mRNA_H-elongata_contig14511.3089.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14511.3089.1
Unique NamemRNA_H-elongata_contig14511.3089.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14511.3089.1 vs. uniprot
Match: D7FIZ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ7_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 2.000e-76
Identity = 134/210 (63.81%), Postives = 156/210 (74.29%), Query Frame = 1 
Query:    1 QWKNAIVEFFEIENEDYVQVDDEVTRCTVDDWQRRISIYNEEDGDSTAADVASSQVDLIYPNSPTAKTTEFFETISSSINEQDEELSTPEASDFDLFSLGFLVIWLDSDGEVVSSQGTSEDKDVVTIGGTDVWWPWWAWLIYAAVVLCCICPVLFFFFKWRRDKEVESETLSQSQGKDFGTPAPPSATSTNPYGXXXXXXXXXEEYKNGK 630
            Q K A++E F IE+ D V VDD +TRCTVD+WQRR+SIYN  D   +AAD+AS+QVD IYP    A TT F + I++SIN QD EL     +D DL SLGFLVIWLDS+G+VV +QGT+  KDVV IGGTDVWWPWWAWLIYAAVVLCCICP+LFFFFKWRRDKE E ++     GKD G PAPPSATS+NPYG         EE K+GK
Sbjct:   81 QLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPG---ALTTAFLDDIATSINAQDAELVFT-GTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGSGKDMGAPAPPSATSSNPYGGNYSA----EENKSGK 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14511.3089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIZ7_ECTSI2.000e-7663.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14511contigH-elongata_contig14511:395..5078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2446
Cds size636
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14511.3089.1prot_H-elongata_contig14511.3089.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14511 2205..5078 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929860.914031-UTR-H-elongata_contig14511:394..22041622929860.914031-UTR-H-elongata_contig14511:394..2204Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14511 395..2204 -
1691679186.610399-UTR-H-elongata_contig14511:394..22041691679186.610399-UTR-H-elongata_contig14511:394..2204Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14511 395..2204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929860.9307446-CDS-H-elongata_contig14511:2204..23141622929860.9307446-CDS-H-elongata_contig14511:2204..2314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14511 2205..2314 -
1691679186.625421-CDS-H-elongata_contig14511:2204..23141691679186.625421-CDS-H-elongata_contig14511:2204..2314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14511 2205..2314 -
1622929860.9487476-CDS-H-elongata_contig14511:2747..28661622929860.9487476-CDS-H-elongata_contig14511:2747..2866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14511 2748..2866 -
1691679186.6345685-CDS-H-elongata_contig14511:2747..28661691679186.6345685-CDS-H-elongata_contig14511:2747..2866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14511 2748..2866 -
