mRNA_H-elongata_contig144984.3082.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144984.3082.1
Unique NamemRNA_H-elongata_contig144984.3082.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144984.3082.1 vs. uniprot
Match: A0A6H5JIB4_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIB4_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.310e-38
Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 1 
Query:    1 ETRQIKKAEALLKAYTREPACVPPLLQQMRSSQHEQARQLAAVLLKKKIVSHWKTFNDQEKESVKNVLLQGVGTDPSRLVRIAVASLIARLAKSLFAG-DGWQEVSPAIGR 330
            +T QIK+AE LLK YT+EP CVPPLLQQMRSSQHEQARQLAA+LLKKKIV HWKTFND EK          VGTDPSRLVRI+VASLIA+LAK+LFA   GWQE+   +G+
Sbjct:   32 DTAQIKRAEGLLKKYTKEPVCVPPLLQQMRSSQHEQARQLAAMLLKKKIVQHWKTFNDAEK---------AVGTDPSRLVRISVASLIAKLAKTLFATPQGWQELLDLVGQ 133
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BLAST of mRNA_H-elongata_contig144984.3082.1 vs. uniprot
Match: A0A7S0TCC5_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TCC5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.160e-16
Identity = 44/113 (38.94%), Postives = 67/113 (59.29%), Query Frame = 1 
Query:    1 ETRQIKKAEALLKAYTREPACVPPLLQQMRSSQHEQARQLAAVLLKKKIVSHWKTFNDQEKESVKNVLLQGVGTDPSRLVRIAVASLIARLAKSLFAGDGWQEVSPAIGRRSS 339
            +T QIK+AE  LK   ++  CVP L+ Q+R S +   RQ+AAV+L+KKIV  W+      +  VK  LL+ +  +P R VR ++A+L + LA++L     W E+   I + SS
Sbjct:   17 DTAQIKQAEEALKPVLKKAGCVPALMVQLRQSSNPAVRQIAAVVLRKKIVKLWRKLKKTTQHQVKAALLERLANEPERAVRKSIAALTSSLARALIPNGKWNELLQFISQCSS 129
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BLAST of mRNA_H-elongata_contig144984.3082.1 vs. uniprot
Match: A0A7R9TKJ7_MICPS (Hypothetical protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TKJ7_MICPS)

HSP 1 Score: 81.6 bits (200), Expect = 1.080e-15
Identity = 39/97 (40.21%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:   22 AEALLKAYTREPACVPPLLQQMRSSQHEQARQLAAVLLKKKIVSHWKTFNDQEKESVKNVLLQGVGTDPSRLVRIAVASLIARLAKSLFAGDGWQEV 312
            AEA L+  +R+P  VP LL   RS     ARQ+AAV+LK+++++HW+   +  +++VK  LL+GV  +P  LV+ A+A ++ ++AK+ FA   W E+
Sbjct:   51 AEATLRQLSRDPHVVPSLLAIARSDADANARQMAAVILKRRVIAHWQRLGESTRDAVKQSLLEGVVREPMHLVKRAIADVLGKVAKATFATGSWSEL 147
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BLAST of mRNA_H-elongata_contig144984.3082.1 vs. uniprot
Match: C1MTD7_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MTD7_MICPC)

HSP 1 Score: 81.6 bits (200), Expect = 1.110e-15
Identity = 39/97 (40.21%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:   22 AEALLKAYTREPACVPPLLQQMRSSQHEQARQLAAVLLKKKIVSHWKTFNDQEKESVKNVLLQGVGTDPSRLVRIAVASLIARLAKSLFAGDGWQEV 312
            AEA L+  +R+P  VP LL   RS     ARQ+AAV+LK+++++HW+   +  +++VK  LL+GV  +P  LV+ A+A ++ ++AK+ FA   W E+
Sbjct:   51 AEATLRQLSRDPHVVPSLLAIARSDADANARQMAAVILKRRVIAHWQRLGESTRDAVKQSLLEGVVREPMHLVKRAIADVLGKVAKATFATGSWSEL 147
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BLAST of mRNA_H-elongata_contig144984.3082.1 vs. uniprot
Match: G4YG60_PHYSP (Importin N-terminal domain-containing protein n=15 Tax=Peronosporaceae TaxID=4777 RepID=G4YG60_PHYSP)

