-H-elongata_contig14536:1757..20161691679187.306581-CDS-H-elongata_contig14536:1757..2016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14536 1758..2016 -
1622929862.5882099-CDS-H-elongata_contig14536:2267..23431622929862.5882099-CDS-H-elongata_contig14536:2267..2343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14536 2268..2343 -
1691679187.3153994-CDS-H-elongata_contig14536:2267..23431691679187.3153994-CDS-H-elongata_contig14536:2267..2343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14536 2268..2343 -
1622929862.6086388-CDS-H-elongata_contig14536:2974..32191622929862.6086388-CDS-H-elongata_contig14536:2974..3219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14536 2975..3219 -
1691679187.3252254-CDS-H-elongata_contig14536:2974..32191691679187.3252254-CDS-H-elongata_contig14536:2974..3219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14536 2975..3219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14536.3107.1

>prot_H-elongata_contig14536.3107.1 ID=prot_H-elongata_contig14536.3107.1|Name=mRNA_H-elongata_contig14536.3107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
MVASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGRAFLRPQARRE
FVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYDGDSEECFRSATSIIF
IYLVVFQFIFFSWGFHALGNNNALELNISRQSTDLGGSTGVVEESFKTKR
GDGLTQANVDVVSNSVQNTEEYNKIPIDTRDGSMALMPAVEEG*
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mRNA from alignment at H-elongata_contig14536:189..3219-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14536.3107.1 ID=mRNA_H-elongata_contig14536.3107.1|Name=mRNA_H-elongata_contig14536.3107.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3031bp|location=Sequence derived from alignment at H-elongata_contig14536:189..3219- (Himanthalia elongata Himel1 dioecious)
ATGGTGGCTAGTTTAGGGTCTACCCTGACTCTCTCATCCCTGCGAGACTC CTGGCAGGTTGCCGTAGCCGCGAGCTTGACGATATTCGTGTCTTTCGCCA CGTCGGAGTTGTTCGGGCGAGCTTTTCTCCGACCTCAAGCTCGCCGCGAA TTTGTACCGGTGCAACTGGCAATTGCTTTCCCAAACGCAGGAGCGTTTCC TCTTCTCCTGATGGAATCGCTGTGCCAGCAAGAAGCGATCAATATGTGGG AACACTGAGCCAGCGTTTCGTAACAACCGTAGTTTAAGTCTTTGTTATGT AAAGGTTTCGTAGTGTCTAGATTGCATTTCAATTTGAAGCGAACCGCAAT ATAAATATAGTGTCTCTTTCTTCCTTTCTACGGAAAATTCCCTTCGATGA CTGGGGCCCGAGCTGTGCTATAGGACCCTACATGATAATATTAAGCTTTT TAGTCGGGATTTTATCTTCTTTCGTTTTTCAAGGTGTAGACTAAATAATA TGTTGTCATTCCACTTATGTTGGACGTCAAATTTGTGGACGCACCAGCCG GGGTCATACAGGAAGAAGGTCACACATGATTCTACATCCTTCTGCGATGC TTGCCTTCATTTTTGATCGCGAGAAGGATTCAACAGCCCCCCTTTCTCTT GTTGGCCGTGAAGTCGAAATTTGTGTACCCACGAAATAATCGTTCTCCAC TTGTTGGGCATGATATGAGATAAAATAAAAGTTATACAAATTCGTAAGAA TGTGCCAAGATTCGATATCACGCCCCAGCGTTAGACATTTTCGACGCTAT CAACTGAACCACTGGGACAGCCGCTTTTTTTACATGAACCCCTCGTTCTT TTTATCAATTATTTTTCGGCGTCCAGCGATTATGACGGTGACTCTGAGGA ATGCTTCAGAAGCGCGACATCAATTATCTTCATCTACTTGGTGGTATTTC AGGTACTATGAGATCAAGAAAGAGTGCATATACGTTTGGGTGCATGTGGC GTTACATCTTTGATTTCGACACTATCTGGGACATATTTTCGTACATATCG GTATTATACCAATATTTGAAGGGACAGCGTTTTCCGATCTGGGCTACAAT ATAATAGGTTGTCGCCCGCTGAGCTCTCTGGCCCATCGACCGGTAGCAAG GGACAAATGGTAATGGCGGCCGCTCTAACGCATTTCACCCAATTTCCTTG CAGTTTATCTTCTTCTCTTGGGGCTTTCACGCTCTCGGAAACAATAATGC ACTGGAGCTCAATATTTCGAGGCAGTCAACTGATTTGGGTGGATCGACCG GGGTTGTTGAGGAGTCCTTTAAAACGAAGCGTGGAGACGGTTTAACTCAG GCCAATGTCGATGTTGTCAGCAACAGCGTACAGAACACGGAGGAGTATAA