mRNA_H-elongata_contig145050.3088.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145050.3088.1
Unique NamemRNA_H-elongata_contig145050.3088.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145050.3088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145050contigH-elongata_contig145050:827..985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D7FSJ4
EggNOG OGs29314@1,2R9XZ@2759
Ec32 ortholog descriptionTrimeric LpxA-like
Ec32 orthologEc-11_003920.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929860.8342593-CDS-H-elongata_contig145050:826..9851622929860.8342593-CDS-H-elongata_contig145050:826..985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145050 827..985 -
1691679186.5991528-CDS-H-elongata_contig145050:826..9851691679186.5991528-CDS-H-elongata_contig145050:826..985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145050 827..985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145050.3088.1prot_H-elongata_contig145050.3088.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145050 827..985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145050.3088.1

>prot_H-elongata_contig145050.3088.1 ID=prot_H-elongata_contig145050.3088.1|Name=mRNA_H-elongata_contig145050.3088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
PDRVSSHDQVRALELNGNWATTDWSLVRVPKGDIPVERIRGCIFHGPVKL
GSL
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mRNA from alignment at H-elongata_contig145050:827..985-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145050.3088.1 ID=mRNA_H-elongata_contig145050.3088.1|Name=mRNA_H-elongata_contig145050.3088.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig145050:827..985- (Himanthalia elongata Himel1 dioecious)
CCCGACCGCGTCTCTTCACACGATCAGGTTAGAGCGCTCGAACTTAACGG
GAACTGGGCAACAACCGACTGGTCCCTAGTCCGCGTGCCCAAGGGGGACA
TTCCCGTCGAGCGCATCCGCGGGTGTATCTTCCACGGCCCGGTCAAGCTT
GGCAGCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig145050:827..985-

>mRNA_H-elongata_contig145050.3088.1 ID=mRNA_H-elongata_contig145050.3088.1|Name=mRNA_H-elongata_contig145050.3088.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig145050:827..985- (Himanthalia elongata Himel1 dioecious)
CCCGACCGCGTCTCTTCACACGATCAGGTTAGAGCGCTCGAACTTAACGG
GAACTGGGCAACAACCGACTGGTCCCTAGTCCGCGTGCCCAAGGGGGACA
TTCCCGTCGAGCGCATCCGCGGGTGTATCTTCCACGGCCCGGTCAAGCTT
GGCAGCCTCCCCGACCGCGTCTCTTCACACGATCAGGTTAGAGCGCTCGA
ACTTAACGGGAACTGGGCAACAACCGACTGGTCCCTAGTCCGCGTGCCCA
AGGGGGACATTCCCGTCGAGCGCATCCGCGGGTGTATCTTCCACGGCCCG
GTCAAGCTTGGCAGCCTC
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