1622929860.967033-CDS-H-elongata_contig14511:3690..38421622929860.967033-CDS-H-elongata_contig14511:3690..3842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14511 3691..3842 -
1691679186.6431618-CDS-H-elongata_contig14511:3690..38421691679186.6431618-CDS-H-elongata_contig14511:3690..3842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14511 3691..3842 -
1622929860.9824326-CDS-H-elongata_contig14511:4235..43251622929860.9824326-CDS-H-elongata_contig14511:4235..4325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14511 4236..4325 -
1691679186.652242-CDS-H-elongata_contig14511:4235..43251691679186.652242-CDS-H-elongata_contig14511:4235..4325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14511 4236..4325 -
1622929861.0032191-CDS-H-elongata_contig14511:4913..50781622929861.0032191-CDS-H-elongata_contig14511:4913..5078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14511 4914..5078 -
1691679186.6625068-CDS-H-elongata_contig14511:4913..50781691679186.6625068-CDS-H-elongata_contig14511:4913..5078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14511 4914..5078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14511.3089.1

>prot_H-elongata_contig14511.3089.1 ID=prot_H-elongata_contig14511.3089.1|Name=mRNA_H-elongata_contig14511.3089.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
QWKNAIVEFFEIENEDYVQVDDEVTRCTVDDWQRRISIYNEEDGDSTAAD
VASSQVDLIYPNSPTAKTTEFFETISSSINEQDEELSTPEASDFDLFSLG
FLVIWLDSDGEVVSSQGTSEDKDVVTIGGTDVWWPWWAWLIYAAVVLCCI
CPVLFFFFKWRRDKEVESETLSQSQGKDFGTPAPPSATSTNPYGGGGAGG
GGGEEYKNGKA*
back to top

mRNA from alignment at H-elongata_contig14511:395..5078-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14511.3089.1 ID=mRNA_H-elongata_contig14511.3089.1|Name=mRNA_H-elongata_contig14511.3089.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4684bp|location=Sequence derived from alignment at H-elongata_contig14511:395..5078- (Himanthalia elongata Himel1 dioecious)
CAGTGGAAGAACGCGATCGTGGAGTTCTTCGAAATCGAGAACGAAGACTA
TGTGCAGGTCGATGATGAAGTGACCAGGTGCACTGTTGACGATTGGCAGC
GAAGAATCTCCATCTACAACGAGGAGGACGGCGACAGCACCGCGGCCGAT
GTTGCCTCGAGCCAGGTGCAGGCAGCACTCAAACAGTACCGGTGCTATTA
ATTAATAGGGCGCTATTATACACTATCATACACTTGAATAGATGAGTGGC
CACGGCGGACGTTTATTTCCGGGGTTCGTTTAATGTGCCCTGTCCAAGAC
TTGGTACTGAAGGGGGCTATTACATTACCGCACGTTTTTTGGGACTATGA
TGTGTATCATGTATAATGTATGATTTCACCCTACTGGTACCAAGGTGACA
CAATCAATCGCGATTATGTGGCGCGTTAGACCTTGGACACCTACTACCGG
TATATGTTACTATGTTTCTGTTACCATGGTACGGTATTGATTGTATTATA
TTGTATTATCGCTATATACTATTAATAGTTGTTGAAGACCATGGTACCTT
TAGTACCTTTAGTACCTTTTTCAGAGGTCAGGCCAAGCTAAGCAGTTAAG
TCGACCTGTTCCTTCTAGTCTATGGTATATATGGTATACTGTTCAAAATA
TAGCTCTGTCCCCTCACTCATGTCTTTTACTTGACGCCTTGTTATTGCCC
TCCCCCTGTAACCCTCTGCCCCTCTCCCCTCCCCTCCCCTCCGTTTCCCG
TAGGTGGACTTGATCTACCCCAACTCGCCCACAGCCAAGACGACCGAATT
CTTCGAAACCATTTCTAGTTCCATCAACGAACAGGACGAGGAGGTAATAT
