mRNA_H-elongata_contig14534.3103.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig14534.3103.1
Unique Name	mRNA_H-elongata_contig14534.3103.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig14534.3103.1 vs. uniprot
Match: A0A6H5KL58_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL58_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.320e-5
Identity = 72/242 (29.75%), Postives = 103/242 (42.56%), Query Frame = 1

Query:  220 GVSEEAERAEEAGTDFLTELRERFSLAPKDIIASHDDDDNDDLAVLVAEGNPLSVGLGSHPSKEGAAAAEALNNDLALPLVVSLVTKDRGGRTLPASDVDSGLVCVDLGGEDASSDGVGGVGNEDKKPADSFLRERTEQRYRPGKKVTGKATDLDFSASMIDMEGRASGGVDAGGEQREETSRGRSDNGSSTNRDSSVLSLQEIKKMKTADLKAELRGRGLRLSGNKAELLARLEETLEQAA 945
            G S+ A+  EEAG DFL ELR+RF++  +++ +  D D       L+A+ + L  G  S+   E    A A+   +        VT   G   +  +D D  +       ED  S+            AD  + E           +  +A   D S                   Q E+T++ +             L L+  K MK  DLK EL+GRGLR+SGNKAELLARLE+ L+Q A
Sbjct:  607 GGSQAADGEEEAGADFLEELRQRFAVETEELASDSDLD-------LLAD-DVLLAGANSYGEVETNGEAGAVTTSVH-------VTGAVGDSPVSGADGDDRMP------EDGRSE------------ADETVAE-----------IADEAVRSDISG------------------QGEDTNKAQ-------------LVLEGFKTMKVTDLKVELKGRGLRVSGNKAELLARLEKALQQPA 773

[Close]

BLAST of mRNA_H-elongata_contig14534.3103.1 vs. uniprot
Match: D8LB51_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB51_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 5.620e-5
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  814 LSLQEIKKMKTADLKAELRGRGLRLSGNKAELLARLEETLEQAA 945
            L L+  K MK  DLK EL+GRGLR+SGNKAELLARLEE L+Q A
Sbjct:  871 LVLEGFKAMKVTDLKVELKGRGLRVSGNKAELLARLEEALQQPA 914

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig14534.3103.1 vs. uniprot

BLAST of mRNA_H-elongata_contig14534.3103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KL58_9PHAE	2.320e-5	29.75	SAP domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LB51_ECTSI	5.620e-5	70.45	SAP domain-containing protein n=1 Tax=Ectocarpus s...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig14534	contig	H-elongata_contig14534:1725..4142 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	2109
Cds size	906
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig14534.3103.1	prot_H-elongata_contig14534.3103.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig14534 1791..3005 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929862.1102514-UTR-H-elongata_contig14534:1724..1790	1622929862.1102514-UTR-H-elongata_contig14534:1724..1790	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig14534 1725..1790 +
1691679187.1029177-UTR-H-elongata_contig14534:1724..1790	1691679187.1029177-UTR-H-elongata_contig14534:1724..1790	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig14534 1725..1790 +
1622929862.1566038-UTR-H-elongata_contig14534:3005..4142	1622929862.1566038-UTR-H-elongata_contig14534:3005..4142	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig14534 3006..4142 +
1691679187.143535-UTR-H-elongata_contig14534:3005..4142	1691679187.143535-UTR-H-elongata_contig14534:3005..4142	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig14534 3006..4142 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929862.126389-CDS-H-elongata_contig14534:1790..2567	1622929862.126389-CDS-H-elongata_contig14534:1790..2567	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14534 1791..2567 +
1691679187.1156898-CDS-H-elongata_contig14534:1790..2567	1691679187.1156898-CDS-H-elongata_contig14534:1790..2567	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14534 1791..2567 +
1622929862.1439013-CDS-H-elongata_contig14534:2876..3005	1622929862.1439013-CDS-H-elongata_contig14534:2876..3005	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14534 2877..3005 +
1691679187.130051-CDS-H-elongata_contig14534:2876..3005	1691679187.130051-CDS-H-elongata_contig14534:2876..3005	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14534 2877..3005 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig14534:1725..4142+
coding sequence from alignment at H-elongata_contig14534:1725..4142+