CAAGATACCGATCGACACCCGCGACGGTAGCATGGCCTTGATGCCGGCTG TAGAAGAGGGCTGTCTTGTGGCCTACGATAACTACCAACAAGACAAGAAT ATTCAACAGCGGAAGGATCAAATGAGCGGGTCGCAAGAAGTTGTCCCATC AATCCCGGGGACGACGAAGGAGGGTTCTCCTCTCCTCATGAAACAGGTGG TCATACCCACCACATATGCACCGAAAAAAAATGGAGCTTATCCGTCAGAG ACTTTTGATACGAGAGGTATCGAACGCATCTGCGATAGTCCCATTCGTGA AGGAAAATGGGCAGCGAAAGGGCATCTTCTGCTGAGAGCTTTGTCCTCAC CGAACATCATCGCAATTGCCATAGCGATTGTGATATCCGCTATCCCACCG CTACAAGAAATGCTATTCGGCAACCCTCAAGCGGCTCTCTGGCCTTTGGG AGCAGCACTGCAAGTGAGATAATCCACGTCGTGAATGCGACGCCCGCGGA GTAACACCAAAAACACCCATTTTACTTCCTCTGGGCTTGTGCTAAGATGG CGTTGCACATCATCGATACATTCAGGAAATCTCTAACCTCTCTTGATCAT TCATGCCACCGACGTATTGTTAGCGCTTTGAAGTTCCGGACGTTCCCCCT CCTTTTGTCACCGTCAGACTCTAGGTACTCCTACCGTGACTTTATCGACG GTGGTCATGGCAGCAAGCCTTATGCAAGTGCCCAAGGTGTCACTGGAGAA TCAAGATGCAATTTGGAGTGGGCAACGCCTCATGATGGGTGCCCTCCACG TGGTTTGCCGCCTCATAGCGGTGAGAACACACTCAGCATGATTATGTGTC CATCACTTCAGTTGCGCTTCTCGCGTATAAGTTTAACTTGTGCTCTATTT CCGCCTTGAAAACATCAAGGTCCCCTATATTCGCGATGCCCCAGCGCCTA TATAATTTTAATTAAAAAAACATGAACTCATTTCAACCCTCCGAACATCC ACTGTTTCAACTTCATGCCCACTCAATGTGGCCGAAAGTTTCCTCTCTTT GGATTCATTGCGTTTTGGATGGCGAGGAACACGAGCTTGGTGATGGGTTC AAACCGCCTCATGTACCTCGTTCTTCTCATCGAATTCTCGGTGCCCTCAG CTTCGGTGAGTACTTAATTTCACAATAGGCATCATCAGTTGAGATCTGGC CAGTTTACGTTGCATATCTCTTCGACTGAGCGAATTCGCATCGCGGTCTA CCATATCTGCGAAAGTTAGCTTTCAACTAGGGAACCTAAGCTCTCCGCGT GTTCGAAATTTTATATCTTTACGTCGCGACTGAACGACTGTAATAAAGCA AACCGTTATGCCCTTTTAAGAGCCGATTAAAACCAAGTGTTTTTGAATTG CAAGCCCGAACAGTCCTCCTTTTGTGTGACCTACTCTTCCCTTCCTTGCG TTCTCTGACTCGTTATATCACGCTCGCTTCTTCTTGAATGTCGCAGCTGA ATATTGTGTCACTGAATCAGCTGAGGATGCCTGCCACGGCAGGATTCATG GCAAGGCTCTACATAGTACAGTATTTCATCTCCATGTTCACAATAAGCGC TTGGATCGCCATCGCTCTAAATATGCTGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig14536:189..3219-

>mRNA_H-elongata_contig14536.3107.1 ID=mRNA_H-elongata_contig14536.3107.1|Name=mRNA_H-elongata_contig14536.3107.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig14536:189..3219- (Himanthalia elongata Himel1 dioecious)
ATGGTGGCTAGTTTAGGGTCTACCCTGACTCTCTCATCCCTGCGAGACTC
CTGGCAGGTTGCCGTAGCCGCGAGCTTGACGATATTCGTGTCTTTCGCCA
CGTCGGAGTTGTTCGGGCGAGCTTTTCTCCGACCTCAAGCTCGCCGCGAA
TTTGTACCGGTGCAACTGGCAATTGCTTTCCCAAACGCAGGAGCGTTTCC
TCTTCTCCTGATGGAATCGCTGTGCCAGCAAGAAGCGATCAATATATGGT
GGCTAGTTTAGGGTCTACCCTGACTCTCTCATCCCTGCGAGACTCCTGGC
AGGTTGCCGTAGCCGCGAGCTTGACGATATTCGTGTCTTTCGCCACGTCG
GAGTTGTTCGGGCGAGCTTTTCTCCGACCTCAAGCTCGCCGCGAATTTGT
ACCGGTGCAACTGGCAATTGCTTTCCCAAACGCAGGAGCGTTTCCTCTTC
TCCTGATGGAATCGCTGTGCCAGCAAGAAGCGATCAATATCGATTATGAC
GGTGACTCTGAGGAATGCTTCAGAAGCGCGACATCAATTATCTTCATCTA
CTTGGTGGTATTTCAGCGATTATGACGGTGACTCTGAGGAATGCTTCAGA
AGCGCGACATCAATTATCTTCATCTACTTGGTGGTATTTCAGTTTATCTT
CTTCTCTTGGGGCTTTCACGCTCTCGGAAACAATAATGCACTGGAGCTCA
ATATTTCGAGGCAGTCAACTGATTTGGGTGGATCGACCGGGGTTGTTGAG
GAGTCCTTTAAAACGAAGCGTGGAGACGGTTTAACTCAGGCCAATGTCGA
TGTTGTCAGCAACAGCGTACAGAACACGGAGGAGTATAACAAGATACCGA
TCGACACCCGCGACGGTAGCATGGCCTTGATGCCGGCTGTAGAAGAGGGC
TTTTATCTTCTTCTCTTGGGGCTTTCACGCTCTCGGAAACAATAATGCAC
TGGAGCTCAATATTTCGAGGCAGTCAACTGATTTGGGTGGATCGACCGGG
GTTGTTGAGGAGTCCTTTAAAACGAAGCGTGGAGACGGTTTAACTCAGGC
CAATGTCGATGTTGTCAGCAACAGCGTACAGAACACGGAGGAGTATAACA
AGATACCGATCGACACCCGCGACGGTAGCATGGCCTTGATGCCGGCTGTA
GAAGAGGGCTGAGA
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