mRNA_H-elongata_contig14526.3097.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14526.3097.1
Unique NamemRNA_H-elongata_contig14526.3097.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: D7FSW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSW0_ECTSI)

HSP 1 Score: 462 bits (1188), Expect = 5.430e-159
Identity = 239/388 (61.60%), Postives = 284/388 (73.20%), Query Frame = 1
Query:    1 FHPSERVAISASEDGTCRVWDLSTSKCVKVLAAHSKEHEVLRACWAPPGSTHDSIAAATGSADGVVRLWGLGRVERGEGECDGVTGVERYQALRVVGCLRHRNQSKGLDGQVYSCQFVSDQAGGA---SAGTTRLLTASDNSVHLWDLETCKRETSRALSKVGDHSVGGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQPSVLRCRNTATQTGLAWSHDGTILASCGGDGAVTLWDARTWTIMSTLCGHSRSVYGAAFYPGAGR--------------ESEELSTALLLSWSSDETICMWGASRGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSADGRQLAVAGGGSGK--AGLLGVPIKLVCLDDEPKGKGG 1107
            FHP+E  AISASEDGT RVWDLS+ KC K L  H+K+HEVLRACWAPPG+ +DS++ ATGSADG+VRLWG+     G+G  D  +GV+RYQ+L+VVG LRHRN++KGLDGQVYSC F+ D +GGA   SA    LLTASD+SVHLWD+ET KR +SRALSKVG HS+GGERNP DL+FVFDAKPRPG+ S VLAVALSDGTVRVGD+L+   + +VLR       T LAWS DGT+LASCGG+G +T+WD RTWT  S L GHSR VYGAAFY  AG                 ++    LLLSWSSDET+C W   R     TA     PLA+++VE+GFP+YSCSVSADGR+ A+AGGG  +  AG LGVPIKLV L DE + K G
Sbjct:   39 FHPTEDAAISASEDGTARVWDLSSGKCAKSLEGHNKKHEVLRACWAPPGAANDSVSVATGSADGIVRLWGI---RHGDGR-DEKSGVDRYQSLKVVGQLRHRNEAKGLDGQVYSCHFIPDPSGGAPPSSAAAMCLLTASDSSVHLWDVETRKRVSSRALSKVGAHSIGGERNPDDLAFVFDAKPRPGSGSSVLAVALSDGTVRVGDVLQQGEKAAVLRGVTDTHLTSLAWSDDGTVLASCGGNGTITVWDTRTWTARSVLWGHSRPVYGAAFYSCAGNGXXXXXXXXXXXXXXGQDCPPQLLLSWSSDETVCAWDTGRATGDATA-----PLATLSVEEGFPVYSCSVSADGRRFALAGGGGDEKSAGFLGVPIKLVDLSDEARAKDG 417          
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A835YNR1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR1_9STRA)

HSP 1 Score: 146 bits (369), Expect = 9.180e-36
Identity = 111/313 (35.46%), Postives = 145/313 (46.33%), Query Frame = 1
Query:    1 FHPSERV-AISASEDGTCRVWDLSTSKCVKVLAAHSKEHEVLRACWAPPGSTHDSIAAATGSADGVVRLWGLGRVE----RGEGECDGVTGVERYQALRVVGCLRHRNQSKGLDGQVYSCQFVSDQAGGASAGTT-----------------------------RLLTASDNSVHLWDLETCKRETSRALSKVGDHSVGGE-RNPSDLSFVFDAKP-----RPGARSDVLAVALSDGTVRVGDILRGRGQPSVLRCRNTATQ----------------TGLAWSHDGTILASCGGDGAVTLWDARTWTIMSTL 771
            FHP+    A S SEDGT RVWD+     V + +A   + EVLR CWAPPG+    I  A+GSADG+VRLW +        RG    DG +      ALR V  L  +  + G DGQVY+ QF+    GG+S+G                                L+ A+D++V LWD+ T       A S    H+ GG  RNP +  FVFDAK        G     LA ALSDGTVRV  +       ++  C + +                  T +AW+ DG+ LA+CG    V +WDARTWT  + L