protein sequence of mRNA_H-elongata_contig14534.3103.1

>prot_H-elongata_contig14534.3103.1 ID=prot_H-elongata_contig14534.3103.1|Name=mRNA_H-elongata_contig14534.3103.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=302bp
MSGSGEQYPGSSTPRAPATSAENMSPSRGTVHGGGAAAVVSSAGGGEREL
VGVSEEAERAEEAGTDFLTELRERFSLAPKDIIASHDDDDNDDLAVLVAE
GNPLSVGLGSHPSKEGAAAAEALNNDLALPLVVSLVTKDRGGRTLPASDV
DSGLVCVDLGGEDASSDGVGGVGNEDKKPADSFLRERTEQRYRPGKKVTG
KATDLDFSASMIDMEGRASGGVDAGGEQREETSRGRSDNGSSTNRDSSVL
SLQEIKKMKTADLKAELRGRGLRLSGNKAELLARLEETLEQAATLKDRSR
Q*

mRNA from alignment at H-elongata_contig14534:1725..4142+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig14534.3103.1 ID=mRNA_H-elongata_contig14534.3103.1|Name=mRNA_H-elongata_contig14534.3103.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2418bp|location=Sequence derived from alignment at H-elongata_contig14534:1725..4142+ (Himanthalia elongata Himel1 dioecious)
GGGGGCGACCAGGGGGGTCGACGCTCGCGCAACACTATCCCTGATTCTCG
CGGCGCGGGTCGTGTGATGTCCGGAAGTGGAGAGCAATACCCGGGGTCAT
CCACGCCTCGAGCCCCGGCAACATCGGCCGAGAACATGAGTCCCTCGCGC
GGCACAGTCCACGGTGGAGGGGCGGCCGCTGTGGTCTCGTCCGCAGGAGG
AGGAGAACGGGAGTTGGTTGGGGTCAGTGAGGAGGCGGAGAGGGCAGAGG
AAGCCGGGACTGATTTCCTGACCGAGCTTCGAGAACGATTTTCGCTGGCG
CCCAAAGATATCATCGCTTCGCATGACGACGACGATAACGACGACCTCGC
GGTGCTCGTGGCGGAGGGTAACCCGCTGTCGGTCGGTTTGGGGTCTCACC
CCTCCAAAGAGGGTGCTGCTGCTGCAGAGGCTCTTAATAATGACCTGGCA
CTTCCTTTGGTGGTGTCGCTGGTCACGAAGGACAGGGGAGGGAGGACGCT
TCCGGCAAGCGACGTTGATTCTGGCCTAGTTTGCGTCGATCTCGGTGGCG
AGGACGCGAGCAGTGATGGCGTAGGTGGCGTCGGCAATGAAGATAAAAAA
CCGGCAGATTCATTTTTAAGAGAGAGGACAGAGCAAAGGTATCGTCCTGG
AAAAAAAGTGACCGGCAAGGCGACCGATTTGGACTTTTCGGCGAGCATGA
TCGATATGGAGGGCAGAGCTTCCGGAGGAGTAGATGCAGGCGGCGAGCAG