HSP 1 Score: 78.2 bits (191), Expect = 1.820e-14
Identity = 45/104 (43.27%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:    1 ETRQIKKAEALLKAYTREPACVPPLLQQMRSSQHEQARQLAAVLLKKKIVSHWKTFNDQEKESVKNVLLQGVGTDPSRLVRIAVASLIARLAKSLFAGDGWQEV 312
            +T QIK+AEA LKAYT++ A V  LL Q++ S   + RQLAA++L+KKI  HW   +   +   K VLL     DP   VR  VA+LI  LA        W E+
Sbjct:   20 DTEQIKQAEAALKAYTKQIAAVGGLLTQLQHSAKPEVRQLAALMLRKKIFKHWPKLDAAAQAQAKQVLLSRAAEDPVHAVRSTVATLITALALHEVPSGNWPEL 123
[Close]
BLAST of mRNA_H-elongata_contig144984.3082.1 vs. uniprot
Match: H3GVK0_PHYRM (Importin N-terminal domain-containing protein n=20 Tax=Peronosporaceae TaxID=4777 RepID=H3GVK0_PHYRM)

HSP 1 Score: 77.8 bits (190), Expect = 2.480e-14
Identity = 45/104 (43.27%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:    1 ETRQIKKAEALLKAYTREPACVPPLLQQMRSSQHEQARQLAAVLLKKKIVSHWKTFNDQEKESVKNVLLQGVGTDPSRLVRIAVASLIARLAKSLFAGDGWQEV 312
            +T QIK+AEA LKAYT++ A V  LL Q++ S   + RQLAA++L+KKI  HW   +   +   K  LL     DP   VR  VA+LIA LA        W E+
Sbjct:   20 DTEQIKQAEAALKAYTKQIAAVGGLLTQLQLSAKPEVRQLAALMLRKKIFKHWPKLDAAAQAQAKQALLSRAAEDPVHAVRSTVATLIASLALHEVPSGNWPEL 123
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BLAST of mRNA_H-elongata_contig144984.3082.1 vs. uniprot
Match: W2ZH99_PHYPR (Importin N-terminal domain-containing protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2ZH99_PHYPR)

HSP 1 Score: 76.3 bits (186), Expect = 2.560e-14
Identity = 44/104 (42.31%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    1 ETRQIKKAEALLKAYTREPACVPPLLQQMRSSQHEQARQLAAVLLKKKIVSHWKTFNDQEKESVKNVLLQGVGTDPSRLVRIAVASLIARLAKSLFAGDGWQEV 312
            +T QIK+AE  LKAYT++ A V  LL Q++ S   + RQLAA++L+KKI  HW   +   +   K  LL     DP   VR  VA+LIA LA        W E+
Sbjct:   20 DTEQIKQAEVALKAYTKQIASVGGLLTQLQHSAKPEVRQLAALMLRKKIFKHWPKLDAAAQAQAKQALLSRAAEDPVHAVRSTVATLIAALALHEVPAGNWPEL 123
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BLAST of mRNA_H-elongata_contig144984.3082.1 vs. uniprot
Match: A0A835ZQ81_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ81_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.460e-14
Identity = 46/110 (41.82%), Postives = 60/110 (54.55%), Query Frame = 1 
Query:    1 ETRQIKKAEALLKAYTREPACVPPLLQQMRSSQHEQARQLAAVLLKKKIVSHWKTFNDQEKESVKNVLLQGVGTDPSRLVRIAVASLIARLAKSLFAGDGWQEVSPAIGR 330
            +T QIK AE +LK YT++P CVP L+  M+ S HEQ RQLAAVLLKKKI +HW  F  +E+               SR  R A  ++ A  A  +  G     +  A+GR
Sbjct:  269 DTEQIKAAEEILKQYTKKPQCVPALMSTMQISPHEQVRQLAAVLLKKKIAAHWAKFTPEEQAQTATTTKSHAR---SRTYRRASPNVCANGASPMAVGQVKNALLAAVGR 375
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BLAST of mRNA_H-elongata_contig144984.3082.1 vs. uniprot
Match: D8R1R8_SELML (Importin N-terminal domain-containing protein n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R1R8_SELML)

