mRNA_H-elongata_contig144885.3080.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144885.3080.1
Unique NamemRNA_H-elongata_contig144885.3080.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig144885.3080.1 vs. uniprot
Match: A0A6H5K3E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E4_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 3.950e-57
Identity = 88/122 (72.13%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    1 QAYVRDHPDEFLQPSGFVYHETRTGSTLVANMLAHVPSNLVVSENSLAEDPARRCSSCSPEQKTRLLRDVLTLMGSSSADHTHLFFKFQDSMTLGEMRKAFPDASWVFLFRDPVEVMVSNLK 366
            + Y+R+HP+EFLQP+GFVYHETRTGSTLVANMLAHVPSNLVVSEN++AEDP RRCS C+  QK  LLR+++TL+G+    H HLFFKFQDS TL  M KA+P+  WV+LFRDPVEVMVSNLK
Sbjct:  221 RTYMREHPEEFLQPNGFVYHETRTGSTLVANMLAHVPSNLVVSENNMAEDPVRRCSDCTEMQKVALLREIMTLLGNGRNGHEHLFFKFQDSTTLPLMMKAYPEVGWVYLFRDPVEVMVSNLK 342          
BLAST of mRNA_H-elongata_contig144885.3080.1 vs. uniprot
Match: D7G7C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C8_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 3.340e-55
Identity = 87/122 (71.31%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    1 QAYVRDHPDEFLQPSGFVYHETRTGSTLVANMLAHVPSNLVVSENSLAEDPARRCSSCSPEQKTRLLRDVLTLMGSSSADHTHLFFKFQDSMTLGEMRKAFPDASWVFLFRDPVEVMVSNLK 366
            + Y+R+HP+EFLQP+GFVYHETRTGSTLVANMLAHVPSNLVVSE+++AEDP RRCS C+  QK  LLR+++TL+G+    H HLFFKFQDS TL  M KA+P+  WV+LFRDPVEVMVSNLK
Sbjct:   97 RTYMREHPEEFLQPNGFVYHETRTGSTLVANMLAHVPSNLVVSESNMAEDPVRRCSHCTEMQKVTLLREIMTLLGNGRNGHKHLFFKFQDSTTLPLMMKAYPEVGWVYLFRDPVEVMVSNLK 218          
BLAST of mRNA_H-elongata_contig144885.3080.1 vs. uniprot
Match: A0A7S3ZKE9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKE9_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.620e-28
Identity = 59/115 (51.30%), Postives = 84/115 (73.04%), Query Frame = 1
Query:   34 LQPSGFVYHETRTGSTLVANMLAHVPSNLVVSENSLAEDPARRCSSCSPEQKTRLLRDVLTLMGSSSAD-HTHLFFKFQDSMTLGEMRK---AFPDASWVFLFRDPVEVMVSNLK 366
            ++PSGFV+HE+R GSTLVANMLA VP+N+V SE++        C SCS ++KT +L+ ++ LMG+S  + HTHLFFKFQ S T+  +R    AFP+  W+F++RDPV+ M+S+ K
Sbjct:  176 VKPSGFVFHESRVGSTLVANMLAAVPTNIVYSESAPPPAVLNHCRSCSKQRKTDILQKLIALMGASPTNYHTHLFFKFQ-SATVPNIRSLLDAFPETPWLFVYRDPVQTMMSHFK 289          
BLAST of mRNA_H-elongata_contig144885.3080.1 vs. uniprot
Match: D7G7Z3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z3_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.140e-27
Identity = 59/119 (49.58%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   10 VRDHPDEFLQPSGFVYHETRTGSTLVANMLAHVPSNLVVSENSLAEDPARRCSSCSPEQKTRLLRDVLTLMGSSSADHTHLFFKFQDSMTLGEMRKAFPDASWVFLFRDPVEVMVSNLK 366
            + ++PDEF+ P+GF+YHETR GSTL ANM+A VPSN+V            RC     E+   L+R V  LMG     HT LFFKFQ S  L  + +A+P+  W++LFRDP+EVM SNLK
Sbjct:  188 LEENPDEFMDPTGFIYHETRCGSTLSANMIAAVPSNIV-----------HRCPDGLREE---LVRTVFRLMGPVQDGHTDLFFKFQSSKFLPAIEQAWPETKWIYLFRDPLEVMSSNLK 292          
BLAST of mRNA_H-elongata_contig144885.3080.1 vs. uniprot
Match: A0A4D9CT70_9STRA (JmjC domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT70_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.970e-24
Identity = 57/115 (49.57%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   34 LQPSGFVYHETRTGSTLVANMLAHVPSNLVVSENSLAEDPARRCSS--CSPEQKTRLLRDVLTLMGSSSADHTHLFFKFQDS--MTLGEMRKAFPDASWVFLFRDPVEVMVSNLK 366