Sbjct:   49 FHPTVHSRAASCSEDGTVRVWDVQRG--VSIASAKGSKDEVLRICWAPPGTP--GIDLASGSADGLVRLWAMSAATSTATRGAPGRDGSSAA----ALRCVKTLDVKAAAGG-DGQVYALQFIGADGGGSSSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLMVAADDAVSLWDVGTGVVTRRWAFSSSAQHAHGGAARNPDNQVFVFDAKVCCGSGGSGGGDGTLAAALSDGTVRVQPLDSELPASTLHPCGSGSNSGXXXXXXXXXXXXAHLTAVAWAPDGSALAACGXXXGVEVWDARTWTRRAAL 352          
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S4E2U9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2U9_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.290e-25
Identity = 112/360 (31.11%), Postives = 155/360 (43.06%), Query Frame = 1
Query:   19 VAISASEDGTCRVWDLSTSKCVKVLAAHSKEHEVLRACWAPPGSTHDSIAA---ATGSADGVVRLWGLGRVERGEGECDGVTGVERYQALRVVGCLRHRNQSKGLDGQVYSCQFVSDQAGGASAGTTRLLTASDNSVHLWDLETCKRETSRALSKVGDHSVGGERNPSDLSFVFDAKPRPGARSDVL----AVALSDGTVRVGDILRGRGQPSVLRCRNTATQTGLAWSHDGTILASCGGDGAVTLWDARTWTIMSTLCG-HSRSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGASRGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSADGRQLAVAGGGSGKAGLLGVPIKLV 1074
            + ++ASEDGT +VW L+  +    +A    + EVLR  WAPP    D+  A   A   ADG   LW      RG+           + A + +  L H     G D QVY C +    A G + G   LLTA+  +V  WD+   K         +   S    R   D ++VFD +P P    D L    A A+SDGT RV D+ R      VLR    +  T + W   GT +ASC GDG   +WDARTW ++  L G H+   YGAA   G            + SW++ E +  W          A   +    + A     P++ C+ S+    + V GG  GK   + VP   V
Sbjct:   33 LCVTASEDGTAKVWRLADGRLEGEVAQSQTKDEVLRVAWAPP-IVRDAAGASLLAVAGADGFCNLW------RGDD----------WSAPKSLQRLDH-----GGD-QVYGCAW---SACGDAYGAW-LLTAAGAAVRTWDVNAGK--------SIKQWSYQEPRG--DQAYVFDVQPAPRDADDALRATIACAVSDGTARVRDV-RLDYDARVLRAPGDSKVTAVGWLG-GTAVASCYGDGCCRVWDARTWKLLGRLKGAHASPCYGAAKTDG-----------FVASWAA-EGLAFWSCEDALRKADATKKATAPITDAAGNAVPLFQCAFSSS--NIVVCGGAGGKGDAI-VPSVFV 338          
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S4AKL3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKL3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.500e-16
Identity = 72/225 (32.00%), Postives = 109/225 (48.44%), Query Frame = 1
Query:  454 TSRALSKVGDHSVGGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQP-SVLRCRNTATQ-TGLAWSHDGTILASCGGDGAVTLW-------DARTWTIMSTLC-----GHS--RSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGASRGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSADGRQLAVAGGGSGKAGLLGVPIKLVCL 1080
            T  + +K G  + GGERNPS+  FVFDA   PG  S +L VALSDG++R   ++ GRG   SV++   + +  T   W   G  LA+C G G +  W       D   +   +T       GH   R ++G+ F    G E E L    L+SW  D  +C+W +        + ++  P+A +  +  +PI++  +S   R L V GG  G  G +GVP+    +
Sbjct:  466 TKSSEAKDGSVAFGGERNPSNTIFVFDAAYSPG--SGLLGVALSDGSLR---LVNGRGYCISVIQLPGSKSHLTSFCWDATGNRLATCVGTGHLITWSLDPESHDKGNYHTAATCTAIFEGGHQSGRPLFGSRF---CGGEDENL----LISWGIDGKLCLWHSKA------SGNIYDPVAILKDDGSYPIFAVEISRSERNLVVGGGSEG--GFIGVPLHFYSI 670          