ACAATTATACTAAACCGTACTCTGTACTCTGGCGATTGAAATATCTATGC
CTACGCGCTCATAGTCTTGAGATGCTGATGCTGATTTATGATTGCCTTAT
GATGCTGCTACTGTACCGCCACAGAGGTGCGTCGCGCTCGGTACGCCTTT
ATTTTCTCACCGTTACGTGTGGATACTAGATAGTAGTAACATTACTATAT
ACTATATAAATAGTAGATACTACATACTTAGTAGATAGTAGTAACAAAGG
TAATAATAACTAATATTGGAGGGAGCAACAGTCCTTTTTCCCTCTGCGGG
TGTGCCGCTTTAGTTAAAATGCATTGTTTGACGTATGTAGTTATGCATTG
TTGTTGCTCTTACTTCTTTTTTCCGCATATTCACAGCTTTCCACTCCGGA
GGCAAGTGACTTTGACCTTTTTAGTCTGGGTTTCCTGGTGATATGGCTTG
ACTCGGACGGGGAAGTGGTGAGCTCTCAGGGGACAAGTGAAGATAAAGAC
GTGGTGACCATCGGAGGCACCGACGTGTGGTGGCCATGGTGAGGACGATA
GTAAGGACCTGACGATAGTGGGTCTCTTGGACTACATTACATTAACCCAC
CTCTCATGGTACCAAGAAGTATATAGGATATAGCGTGGATGTTCGGAGGG
TTCGAATGAGTTCAAGTTTTTTAAAAATAAGAACAATTTAGAACGACGGC
GCGAACTTCCTGAGATATACTGTACATATAAAATATATTGAACATTTATT
GTTGCCGTATTTCGACAGTCATGCCAACAGTCCTCTCGATGATTTGATGC
CATATATACTATCGCCGTGATAACCGTCGTTAGTCGTTAGGATGTCGTTT
CAGTTGATATCCAGACCCAGACCCGATGCAACCTGGTGATGAACGGAATA
AATAAATACAAAATCAACGATTAAAAATCCATATACATACCGTATACTCC
TATGGTAATGTTAATACTATTACTAGATGGGTTGTTTAACGGCAAGCGCG
AATGAAACTATTATAACTCCCACTAGCTAGCTTTACGCTGCGTGAGGCTT
CAATTTTTTATCTCTTTGCCTGTTCTATTAATAGTAGTAGTAGTAGTCAC
GTTCCAAGCGGCAGTCGGCGATCGGTAGTCTACTCCATATAAAATTAATA
TCAAAGCATTTTGCTCTTGTTCTCATATACAGTAGAACGAAAGCCGCGTC
ACTAAACGAACCTCCCCGGACTGGGCCCTGTGGTGCAAGTTTGGTCCCAA
GTCGGTCCCGTGCGAGAATCAAGCAGCCTCTCACCTGACCCTACCTACCC
CCACGGCACACCCTACCTTTTCGCGCTACGCTGGCGCCCGCGGTATTTGA
TATATAACACAGGTGGGCGTGGTTGATCTACGCAGCGGTGGTGCTGTGCT
GCATCTGCCCTGTGCTGTTCTTCTTTTTCAAGTGGCGTCGGGATAAGGAG
GTCGAATCAGAGACACTATCACAATCACAAGGTTCGTCTTAAAAGGGCAG
GATGGTTCTATCGACTATTAGTCTCGACTAATAGTAGTAACTTAATAAAA
TATAGTTATCATTTTCACAAGAGAGGATACTGATGACGGTACCCAATCAG
GTCCAACGAGGGTTTTATAAAGAGCCTCGACCCGACTGGCTTCGCGTTCG
AAATCCCGGTGACATTTTGTCTTCTAGCTCCCGCCTTGCCACAAGTAAGC
TCTCTCTCTTTCTCTCTCTATCCATTTTTCATTCTTCCTTCCTTCATTCT
TCATTCCACCCCCTTACTAACCTCATAGCGTCCCTCATAGCGTGAACTTG
AATCCACTCCATCCCCTTGAAGTCGCTTTAGTTGCCCTGTCTGATGCGTG
TTTCGTGATGATTGTGTCGTGTATCGTGATGCTTTGATTCGTGGGCCGTG
ATGGGCGGTAACAGGAAAGGACTTTGGAACACCAGCTCCCCCGTCGGCAA
CATCCACTAACCCCTACGGTGGCGGAGGCGCAGGCGGAGGCGGCGGGGAG
GAGTACAAAAATGGGAAGGCCTAACTACGATAACTGCTATGACGAAATAA
GGGAGGGGCAAGAAGAGGGGGAGAAAGAGGAAAATATAGATGATTCCGAT
TGAGTACAGTACCTACCGCAAGTGTGGCATCATGCTTGAGCGCCAGGAAA
ACACATGATCTTGATTTTTGAGAGTGGTGGTGGTTGAACTCGTGCTCGAT
GGCGATGCTGGCGTCCTCGATAGCGATGCTGGCGCTGATTGGTTTTGCAG
AGCCTGATTAAACCACGGGTTGCTTTAGTATTTAGGTGGTGGACGTTTTG
GGTTTCTGCAAGGTCTGCAAGGTCTTGATTTGGGTAAGCGAAGGGAGTGA
AGGGTATGTCCTAATGTATTTTGCGAGTGAACGGTATGTCCTAAAGCAAG
CTCGAGCGTCCTTTGCCACCTCGAGAGTTTTATTTTCGGCCGTAAGCACC
GAGGTCAGAGGTCAGATCGCAACGCGCTTGGAGTACTGGAAAGACGGAAA
AGTTTGCCCTGGACACGACTTTACTGTATCATTCCTCAGCTGGGTAGGCT
GCTGGCGTTCTGTGTAGGTGTGTTGATGGAGTTGATGGAGTTGCCGCCCA
AAGCCTGGCAAGGAGGGGAGGGGGGATGATGGAGGGTCGACACAGTAGAC
CCGGCCCAGCAAGCGTATTTCCGTACCGCAGCTGTTGACAAAAATAGTGT
