prot_H-elongata_contig14511.3089.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig14511.3089.1
Unique Name	prot_H-elongata_contig14511.3089.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	212

Homology

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BLAST of mRNA_H-elongata_contig14511.3089.1 vs. uniprot
Match: D7FIZ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ7_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 1.180e-83
Identity = 134/210 (63.81%), Postives = 156/210 (74.29%), Query Frame = 0

Query:    1 QWKNAIVEFFEIENEDYVQVDDEVTRCTVDDWQRRISIYNEEDGDSTAADVASSQVDLIYPNSPTAKTTEFFETISSSINEQDEELSTPEASDFDLFSLGFLVIWLDSDGEVVSSQGTSEDKDVVTIGGTDVWWPWWAWLIYAAVVLCCICPVLFFFFKWRRDKEVESETLSQSQGKDFGTPAPPSATSTNPYGXXXXXXXXXEEYKNGK 210
            Q K A++E F IE+ D V VDD +TRCTVD+WQRR+SIYN  D   +AAD+AS+QVD IYP    A TT F + I++SIN QD EL     +D DL SLGFLVIWLDS+G+VV +QGT+  KDVV IGGTDVWWPWWAWLIYAAVVLCCICP+LFFFFKWRRDKE E ++     GKD G PAPPSATS+NPYG         EE K+GK
Sbjct:   81 QLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPG---ALTTAFLDDIATSINAQDAELVFT-GTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGSGKDMGAPAPPSATSSNPYGGNYSA----EENKSGK 282

[Close]

BLAST of mRNA_H-elongata_contig14511.3089.1 vs. uniprot
Match: A0A6H5JL50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL50_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.360e-9
Identity = 49/163 (30.06%), Postives = 83/163 (50.92%), Query Frame = 0

Query:    5 AIVEFFEIENEDYVQVDDEVTRCTVDDW------QRRISIYNEEDGDSTAADVASSQVDLIYPNSPTAKTTEFFETISSSINEQDEELSTPEASDFDLFSLGFLVIWLDSDGEVVSSQGTSEDKDVVTIGGTDVWWPWWAWLIYAAVVLCCICPVLFFFFKWR 161
             I++ FE+E E        V +  V ++      +  I+I NE     +AA +++ Q++L+       +++EF   ++SS+  +D  LS   A      SLG++V++ D D  V ++   S D D V   G D WWPW   L++  V+LCCICP+    + +R
Sbjct:  233 GIMDVFEVEQEQTEGTTGTVEKREVTEFCDDGSEEWTIAIGNEPSDTQSAAVISAGQMELV-------RSSEFTTLLASSL--EDSNLSVNPAG-LTYSSLGYIVLY-DEDQAVTTANSDSLDSDFVAFRGPDQWWPWXXXLLFGLVLLCCICPLAACIYYYR 384

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig14511.3089.1 vs. uniprot

BLAST of mRNA_H-elongata_contig14511.3089.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FIZ7_ECTSI	1.180e-83	63.81	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5JL50_9PHAE	1.360e-9	30.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..135
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 136..158
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 159..211
None	No IPR available	TMHMM	TMhelix		coord: 136..158

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig14511	contig	H-elongata_contig14511:2205..5078 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig14511.3089.1	mRNA_H-elongata_contig14511.3089.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig14511 395..5078 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig14511.3089.1 ID=prot_H-elongata_contig14511.3089.1|Name=mRNA_H-elongata_contig14511.3089.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
QWKNAIVEFFEIENEDYVQVDDEVTRCTVDDWQRRISIYNEEDGDSTAAD
VASSQVDLIYPNSPTAKTTEFFETISSSINEQDEELSTPEASDFDLFSLG
FLVIWLDSDGEVVSSQGTSEDKDVVTIGGTDVWWPWWAWLIYAAVVLCCI
CPVLFFFFKWRRDKEVESETLSQSQGKDFGTPAPPSATSTNPYGGGGAGG
GGGEEYKNGKA*