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S1DA97_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DA97_CYCTE)

HSP 1 Score: 86.7 bits (213), Expect = 1.580e-15
Identity = 88/294 (29.93%), Postives = 129/294 (43.88%), Query Frame = 1
Query:  394 LLTASDNSVHLWDLETCKRETSRALSKV---------------------------------------GDHSVG--GERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQ-PSVLRCRNTATQ-TGLAWSHDGTILASCGGDGAVTLWD----------ARTWTIMSTL-CGHS--RSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGA-SRGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSADGR-----------QLAVAGGGSGKAGLLGVPIKL 1071
            L+T+SD+ +HLW+++    E S  L++V                                       GD  VG  GERNP +L FVFDA   P   S +L  ALSDG+VR   ++ GRG   S+L      +  T  +W   GT LASC   G + LW+          + T   M+ L  GH   R ++GA +    G+E E     LL+SW  D  +C+W + S+G +G    ++      +A    +PIY+  +   G            ++AV GG  G  G LG+P+ L
Sbjct:   14 LMTSSDDFLHLWEIDEPSTEESWELTEVMSIRFTPMETFGYGVTVCRITGKGLDIPGGWSSSRASPGGDGGVGYGGERNPDNLVFVFDASYCPS--SGLLGAALSDGSVR---LMNGRGVCVSILTLPGCQSHMTSFSWDSSGTRLASCVATGHLILWEIDLAGYSYRGSVTPACMAVLEGGHQVGRPLFGAQYC--GGKEEE-----LLVSWGIDGRLCLWDSRSQGNIGAPLNTL------VAKNDDYPIYAIDMFHGGXXXXXXXXXEVSRMAVGGGREG--GFLGIPLYL 287          
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S1SXB2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SXB2_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 5.330e-14
Identity = 81/262 (30.92%), Postives = 126/262 (48.09%), Query Frame = 1
Query:  265 RYQALRVVGCLRHRNQS-KGLDGQVYSCQFVSDQAGGASAGTTRLLTASDNSVHLWDLETCKRETSRALSKVGDHSV--GGERNPSDLS--FVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQPSVLRCRNTATQTGLAWSHDGTILASCGGDGAVTLWDARTWTIMSTLCGHSRSVYGAAFYPGA--GRESEELSTALLLSWSSDETICMWGASRGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSADGRQLAVAGG 1029
            R Q    V  LR   Q+ KG   +VY+C+ +      ASAG  +LLTAS  S+ +WD+E+ +        K  D +   GG   P D +  +VF A  R  A S +LA   SDG +R+ +   G  +P      +++  T +A++  G +LAS  GDG++ + D R W ++    G++  +  A F P    GRE        +++   D  +  WG      GG+ Q ++ P AS A+  G  +     S DG++LA  GG
Sbjct:    1 RLQPTEGVQVLRQPLQAFKGHPEEVYACEVL------ASAGGKQLLTASAESLFVWDIESGRLLNETRHGKQQDMAAIAGGPPLPPDPTRGYVFGA--REAAGSGLLAAPCSDGVLRLWEASSGAAKPLSALKLHSSVGTSVAFNAAGHLLASASGDGSLVVVDLRMWGVVMRYQGNT-PLMSACFLPPCADGREC-------VVASGQDGNL--WGFDLAQ-GGSLQQLT-PYASPALG-GCAMLCVDASRDGQRLACGGG 241          
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S1ZZE4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZE4_TRICV)

HSP 1 Score: 82.4 bits (202), Expect = 9.790e-14
Identity = 88/295 (29.83%), Postives = 119/295 (40.34%), Query Frame = 1
