mRNA_H-elongata_contig14526.3097.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: D7FSW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSW0_ECTSI) HSP 1 Score: 462 bits (1188), Expect = 5.430e-159 Identity = 239/388 (61.60%), Postives = 284/388 (73.20%), Query Frame = 1
Query: 1 FHPSERVAISASEDGTCRVWDLSTSKCVKVLAAHSKEHEVLRACWAPPGSTHDSIAAATGSADGVVRLWGLGRVERGEGECDGVTGVERYQALRVVGCLRHRNQSKGLDGQVYSCQFVSDQAGGA---SAGTTRLLTASDNSVHLWDLETCKRETSRALSKVGDHSVGGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQPSVLRCRNTATQTGLAWSHDGTILASCGGDGAVTLWDARTWTIMSTLCGHSRSVYGAAFYPGAGR--------------ESEELSTALLLSWSSDETICMWGASRGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSADGRQLAVAGGGSGK--AGLLGVPIKLVCLDDEPKGKGG 1107
FHP+E AISASEDGT RVWDLS+ KC K L H+K+HEVLRACWAPPG+ +DS++ ATGSADG+VRLWG+ G+G D +GV+RYQ+L+VVG LRHRN++KGLDGQVYSC F+ D +GGA SA LLTASD+SVHLWD+ET KR +SRALSKVG HS+GGERNP DL+FVFDAKPRPG+ S VLAVALSDGTVRVGD+L+ + +VLR T LAWS DGT+LASCGG+G +T+WD RTWT S L GHSR VYGAAFY AG ++ LLLSWSSDET+C W R TA PLA+++VE+GFP+YSCSVSADGR+ A+AGGG + AG LGVPIKLV L DE + K G
Sbjct: 39 FHPTEDAAISASEDGTARVWDLSSGKCAKSLEGHNKKHEVLRACWAPPGAANDSVSVATGSADGIVRLWGI---RHGDGR-DEKSGVDRYQSLKVVGQLRHRNEAKGLDGQVYSCHFIPDPSGGAPPSSAAAMCLLTASDSSVHLWDVETRKRVSSRALSKVGAHSIGGERNPDDLAFVFDAKPRPGSGSSVLAVALSDGTVRVGDVLQQGEKAAVLRGVTDTHLTSLAWSDDGTVLASCGGNGTITVWDTRTWTARSVLWGHSRPVYGAAFYSCAGNGXXXXXXXXXXXXXXGQDCPPQLLLSWSSDETVCAWDTGRATGDATA-----PLATLSVEEGFPVYSCSVSADGRRFALAGGGGDEKSAGFLGVPIKLVDLSDEARAKDG 417
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A835YNR1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR1_9STRA) HSP 1 Score: 146 bits (369), Expect = 9.180e-36 Identity = 111/313 (35.46%), Postives = 145/313 (46.33%), Query Frame = 1
Query: 1 FHPSERV-AISASEDGTCRVWDLSTSKCVKVLAAHSKEHEVLRACWAPPGSTHDSIAAATGSADGVVRLWGLGRVE----RGEGECDGVTGVERYQALRVVGCLRHRNQSKGLDGQVYSCQFVSDQAGGASAGTT-----------------------------RLLTASDNSVHLWDLETCKRETSRALSKVGDHSVGGE-RNPSDLSFVFDAKP-----RPGARSDVLAVALSDGTVRVGDILRGRGQPSVLRCRNTATQ----------------TGLAWSHDGTILASCGGDGAVTLWDARTWTIMSTL 771
FHP+ A S SEDGT RVWD+ V + +A + EVLR CWAPPG+ I A+GSADG+VRLW + RG DG + ALR V L + + G DGQVY+ QF+ GG+S+G L+ A+D++V LWD+ T A S H+ GG RNP + FVFDAK G LA ALSDGTVRV + ++ C + + T +AW+ DG+ LA+CG V +WDARTWT + L
Sbjct: 49 FHPTVHSRAASCSEDGTVRVWDVQRG--VSIASAKGSKDEVLRICWAPPGTP--GIDLASGSADGLVRLWAMSAATSTATRGAPGRDGSSAA----ALRCVKTLDVKAAAGG-DGQVYALQFIGADGGGSSSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLMVAADDAVSLWDVGTGVVTRRWAFSSSAQHAHGGAARNPDNQVFVFDAKVCCGSGGSGGGDGTLAAALSDGTVRVQPLDSELPASTLHPCGSGSNSGXXXXXXXXXXXXAHLTAVAWAPDGSALAACGXXXGVEVWDARTWTRRAAL 352
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S4E2U9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2U9_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.290e-25 Identity = 112/360 (31.11%), Postives = 155/360 (43.06%), Query Frame = 1