HSP 1 Score: 77.0 bits (188), Expect = 4.610e-14
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:   16 KKAEALLKAYTREPACVPPLLQQMRSSQHEQARQLAAVLLKKKIVSHWKTFNDQEKESVKNVLLQGVGTDPSRLVRIAVASLIARLAKSLFAGDGWQEVSPAI 324
            K AE  +K   R+P  VP LL Q+R+++    RQLAAVLL+KKIV  W   N Q   S+KN+LL+ +  D S  VR A A +++ LAK       W E+ P +
Sbjct:   20 KNAEEQIKHLARDPELVPALLHQIRNARSANVRQLAAVLLRKKIVGLWMKLNPQLHASLKNLLLESITLDNSLAVRRASADVVSALAKQDVPAGNWPELLPFL 122
[Close]
BLAST of mRNA_H-elongata_contig144984.3082.1 vs. uniprot
Match: F0YAJ8_AURAN (Importin N-terminal domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAJ8_AURAN)

HSP 1 Score: 77.0 bits (188), Expect = 4.630e-14
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:    1 ETRQIKKAEALLKAYTREPACVPPLLQQMRSSQHEQARQLAAVLLKKKIVSHWKTFNDQEKESVKNVLLQGVGTDPSRLVRIAVASLIARLAKSLFAGDGWQEVSPAIGR 330
            +T +IK+AE  LK   ++ ACV  L+ Q+ SS +   RQ+AAV+L+KKIV  WK      +  VK  +L+ +G++P R VR +VA+L + LAK L   + W E+   I +
Sbjct:   19 DTSRIKQAEDALKPVLKKSACVGALMTQVASSGNVAVRQIAAVILRKKIVKLWKKLKKSAQTRVKAAILERLGSEPERAVRKSVAALASALAKVLVPHNKWPELLAFISQ 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144984.3082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIB4_9PHAE1.310e-3871.17Importin N-terminal domain-containing protein n=2 ... [more]
A0A7S0TCC5_9STRA8.160e-1638.94Hypothetical protein n=1 Tax=Chrysocystis fragilis... [more]
A0A7R9TKJ7_MICPS1.080e-1540.21Hypothetical protein n=2 Tax=Micromonas pusilla Ta... [more]
C1MTD7_MICPC1.110e-1540.21Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
G4YG60_PHYSP1.820e-1443.27Importin N-terminal domain-containing protein n=15... [more]
H3GVK0_PHYRM2.480e-1443.27Importin N-terminal domain-containing protein n=20... [more]
W2ZH99_PHYPR2.560e-1442.31Importin N-terminal domain-containing protein n=1 ... [more]
A0A835ZQ81_9STRA3.460e-1441.82Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
D8R1R8_SELML4.610e-1442.72Importin N-terminal domain-containing protein n=6 ... [more]
F0YAJ8_AURAN4.630e-1440.00Importin N-terminal domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144984contigH-elongata_contig144984:733..1431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2.5e-40
Seed eggNOG ortholog2880.D7FQF7
KEGG koko:K20221
KEGG TC1.I.1
GOsGO:0000060,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0140104,GO:0140142
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.9612796-CDS-H-elongata_contig144984:732..9151622929859.9612796-CDS-H-elongata_contig144984:732..915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144984 733..915 +
1691679186.225524-CDS-H-elongata_contig144984:732..9151691679186.225524-CDS-H-elongata_contig144984:732..915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144984 733..915 +
1622929859.976973-CDS-H-elongata_contig144984:1266..14311622929859.976973-CDS-H-elongata_contig144984:1266..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144984 1267..1431 +
1691679186.2345526-CDS-H-elongata_contig144984:1266..14311691679186.2345526-CDS-H-elongata_contig144984:1266..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144984 1267..1431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144984.3082.1prot_H-elongata_contig144984.3082.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144984 733..1431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144984.3082.1