Query:  331 QVYSCQFVSDQAG-------GASAGTTRLLTASDNSVHLW--------------------------------------------DLETCKRETSRALSKVGDHS--------VGGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQ-PSVLR---CRNTATQTGLAWSHDGTILASCGGDGAVTLW-----DARTW------TIMSTLCGHSRSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGASRGPVGGTAQSVSVPLASIAVEQGFPIYSCSV 993
            QVY+  FV D  G       GA  G   LLT+SD+ VHLW                                             ++       R+ S+  D S         GG+RNP +L FVFDA   P   + +L  ALSDGT+R   ++ GRG   S+L+   CR  A  T LAW   GT LAS      V LW     D R W       ++     + R V+GA +  G  ++       LLLSW  D  +C+W A       T Q +  PL+ +  +  FP+Y+  V
Sbjct:   92 QVYALAFVEDWCGPGNPHQAGAGMGEDLLLTSSDDYVHLWRPTMGGGGENVLRDAEGGGAKMRLDRRMALRFGHMHEANWGVSAQVDGASWPKKRSRSRDDDSSGAQQQPRAFGGDRNPDNLVFVFDASFCPS--NGLLGAALSDGTLR---LVNGRGVCVSLLQLPGCR--AHITSLAWDETGTRLASTIATSHVILWTVDGGDGRGWPRSGCAAVLEGGHDYGRPVFGAKYCGGPNQD-------LLLSWGVDGKMCVWDARS-----TGQ-IRSPLSILVSDGSFPLYAVDV 366          
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A6S8YAT0_9STRA (Hypothetical protein n=3 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8YAT0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.280e-12
Identity = 74/222 (33.33%), Postives = 109/222 (49.10%), Query Frame = 1
Query:  493 GGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQ-PSVLR---CRNTATQTGLAWSHDGTILASCGGDGAVTLWDARTWTIMSTL---C------GHS--RSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGA-SRGPVGGTAQSVSVPLASIAVEQGFPIYSCSV-----------SADGRQLA--VAGGGSGKAGLLGVPIKL 1071
            GG+RNP +L FVFDA       +++L VALSDGT+R   ++ GRG   ++L+   C++  T  G  W   G  LASC   G V LWD    +    +   C      GH   R ++GA F+ G   E E+L    L+SW  D  IC+W + S+G +G        P++ +  +  +PIY+  V           SAD + L   +   G  + G +G+PI L
Sbjct:  594 GGDRNPENLVFVFDAVQCEA--NNLLGVALSDGTLR---LVNGRGICVTILQLPGCQSHLTSFG--WDKSGYRLASCVATGHVVLWDIDFGSGKGNVQPCCRAVLEGGHDSGRPLFGATFFGG---EKEDL----LVSWGVDGKICVWDSYSQGQIG-------TPISVLVSKGDYPIYAVDVFENHSRNGSSASADTKPLKSIIGAAGGTEGGFIGLPIYL 794          
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S2URD4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URD4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.650e-12
Identity = 64/216 (29.63%), Postives = 100/216 (46.30%), Query Frame = 1
Query:  493 GGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQ-PSVLRCRNTATQ-TGLAWSHDGTILASCGGDGAVTLWDARTWTIMSTLC------GH--SRSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGASRGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSA-------------DGRQLAVAGGGSGKAGLLGVPIKL 1071