Query: 19 VAISASEDGTCRVWDLSTSKCVKVLAAHSKEHEVLRACWAPPGSTHDSIAA---ATGSADGVVRLWGLGRVERGEGECDGVTGVERYQALRVVGCLRHRNQSKGLDGQVYSCQFVSDQAGGASAGTTRLLTASDNSVHLWDLETCKRETSRALSKVGDHSVGGERNPSDLSFVFDAKPRPGARSDVL----AVALSDGTVRVGDILRGRGQPSVLRCRNTATQTGLAWSHDGTILASCGGDGAVTLWDARTWTIMSTLCG-HSRSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGASRGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSADGRQLAVAGGGSGKAGLLGVPIKLV 1074
+ ++ASEDGT +VW L+ + +A + EVLR WAPP D+ A A ADG LW RG+ + A + + L H G D QVY C + A G + G LLTA+ +V WD+ K + S R D ++VFD +P P D L A A+SDGT RV D+ R VLR + T + W GT +ASC GDG +WDARTW ++ L G H+ YGAA G + SW++ E + W A + + A P++ C+ S+ + V GG GK + VP V
Sbjct: 33 LCVTASEDGTAKVWRLADGRLEGEVAQSQTKDEVLRVAWAPP-IVRDAAGASLLAVAGADGFCNLW------RGDD----------WSAPKSLQRLDH-----GGD-QVYGCAW---SACGDAYGAW-LLTAAGAAVRTWDVNAGK--------SIKQWSYQEPRG--DQAYVFDVQPAPRDADDALRATIACAVSDGTARVRDV-RLDYDARVLRAPGDSKVTAVGWLG-GTAVASCYGDGCCRVWDARTWKLLGRLKGAHASPCYGAAKTDG-----------FVASWAA-EGLAFWSCEDALRKADATKKATAPITDAAGNAVPLFQCAFSSS--NIVVCGGAGGKGDAI-VPSVFV 338
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S4AKL3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKL3_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 4.500e-16 Identity = 72/225 (32.00%), Postives = 109/225 (48.44%), Query Frame = 1
Query: 454 TSRALSKVGDHSVGGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQP-SVLRCRNTATQ-TGLAWSHDGTILASCGGDGAVTLW-------DARTWTIMSTLC-----GHS--RSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGASRGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSADGRQLAVAGGGSGKAGLLGVPIKLVCL 1080
T + +K G + GGERNPS+ FVFDA PG S +L VALSDG++R ++ GRG SV++ + + T W G LA+C G G + W D + +T GH R ++G+ F G E E L L+SW D +C+W + + ++ P+A + + +PI++ +S R L V GG G G +GVP+ +
Sbjct: 466 TKSSEAKDGSVAFGGERNPSNTIFVFDAAYSPG--SGLLGVALSDGSLR---LVNGRGYCISVIQLPGSKSHLTSFCWDATGNRLATCVGTGHLITWSLDPESHDKGNYHTAATCTAIFEGGHQSGRPLFGSRF---CGGEDENL----LISWGIDGKLCLWHSKA------SGNIYDPVAILKDDGSYPIFAVEISRSERNLVVGGGSEG--GFIGVPLHFYSI 670
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S1DA97_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DA97_CYCTE) HSP 1 Score: 86.7 bits (213), Expect = 1.580e-15 Identity = 88/294 (29.93%), Postives = 129/294 (43.88%), Query Frame = 1
Query: 394 LLTASDNSVHLWDLETCKRETSRALSKV---------------------------------------GDHSVG--GERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQ-PSVLRCRNTATQ-TGLAWSHDGTILASCGGDGAVTLWD----------ARTWTIMSTL-CGHS--RSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGA-SRGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSADGR-----------QLAVAGGGSGKAGLLGVPIKL 1071
L+T+SD+ +HLW+++ E S L++V GD VG GERNP +L FVFDA P S +L ALSDG+VR ++ GRG S+L + T +W GT LASC G + LW+ + T M+ L GH R ++GA + G+E E LL+SW D +C+W + S+G +G ++ +A +PIY+ + G ++AV GG G G LG+P+ L
Sbjct: 14 LMTSSDDFLHLWEIDEPSTEESWELTEVMSIRFTPMETFGYGVTVCRITGKGLDIPGGWSSSRASPGGDGGVGYGGERNPDNLVFVFDASYCPS--SGLLGAALSDGSVR---LMNGRGVCVSILTLPGCQSHMTSFSWDSSGTRLASCVATGHLILWEIDLAGYSYRGSVTPACMAVLEGGHQVGRPLFGAQYC--GGKEEE-----LLVSWGIDGRLCLWDSRSQGNIGAPLNTL------VAKNDDYPIYAIDMFHGGXXXXXXXXXEVSRMAVGGGREG--GFLGIPLYL 287