GCAAGTATTTTCAATATTATTTTGCAAGATTTGACCCCAACTGTGGCGCC
GTGTCGTATGTTCCACCTCTTCTTACTGGTGCCATTTATTGAGACAGTAG
ATCGTTAGACCTGGAAGGCGTTTTTAGGCAAGGCTGTGTTGGTTGTTTTC
TTCTTTATCTTTTCACCGCGGCGAGGAGAGGCTATTTATATTAATAGCTA
CCGTACGTATTGTTTTTTATGTTTCCTTTTTGGCAGGTATTACTATATTA
TATTACATTGAAATATTTTGTGATTTCCCTTGATATGCGTTTTTTGCACA
AGCTTGAATTGAAGTCCGTGTTTTGCGTCGATTCTCCCGGTGTAGGTAGG
GTTTGAAGTAGAGTATCATGTATCCTGTACCAGAAACCAGATCCACCGAA
TGAAGTGGAAGGTACTAGGCGGGAGAAAAGGTACTAATAATATTATATTA
ATAGGCGGGCAGCATACGGAATACTACGGAATATTAATATTGAGTACAGT
ATACAGTACCGTGCCTAATCATTTGAGTACAGTATACATTATCCTCTGCG
GCAGTTTATGGAAGAGAGAGGTCGAGGTCTCCCATTCTTGCAGCAAATTC
CATGGATAGGCTATTGATAGGTGGAGAGAAAGAGAGACAGATGAGGGTTG
TGGTTATGGTTAGTTTTCCTGCTACAGTATATATCAATGGCGAAATCTTG
GATAAATTCCCCAGGCTGTGTCATCAACGCTGAGAAGTCGCGGCGGCTGG
GGTGCGAATATGTCTGGAGCAGGTCAAATTGATGTGTATTATTGGCCGGC
CGCCTTAATAAGAATGTATATATAATCCTATATACTGTACACTGTACCCA
TTAGGGGTAGCGGTAGTAGCTGGTGTGGAAGCGTGTCCGAGCAGTTGCTC
TGTTAGACGCTCAGCCAACGCCTCTTGCGGATAATTATGCGCTTCATTCA
TGGATCTCCGTGGCAAGACTCCGCGGACTGTTTCGGTACTACCGTTATAA
TCGCTACCGTTATAAACTACCGTTATAATCGCTACCTGGTACCGTATTTC
ATTGCTATACTGTACTGTACTGTAAACTATAGTACATAATAGGTATTTCT
TCCCCACTCATGTAGACTATATCGGCATTTCTTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14511:395..5078-

>mRNA_H-elongata_contig14511.3089.1 ID=mRNA_H-elongata_contig14511.3089.1|Name=mRNA_H-elongata_contig14511.3089.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig14511:395..5078- (Himanthalia elongata Himel1 dioecious)
CAGTGGAAGAACGCGATCGTGGAGTTCTTCGAAATCGAGAACGAAGACTA
TGTGCAGGTCGATGATGAAGTGACCAGGTGCACTGTTGACGATTGGCAGC
GAAGAATCTCCATCTACAACGAGGAGGACGGCGACAGCACCGCGGCCGAT
GTTGCCTCGAGCCAGCAGTGGAAGAACGCGATCGTGGAGTTCTTCGAAAT
CGAGAACGAAGACTATGTGCAGGTCGATGATGAAGTGACCAGGTGCACTG
TTGACGATTGGCAGCGAAGAATCTCCATCTACAACGAGGAGGACGGCGAC
AGCACCGCGGCCGATGTTGCCTCGAGCCAGGTGGACTTGATCTACCCCAA
CTCGCCCACAGCCAAGACGACCGAATTCTTCGAAACCATTTCTAGTTCCA
TCAACGAACAGGACGAGGAGGTGGACTTGATCTACCCCAACTCGCCCACA
GCCAAGACGACCGAATTCTTCGAAACCATTTCTAGTTCCATCAACGAACA
GGACGAGGAGCTTTCCACTCCGGAGGCAAGTGACTTTGACCTTTTTAGTC
TGGGTTTCCTGGTGATATGGCTTGACTCGGACGGGGAAGTGGTGAGCTCT
CAGGGGACAAGTGAAGATAAAGACGTGGTGACCATCGGAGGCACCGACGT
GTGGTGGCCATGCTTTCCACTCCGGAGGCAAGTGACTTTGACCTTTTTAG
TCTGGGTTTCCTGGTGATATGGCTTGACTCGGACGGGGAAGTGGTGAGCT
CTCAGGGGACAAGTGAAGATAAAGACGTGGTGACCATCGGAGGCACCGAC
GTGTGGTGGCCATGGTGGGCGTGGTTGATCTACGCAGCGGTGGTGCTGTG
CTGCATCTGCCCTGTGCTGTTCTTCTTTTTCAAGTGGCGTCGGGATAAGG
AGGTCGAATCAGAGACACTATCACAATCACAAGGTGGGCGTGGTTGATCT
ACGCAGCGGTGGTGCTGTGCTGCATCTGCCCTGTGCTGTTCTTCTTTTTC
AAGTGGCGTCGGGATAAGGAGGTCGAATCAGAGACACTATCACAATCACA
AGGAAAGGACTTTGGAACACCAGCTCCCCCGTCGGCAACATCCACTAACC
CCTACGGTGGCGGAGGCGCAGGCGGAGGCGGCGGGGAGGAGTACAAAAAT
GGGAAGGCCTAAGAAAGGACTTTGGAACACCAGCTCCCCCGTCGGCAACA
TCCACTAACCCCTACGGTGGCGGAGGCGCAGGCGGAGGCGGCGGGGAGGA
GTACAAAAATGGGAAGGCCTAA
back to top