            GG+RNP ++ +VFDA       + ++ VALSDG++R   ++  +G   S+L+     +  T  +W   GT LASC     + LWD    + ++  C      GH   R ++GAA+  G   E       LL++W  D  +C+W +        +  +  P+A +     +PIY+   SA              G +LAV GG  G  G LG+P  L
Sbjct:   42 GGDRNPENIRYVFDASHC--MANQLIGVALSDGSLR---LVNSQGICVSILQLPGVESHLTSFSWDRTGTRLASCVATSHLILWDIDIRSQVNPSCVAVLEGGHVPGRPLFGAAYTGGKSNED------LLVTWGVDGRLCVWNS------WCSGQIHSPIAILVDCSDYPIYAVDTSALDQTQESETSELFTGVRLAVGGGREG--GFLGIPAHL 238          
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S4R6Y1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R6Y1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.140e-9
Identity = 64/206 (31.07%), Postives = 94/206 (45.63%), Query Frame = 1
Query:  181 SADGVVRLWGLGRVER-GEGECDGVTGVERYQALRVVGCLRHRNQSKGLDGQVYSCQFVSDQAGGASAGTTRLLTASDNSVHLWDLETCKRETSRALSKVGDHSV-GGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQ-PSVLRCRNTATQ-TGLAWSHDGTILASCGGDGAVTLW-----DARTWTIMSTL 771
            S+D  + LW L   ++ G+ + +G T   +   L +V  L      KG  G              A +   RL     N     + E C    S  +   GD+ V GG+RNP +L++VFDA     + +D+L VALSDGT+R   ++ GRG   S+L+    ++  T  AW   G  LASC   G + LW     D + W + S L
Sbjct:   40 SSDDFIHLWELLPCQKQGDNKEEGKTATTKEVNLSIVMKLHFTGLEKGYGGVFVHL---------ADSLVDRLRKTKSN-----EAEVC----SNHMIGRGDNFVFGGDRNPDNLTYVFDASHC--SSNDLLGVALSDGTLR---LVNGRGVCVSILQLPGCSSHLTSFAWDKSGMRLASCVATGHLILWSIDLGDGKGWVMPSCL 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FSW0_ECTSI5.430e-15961.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YNR1_9STRA9.180e-3635.46WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S4E2U9_9STRA1.290e-2531.11Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4AKL3_9STRA4.500e-1632.00Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1DA97_CYCTE1.580e-1529.93Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1SXB2_9CHLO5.330e-1430.92Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S1ZZE4_TRICV9.790e-1429.83Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A6S8YAT0_9STRA1.280e-1233.33Hypothetical protein n=3 Tax=Chaetoceros debilis T... [more]
A0A7S2URD4_9STRA4.650e-1229.63Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4R6Y1_9STRA2.140e-931.07Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14526contigH-elongata_contig14526:5028..6134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score461.1
Seed ortholog evalue5e-127
Seed eggNOG ortholog2880.D7FSW0
KEGG koko:K01265,ko:K11797
EggNOG free text desc.transcription initiation from RNA polymerase II promoter
EggNOG OGsCOG2319@1,KOG0263@2759
EC3.4.11.18
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-27_006570.1
Exons1
Model size1107
Cds size1107