CGAGAGGAGACGAGTAGGGGCCGTAGCGACAACGGCAGCAGCACTAATAG
GGACTCCTCCGTGCTGTCGCTCCAGGAGATCAAGAAGATGAAGGTGTGCG
ACGCCGCTTATATCGCTCGCGTATTTTTTCCTGCTACCTGCTTATCTGGC
GCCAAGTGCTGTGAGAGCGGAAGTTTGCACTTTCCCCCCCACCTTTTAAC
GAGTTTTCGAGAAAGGAGAGAGAGTGTGTGTATGATGTTGTTGGTTGTCT
TTGGTGAGGAGTACAGCTCTTTGGTAGCTCGAGTCGGAACGTCTTCTTTT
CTCCAGGAAAACCTAGGGAGCACGTCCGAATTCGCCTACCCGTCCAAAAC
TGTCGCGATTTTTAAACTCCGAGTCCTCGCTATCAAAATATTTTGATTTC
AGACCGCGGACCTTAAGGCGGAGCTAAGAGGGAGAGGGCTCAGGCTCTCA
GGCAACAAGGCGGAGCTGCTTGCCAGGCTGGAAGAGACCCTTGAGCAAGC
GGCAACGCTAAAAGATCGCTCCCGCCAGTAGCGCGCTTTATTTATTTTTT
CCGAACCATTGCAGAAGCTTTGATGCTCATGGTCATTCAACGTGGCGGAC
GATGGGCGATATCTGGACGTGCACGAGCGTAGTAAATAGAGGTCGCATTT
TCCACGATACTGTTTCGTGAACAATAAAATAAATAAATAAATCATCCTCT
CTTTGGAAGAACGTGGCATGCGGTCGCCAATCGCAGGGTAACGCTCGCAC
ACAAGCCGCACGGACTACCCTAAGTAGAGGCGGGAATAGGCACAAATATC
AAGCTGCGGTTTCTGTTCGTGTATAGTTATCTTTACGGAAGACATGCGTC
GCCAAAAAGGGTTCAAGCTACCCAAAGGCCATACAGTTTGCAAAAAATAT
AAAATCGTCGTCATATCTCGTAGAAAAGTCTCCTATGATCTCTCTCTCCT
CGATACTCTTGATGTTCTGCGAACAGAATCGTTAAGATCGATAGTTTGAG
GGCCTGTATAGTATAGAGCTAGCTGTACAAAATTCGTATAACCTTGATAG
CCTATGTAGTAGACAATGTATTTTTTGGGTACCGAAATGAACTTATTATA
TTGAAACTAGAAGTAGGTCGGATCATTATATTTCTCCAATAATATAGCAG
TGTGTCTGTAGAGTCCTAATGCATGACCTTCAAAATATGTTCCATGTATG
TTTTCCTTTCCGCAACGCTGCGTGTGTATACTCCTGTCCTTTCAGACGAC
TGATGTTGGTGATGCGCCCATAACCAATTGAGTTACAAATTCCCATCACG
ATGGGTGAAATCGTATTTACCTTCTTTTCGTAGTTTTTTATAAAAAAATT
GTACGTTGAAGTAGCTTCTAGAGTATTTAAGTACCTTCAACTGTATGCCC
TGAAATGCGTTGACAAAGTTTGTCTTTCGCTGCTAGTGTCTGTCCCCGCT
CGAGTGTCTAAAGGATGGCATAATATCTTGAGATATAATTGCTTTGGTAT
TACCGATGATGTTTTTTGCCCAAGTCTCGCAGCGTGTCGCAGAGTCCGCT
CGAGTGTCTAAAGGATGACGTAATCTCTTAAAATATAATCGCCTTGGTAT
TGCAGATGATAGATTTATGACCAAGTCTCGAAGCGTGTCACAGCTAGTAA
TATGGCCATAGCCTCTGC