>prot_H-elongata_contig144984.3082.1 ID=prot_H-elongata_contig144984.3082.1|Name=mRNA_H-elongata_contig144984.3082.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
ETRQIKKAEALLKAYTREPACVPPLLQQMRSSQHEQARQLAAVLLKKKIV
SHWKTFNDQEKESVKNVLLQGVGTDPSRLVRIAVASLIARLAKSLFAGDG
WQEVSPAIGRRSSDL*
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mRNA from alignment at H-elongata_contig144984:733..1431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144984.3082.1 ID=mRNA_H-elongata_contig144984.3082.1|Name=mRNA_H-elongata_contig144984.3082.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=699bp|location=Sequence derived from alignment at H-elongata_contig144984:733..1431+ (Himanthalia elongata Himel1 dioecious)
GAAACGCGACAGATTAAGAAAGCCGAAGCCCTGCTGAAGGCGTACACGCG
GGAGCCGGCCTGCGTGCCTCCTCTGCTCCAACAAATGCGTTCTTCTCAGC
ACGAGCAGGCCAGACAGCTGGCAGCCGTCCTTCTCAAGAAAAAGATCGTT
TCGCACTGGAAAACGTTTAACGATCAGGAAAAGGTGATGATAGGAGCATC
ATCCTCGTGGAAGGGGAGGGGGGTTGTTTAACCTAGGTACTGTAAGGATG
GCTCTATTCTGTTATGTAGTGTAAGTGTAAGTGTATTCACTTTTCAATTG
TTACCAAGGGGAGAACTCGTTAGTTAGAGATCGAATTGTGAAGGGTAGAG
ACAACAAAAAAGAAAGAAACCTCTTAGTGGCGCAAGAAGGAGATTTTTAT
CTGCCGTCACGCGTTGCCCTGGGTCCTCAAGTGCATGCGAATGACGTGGC
TGCGTGTATGTGGCGCTCGTGCTTAACTTTAGTTAAGACATGACCTTAAC
GTTAACACCTTAATCTCGGGACCTCTGCTTACAGGAAAGCGTGAAGAATG
TGCTGCTGCAGGGGGTAGGCACGGATCCGTCGCGATTGGTACGAATCGCC
GTAGCATCGCTGATCGCGAGGCTGGCGAAGTCGCTGTTCGCGGGGGACGG
GTGGCAAGAGGTGAGCCCTGCCATAGGAAGGCGTAGCAGTGACTTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig144984:733..1431+

>mRNA_H-elongata_contig144984.3082.1 ID=mRNA_H-elongata_contig144984.3082.1|Name=mRNA_H-elongata_contig144984.3082.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig144984:733..1431+ (Himanthalia elongata Himel1 dioecious)
GAAACGCGACAGATTAAGAAAGCCGAAGCCCTGCTGAAGGCGTACACGCG
GGAGCCGGCCTGCGTGCCTCCTCTGCTCCAACAAATGCGTTCTTCTCAGC
ACGAGCAGGCCAGACAGCTGGCAGCCGTCCTTCTCAAGAAAAAGATCGTT
TCGCACTGGAAAACGTTTAACGATCAGGAAAAGGAAACGCGACAGATTAA
GAAAGCCGAAGCCCTGCTGAAGGCGTACACGCGGGAGCCGGCCTGCGTGC
CTCCTCTGCTCCAACAAATGCGTTCTTCTCAGCACGAGCAGGCCAGACAG
CTGGCAGCCGTCCTTCTCAAGAAAAAGATCGTTTCGCACTGGAAAACGTT
TAACGATCAGGAAAAGGAAAGCGTGAAGAATGTGCTGCTGCAGGGGGTAG
GCACGGATCCGTCGCGATTGGTACGAATCGCCGTAGCATCGCTGATCGCG
AGGCTGGCGAAGTCGCTGTTCGCGGGGGACGGGTGGCAAGAGGTGAGCCC
TGCCATAGGAAGGCGTAGCAGTGACTTGTGAGAAAGCGTGAAGAATGTGC
TGCTGCAGGGGGTAGGCACGGATCCGTCGCGATTGGTACGAATCGCCGTA
GCATCGCTGATCGCGAGGCTGGCGAAGTCGCTGTTCGCGGGGGACGGGTG
GCAAGAGGTGAGCCCTGCCATAGGAAGGCGTAGCAGTGACTTGTGA
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