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.5644858-CDS-H-elongata_contig14526:5027..61341622929861.5644858-CDS-H-elongata_contig14526:5027..6134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14526 5028..6134 +
1691679186.863163-CDS-H-elongata_contig14526:5027..61341691679186.863163-CDS-H-elongata_contig14526:5027..6134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14526 5028..6134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14526.3097.1prot_H-elongata_contig14526.3097.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14526 5028..6134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14526.3097.1

>prot_H-elongata_contig14526.3097.1 ID=prot_H-elongata_contig14526.3097.1|Name=mRNA_H-elongata_contig14526.3097.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=369bp
FHPSERVAISASEDGTCRVWDLSTSKCVKVLAAHSKEHEVLRACWAPPGS
THDSIAAATGSADGVVRLWGLGRVERGEGECDGVTGVERYQALRVVGCLR
HRNQSKGLDGQVYSCQFVSDQAGGASAGTTRLLTASDNSVHLWDLETCKR
ETSRALSKVGDHSVGGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVR
VGDILRGRGQPSVLRCRNTATQTGLAWSHDGTILASCGGDGAVTLWDART
WTIMSTLCGHSRSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGAS
RGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSADGRQLAVAGGGSGKAGL
LGVPIKLVCLDDEPKGKGG
back to top

mRNA from alignment at H-elongata_contig14526:5028..6134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14526.3097.1 ID=mRNA_H-elongata_contig14526.3097.1|Name=mRNA_H-elongata_contig14526.3097.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1107bp|location=Sequence derived from alignment at H-elongata_contig14526:5028..6134+ (Himanthalia elongata Himel1 dioecious)
TTCCACCCCTCGGAACGAGTAGCCATCTCTGCCAGCGAGGACGGCACTTG CAGAGTGTGGGACCTCAGTACCAGTAAGTGCGTTAAGGTACTCGCCGCGC ATAGTAAGGAGCACGAGGTCTTGAGAGCGTGCTGGGCCCCGCCAGGCAGC ACTCACGATTCTATCGCCGCGGCGACTGGTTCCGCGGACGGAGTGGTGCG CTTGTGGGGCTTGGGAAGAGTAGAAAGAGGCGAGGGAGAATGCGACGGCG TGACTGGAGTTGAACGGTATCAGGCCCTCAGAGTCGTCGGGTGCTTGCGC CACCGCAACCAGTCAAAAGGTCTCGACGGCCAGGTGTACTCCTGCCAGTT CGTCTCGGACCAAGCCGGTGGAGCGTCAGCGGGCACAACGCGCCTCCTCA CAGCAAGCGATAACAGCGTGCATCTGTGGGATTTGGAGACCTGCAAGCGA GAGACATCTCGCGCGCTGTCCAAGGTAGGGGACCACTCCGTCGGCGGCGA GCGGAATCCGAGCGATCTGTCATTCGTATTCGACGCTAAGCCCCGCCCAG GAGCGAGGAGCGACGTGCTGGCTGTCGCCCTCAGCGACGGCACCGTCCGA GTCGGGGACATCCTGCGCGGTAGAGGTCAACCCTCTGTGCTCAGGTGTCG CAACACCGCCACGCAGACGGGCCTCGCTTGGTCGCACGACGGTACAATCC TTGCCTCTTGCGGCGGAGATGGGGCGGTAACCCTGTGGGACGCGAGGACG TGGACGATCATGTCGACGCTCTGCGGCCACTCGCGGTCCGTATACGGGGC AGCGTTCTATCCCGGCGCGGGGCGGGAGTCAGAAGAGTTATCAACGGCGC TTTTGCTGTCGTGGTCAAGCGATGAGACCATCTGTATGTGGGGCGCCTCT CGAGGGCCCGTTGGCGGGACGGCGCAATCGGTATCGGTACCCTTGGCGAG TATAGCGGTCGAGCAAGGGTTTCCGATCTACAGCTGCTCTGTCTCCGCGG ACGGACGGCAGCTGGCCGTGGCAGGAGGAGGATCTGGCAAGGCTGGGTTG TTGGGTGTACCCATCAAGTTGGTGTGTCTCGACGACGAACCCAAGGGCAA GGGCGGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14526:5028..6134+