Coding sequence (CDS) from alignment at H-elongata_contig14534:1725..4142+

>mRNA_H-elongata_contig14534.3103.1 ID=mRNA_H-elongata_contig14534.3103.1|Name=mRNA_H-elongata_contig14534.3103.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1812bp|location=Sequence derived from alignment at H-elongata_contig14534:1725..4142+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGGAAGTGGAGAGCAATACCCGGGGTCATCCACGCCTCGAGCCCC
GGCAACATCGGCCGAGAACATGAGTCCCTCGCGCGGCACAGTCCACGGTG
GAGGGGCGGCCGCTGTGGTCTCGTCCGCAGGAGGAGGAGAACGGGAGTTG
GTTGGGGTCAGTGAGGAGGCGGAGAGGGCAGAGGAAGCCGGGACTGATTT
CCTGACCGAGCTTCGAGAACGATTTTCGCTGGCGCCCAAAGATATCATCG
CTTCGCATGACGACGACGATAACGACGACCTCGCGGTGCTCGTGGCGGAG
GGTAACCCGCTGTCGGTCGGTTTGGGGTCTCACCCCTCCAAAGAGGGTGC
TGCTGCTGCAGAGGCTCTTAATAATGACCTGGCACTTCCTTTGGTGGTGT
CGCTGGTCACGAAGGACAGGGGAGGGAGGACGCTTCCGGCAAGCGACGTT
GATTCTGGCCTAGTTTGCGTCGATCTCGGTGGCGAGGACGCGAGCAGTGA
TGGCGTAGGTGGCGTCGGCAATGAAGATAAAAAACCGGCAGATTCATTTT
TAAGAGAGAGGACAGAGCAAAGGTATCGTCCTGGAAAAAAAGTGACCGGC
AAGGCGACCGATTTGGACTTTTCGGCGAGCATGATCGATATGGAGGGCAG
AGCTTCCGGAGGAGTAGATGCAGGCGGCGAGCAGCGAGAGGAGACGAGTA
GGGGCCGTAGCGACAACGGCAGCAGCACTAATAGGGACTCCTCCGTGCTG
TCGCTCCAGGAGATCAAGAAGATGAAGATGTCCGGAAGTGGAGAGCAATA
CCCGGGGTCATCCACGCCTCGAGCCCCGGCAACATCGGCCGAGAACATGA
GTCCCTCGCGCGGCACAGTCCACGGTGGAGGGGCGGCCGCTGTGGTCTCG
TCCGCAGGAGGAGGAGAACGGGAGTTGGTTGGGGTCAGTGAGGAGGCGGA
GAGGGCAGAGGAAGCCGGGACTGATTTCCTGACCGAGCTTCGAGAACGAT
TTTCGCTGGCGCCCAAAGATATCATCGCTTCGCATGACGACGACGATAAC
GACGACCTCGCGGTGCTCGTGGCGGAGGGTAACCCGCTGTCGGTCGGTTT
GGGGTCTCACCCCTCCAAAGAGGGTGCTGCTGCTGCAGAGGCTCTTAATA
ATGACCTGGCACTTCCTTTGGTGGTGTCGCTGGTCACGAAGGACAGGGGA
GGGAGGACGCTTCCGGCAAGCGACGTTGATTCTGGCCTAGTTTGCGTCGA
TCTCGGTGGCGAGGACGCGAGCAGTGATGGCGTAGGTGGCGTCGGCAATG
AAGATAAAAAACCGGCAGATTCATTTTTAAGAGAGAGGACAGAGCAAAGG
TATCGTCCTGGAAAAAAAGTGACCGGCAAGGCGACCGATTTGGACTTTTC
GGCGAGCATGATCGATATGGAGGGCAGAGCTTCCGGAGGAGTAGATGCAG
GCGGCGAGCAGCGAGAGGAGACGAGTAGGGGCCGTAGCGACAACGGCAGC
AGCACTAATAGGGACTCCTCCGTGCTGTCGCTCCAGGAGATCAAGAAGAT
GAAGACCGCGGACCTTAAGGCGGAGCTAAGAGGGAGAGGGCTCAGGCTCT
CAGGCAACAAGGCGGAGCTGCTTGCCAGGCTGGAAGAGACCCTTGAGCAA
GCGGCAACGCTAAAAGATCGCTCCCGCCAGTAGACCGCGGACCTTAAGGC
GGAGCTAAGAGGGAGAGGGCTCAGGCTCTCAGGCAACAAGGCGGAGCTGC
TTGCCAGGCTGGAAGAGACCCTTGAGCAAGCGGCAACGCTAAAAGATCGC
TCCCGCCAGTAG