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S1SXB2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SXB2_9CHLO) HSP 1 Score: 81.3 bits (199), Expect = 5.330e-14 Identity = 81/262 (30.92%), Postives = 126/262 (48.09%), Query Frame = 1
Query: 265 RYQALRVVGCLRHRNQS-KGLDGQVYSCQFVSDQAGGASAGTTRLLTASDNSVHLWDLETCKRETSRALSKVGDHSV--GGERNPSDLS--FVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQPSVLRCRNTATQTGLAWSHDGTILASCGGDGAVTLWDARTWTIMSTLCGHSRSVYGAAFYPGA--GRESEELSTALLLSWSSDETICMWGASRGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSADGRQLAVAGG 1029
R Q V LR Q+ KG +VY+C+ + ASAG +LLTAS S+ +WD+E+ + K D + GG P D + +VF A R A S +LA SDG +R+ + G +P +++ T +A++ G +LAS GDG++ + D R W ++ G++ + A F P GRE +++ D + WG GG+ Q ++ P AS A+ G + S DG++LA GG
Sbjct: 1 RLQPTEGVQVLRQPLQAFKGHPEEVYACEVL------ASAGGKQLLTASAESLFVWDIESGRLLNETRHGKQQDMAAIAGGPPLPPDPTRGYVFGA--REAAGSGLLAAPCSDGVLRLWEASSGAAKPLSALKLHSSVGTSVAFNAAGHLLASASGDGSLVVVDLRMWGVVMRYQGNT-PLMSACFLPPCADGREC-------VVASGQDGNL--WGFDLAQ-GGSLQQLT-PYASPALG-GCAMLCVDASRDGQRLACGGG 241
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S1ZZE4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZE4_TRICV) HSP 1 Score: 82.4 bits (202), Expect = 9.790e-14 Identity = 88/295 (29.83%), Postives = 119/295 (40.34%), Query Frame = 1
Query: 331 QVYSCQFVSDQAG-------GASAGTTRLLTASDNSVHLW--------------------------------------------DLETCKRETSRALSKVGDHS--------VGGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQ-PSVLR---CRNTATQTGLAWSHDGTILASCGGDGAVTLW-----DARTW------TIMSTLCGHSRSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGASRGPVGGTAQSVSVPLASIAVEQGFPIYSCSV 993
QVY+ FV D G GA G LLT+SD+ VHLW ++ R+ S+ D S GG+RNP +L FVFDA P + +L ALSDGT+R ++ GRG S+L+ CR A T LAW GT LAS V LW D R W ++ + R V+GA + G ++ LLLSW D +C+W A T Q + PL+ + + FP+Y+ V
Sbjct: 92 QVYALAFVEDWCGPGNPHQAGAGMGEDLLLTSSDDYVHLWRPTMGGGGENVLRDAEGGGAKMRLDRRMALRFGHMHEANWGVSAQVDGASWPKKRSRSRDDDSSGAQQQPRAFGGDRNPDNLVFVFDASFCPS--NGLLGAALSDGTLR---LVNGRGVCVSLLQLPGCR--AHITSLAWDETGTRLASTIATSHVILWTVDGGDGRGWPRSGCAAVLEGGHDYGRPVFGAKYCGGPNQD-------LLLSWGVDGKMCVWDARS-----TGQ-IRSPLSILVSDGSFPLYAVDV 366
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A6S8YAT0_9STRA (Hypothetical protein n=3 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8YAT0_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.280e-12 Identity = 74/222 (33.33%), Postives = 109/222 (49.10%), Query Frame = 1
Query: 493 GGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQ-PSVLR---CRNTATQTGLAWSHDGTILASCGGDGAVTLWDARTWTIMSTL---C------GHS--RSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGA-SRGPVGGTAQSVSVPLASIAVEQGFPIYSCSV-----------SADGRQLA--VAGGGSGKAGLLGVPIKL 1071
GG+RNP +L FVFDA +++L VALSDGT+R ++ GRG ++L+ C++ T G W G LASC G V LWD + + C GH R ++GA F+ G E E+L L+SW D IC+W + S+G +G P++ + + +PIY+ V SAD + L + G + G +G+PI L