>mRNA_H-elongata_contig14526.3097.1 ID=mRNA_H-elongata_contig14526.3097.1|Name=mRNA_H-elongata_contig14526.3097.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2214bp|location=Sequence derived from alignment at H-elongata_contig14526:5028..6134+ (Himanthalia elongata Himel1 dioecious)
TTCCACCCCTCGGAACGAGTAGCCATCTCTGCCAGCGAGGACGGCACTTG
CAGAGTGTGGGACCTCAGTACCAGTAAGTGCGTTAAGGTACTCGCCGCGC
ATAGTAAGGAGCACGAGGTCTTGAGAGCGTGCTGGGCCCCGCCAGGCAGC
ACTCACGATTCTATCGCCGCGGCGACTGGTTCCGCGGACGGAGTGGTGCG
CTTGTGGGGCTTGGGAAGAGTAGAAAGAGGCGAGGGAGAATGCGACGGCG
TGACTGGAGTTGAACGGTATCAGGCCCTCAGAGTCGTCGGGTGCTTGCGC
CACCGCAACCAGTCAAAAGGTCTCGACGGCCAGGTGTACTCCTGCCAGTT
CGTCTCGGACCAAGCCGGTGGAGCGTCAGCGGGCACAACGCGCCTCCTCA
CAGCAAGCGATAACAGCGTGCATCTGTGGGATTTGGAGACCTGCAAGCGA
GAGACATCTCGCGCGCTGTCCAAGGTAGGGGACCACTCCGTCGGCGGCGA
GCGGAATCCGAGCGATCTGTCATTCGTATTCGACGCTAAGCCCCGCCCAG
GAGCGAGGAGCGACGTGCTGGCTGTCGCCCTCAGCGACGGCACCGTCCGA
GTCGGGGACATCCTGCGCGGTAGAGGTCAACCCTCTGTGCTCAGGTGTCG
CAACACCGCCACGCAGACGGGCCTCGCTTGGTCGCACGACGGTACAATCC
TTGCCTCTTGCGGCGGAGATGGGGCGGTAACCCTGTGGGACGCGAGGACG
TGGACGATCATGTCGACGCTCTGCGGCCACTCGCGGTCCGTATACGGGGC
AGCGTTCTATCCCGGCGCGGGGCGGGAGTCAGAAGAGTTATCAACGGCGC
TTTTGCTGTCGTGGTCAAGCGATGAGACCATCTGTATGTGGGGCGCCTCT
CGAGGGCCCGTTGGCGGGACGGCGCAATCGGTATCGGTACCCTTGGCGAG
TATAGCGGTCGAGCAAGGGTTTCCGATCTACAGCTGCTCTGTCTCCGCGG
ACGGACGGCAGCTGGCCGTGGCAGGAGGAGGATCTGGCAAGGCTGGGTTG
TTGGGTGTACCCATCAAGTTGGTGTGTCTCGACGACGAACCCAAGGGCAA
GGGCGGCTTCCACCCCTCGGAACGAGTAGCCATCTCTGCCAGCGAGGACG
GCACTTGCAGAGTGTGGGACCTCAGTACCAGTAAGTGCGTTAAGGTACTC
GCCGCGCATAGTAAGGAGCACGAGGTCTTGAGAGCGTGCTGGGCCCCGCC
AGGCAGCACTCACGATTCTATCGCCGCGGCGACTGGTTCCGCGGACGGAG
TGGTGCGCTTGTGGGGCTTGGGAAGAGTAGAAAGAGGCGAGGGAGAATGC
GACGGCGTGACTGGAGTTGAACGGTATCAGGCCCTCAGAGTCGTCGGGTG
CTTGCGCCACCGCAACCAGTCAAAAGGTCTCGACGGCCAGGTGTACTCCT
GCCAGTTCGTCTCGGACCAAGCCGGTGGAGCGTCAGCGGGCACAACGCGC
CTCCTCACAGCAAGCGATAACAGCGTGCATCTGTGGGATTTGGAGACCTG
CAAGCGAGAGACATCTCGCGCGCTGTCCAAGGTAGGGGACCACTCCGTCG
GCGGCGAGCGGAATCCGAGCGATCTGTCATTCGTATTCGACGCTAAGCCC
CGCCCAGGAGCGAGGAGCGACGTGCTGGCTGTCGCCCTCAGCGACGGCAC
CGTCCGAGTCGGGGACATCCTGCGCGGTAGAGGTCAACCCTCTGTGCTCA
GGTGTCGCAACACCGCCACGCAGACGGGCCTCGCTTGGTCGCACGACGGT
ACAATCCTTGCCTCTTGCGGCGGAGATGGGGCGGTAACCCTGTGGGACGC
GAGGACGTGGACGATCATGTCGACGCTCTGCGGCCACTCGCGGTCCGTAT
ACGGGGCAGCGTTCTATCCCGGCGCGGGGCGGGAGTCAGAAGAGTTATCA
ACGGCGCTTTTGCTGTCGTGGTCAAGCGATGAGACCATCTGTATGTGGGG
CGCCTCTCGAGGGCCCGTTGGCGGGACGGCGCAATCGGTATCGGTACCCT
TGGCGAGTATAGCGGTCGAGCAAGGGTTTCCGATCTACAGCTGCTCTGTC
TCCGCGGACGGACGGCAGCTGGCCGTGGCAGGAGGAGGATCTGGCAAGGC
TGGGTTGTTGGGTGTACCCATCAAGTTGGTGTGTCTCGACGACGAACCCA
AGGGCAAGGGCGGC
back to top