Sbjct: 594 GGDRNPENLVFVFDAVQCEA--NNLLGVALSDGTLR---LVNGRGICVTILQLPGCQSHLTSFG--WDKSGYRLASCVATGHVVLWDIDFGSGKGNVQPCCRAVLEGGHDSGRPLFGATFFGG---EKEDL----LVSWGVDGKICVWDSYSQGQIG-------TPISVLVSKGDYPIYAVDVFENHSRNGSSASADTKPLKSIIGAAGGTEGGFIGLPIYL 794
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S2URD4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URD4_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 4.650e-12 Identity = 64/216 (29.63%), Postives = 100/216 (46.30%), Query Frame = 1
Query: 493 GGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQ-PSVLRCRNTATQ-TGLAWSHDGTILASCGGDGAVTLWDARTWTIMSTLC------GH--SRSVYGAAFYPGAGRESEELSTALLLSWSSDETICMWGASRGPVGGTAQSVSVPLASIAVEQGFPIYSCSVSA-------------DGRQLAVAGGGSGKAGLLGVPIKL 1071
GG+RNP ++ +VFDA + ++ VALSDG++R ++ +G S+L+ + T +W GT LASC + LWD + ++ C GH R ++GAA+ G E LL++W D +C+W + + + P+A + +PIY+ SA G +LAV GG G G LG+P L
Sbjct: 42 GGDRNPENIRYVFDASHC--MANQLIGVALSDGSLR---LVNSQGICVSILQLPGVESHLTSFSWDRTGTRLASCVATSHLILWDIDIRSQVNPSCVAVLEGGHVPGRPLFGAAYTGGKSNED------LLVTWGVDGRLCVWNS------WCSGQIHSPIAILVDCSDYPIYAVDTSALDQTQESETSELFTGVRLAVGGGREG--GFLGIPAHL 238
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Match: A0A7S4R6Y1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R6Y1_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 2.140e-9 Identity = 64/206 (31.07%), Postives = 94/206 (45.63%), Query Frame = 1
Query: 181 SADGVVRLWGLGRVER-GEGECDGVTGVERYQALRVVGCLRHRNQSKGLDGQVYSCQFVSDQAGGASAGTTRLLTASDNSVHLWDLETCKRETSRALSKVGDHSV-GGERNPSDLSFVFDAKPRPGARSDVLAVALSDGTVRVGDILRGRGQ-PSVLRCRNTATQ-TGLAWSHDGTILASCGGDGAVTLW-----DARTWTIMSTL 771
S+D + LW L ++ G+ + +G T + L +V L KG G A + RL N + E C S + GD+ V GG+RNP +L++VFDA + +D+L VALSDGT+R ++ GRG S+L+ ++ T AW G LASC G + LW D + W + S L
Sbjct: 40 SSDDFIHLWELLPCQKQGDNKEEGKTATTKEVNLSIVMKLHFTGLEKGYGGVFVHL---------ADSLVDRLRKTKSN-----EAEVC----SNHMIGRGDNFVFGGDRNPDNLTYVFDASHC--SSNDLLGVALSDGTLR---LVNGRGVCVSILQLPGCSSHLTSFAWDKSGMRLASCVATGHLILWSIDLGDGKGWVMPSCL 222 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14526.3097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14526.3097.1 >prot_H-elongata_contig14526.3097.1 ID=prot_H-elongata_contig14526.3097.1|Name=mRNA_H-elongata_contig14526.3097.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=369bp FHPSERVAISASEDGTCRVWDLSTSKCVKVLAAHSKEHEVLRACWAPPGSback to top mRNA from alignment at H-elongata_contig14526:5028..6134+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14526.3097.1 ID=mRNA_H-elongata_contig14526.3097.1|Name=mRNA_H-elongata_contig14526.3097.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1107bp|location=Sequence derived from alignment at H-elongata_contig14526:5028..6134+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14526:5028..6134+ >mRNA_H-elongata_contig14526.3097.1 ID=mRNA_H-elongata_contig14526.3097.1|Name=mRNA_H-elongata_contig14526.3097.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2214bp|location=Sequence derived from alignment at H-elongata_contig14526:5028..6134+ (Himanthalia elongata Himel1 dioecious)back to top |