            LQP+GF++HE+R GSTLVANMLA VP+NLV SE S+       C S  CS E   RLLR  +  MG S   H H F KF  S  + +  + KAFP+  W +++RDPVE++VSN +
Sbjct:  211 LQPTGFIFHESRVGSTLVANMLASVPTNLVYSEPSVPAHVIHLCKSAGCSEETTVRLLRMAILAMGRSH-HHDHFFIKFSSSTVVDMDLILKAFPETPWAYIYRDPVEIIVSNFQ 324          
BLAST of mRNA_H-elongata_contig144885.3080.1 vs. uniprot
Match: D7FTH5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 6.480e-24
Identity = 56/115 (48.70%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   34 LQPSGFVYHETRTGSTLVANMLAHVPSNLVVSENSLAEDPARRC--SSCSPEQKTRLLRDVLTLMGS--SSADHTHLFFKFQDSMTLGEMRKAFPDASWVFLFRDPVEVMVSNLK 366
            L P GF+YHETR GSTLVANMLA +  + V SE+       R C  + C      ++ R+ + LMG   +   H HL+FKFQ+S  + E   A+P+  WVF+FRDPVEVMVSNLK
Sbjct:  196 LPPKGFIYHETRCGSTLVANMLATLAPSRVFSESKPPTQTIRECLTAGCDRHLLVKMFRNTMALMGRRRNGEQHEHLYFKFQNSKQISE---AYPEVPWVFVFRDPVEVMVSNLK 307          
BLAST of mRNA_H-elongata_contig144885.3080.1 vs. uniprot
Match: A0A7S3GTU2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTU2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.210e-23
Identity = 56/125 (44.80%), Postives = 79/125 (63.20%), Query Frame = 1
Query:   10 VRDHPDE----FLQPSGFVYHETRTGSTLVANMLAHVPSNLVVSENSLAEDPARRCSSCSPEQKTRLLRDVLTLMGSSSADHTHLFFKFQDSMTLGEMR---KAFPDASWVFLFRDPVEVMVSNL 363
            + D+P++     + P+GFV+HE+R GSTL+AN +A  P  +V SE++        C SC+ E   +L RDV TLMG S   H HLFFKFQ S+T+  M    +AFPD  W F++R PV+ M+S+L
Sbjct:   55 IADNPNDPNSRVVPPNGFVFHESRVGSTLIANFMASDPYAMVFSESTPMASAMLHCESCTHEYNVQLFRDVTTLMGRSPF-HKHLFFKFQ-SITVTSMNIALEAFPDVPWAFVYRQPVQTMMSHL 177          
BLAST of mRNA_H-elongata_contig144885.3080.1 vs. uniprot
Match: D7FT31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT31_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 4.330e-23
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   40 PSGFVYHETRTGSTLVANMLAHVPSNLVVSENSLAEDPARRCSSCSPEQKTRLLRDVLTLMGSSSADHTHLFFKFQDSMTLGEMRKAFPDASWVFLFRDPVEVMVSNL 363
            P+GF++HETR GSTLVANMLA V +N++ SE++        C  C  EQ    LR ++  M + SA H H +FKFQ S  +  +  A+PD  W+F+FR+P+EVM+S L
Sbjct:  141 PTGFIFHETRCGSTLVANMLASVETNVMWSESTGPWKVMHTCPKCHKEQIVPWLRVIMDAM-ARSARHDHFYFKFQSSEDIDAVTSAYPDTPWIFIFREPIEVMMSRL 247          
BLAST of mRNA_H-elongata_contig144885.3080.1 vs. uniprot
Match: A0A6H5JFB5_9PHAE (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFB5_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.410e-23
Identity = 56/128 (43.75%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 QAYVRDHPDEFLQPSGFVYHETRTGSTLVANMLAHVPSNLVVSENSLAEDPARRCSS--CSPEQKTRLLRDVLTLMGSSSADHTHLFFKFQDSMT--LGEMRKAFPDASWVFLFRDPVEVMVSNLKVK 372
            Q  +  +P+ +L+P+GFV+H +R GSTL AN++   P N+V SE+         C    C+ EQ+   LR V+  MG +S  H H+FFKFQ S T  +   RKAFP+  WVF++RDPV VM+S L  K
Sbjct:  140 QDEIDANPEGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVGCTEEQRVAALRTVILAMGKTSF-HKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLLGFK 266          
BLAST of mRNA_H-elongata_contig144885.3080.1 vs. uniprot
Match: A0A6H5KRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 9.300e-23
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   40 PSGFVYHETRTGSTLVANMLAHVPSNLVVSENSLAEDPARRCSSCSPEQKTRLLRDVLTLMGSSSADHTHLFFKFQDSMTLGEMRKAFPDASWVFLFRDPVEVMVSNL 363
            P+GF++HETR GSTLVANMLA V +N++ SE++        C  C  EQ    LR ++  M + SA H H +FKFQ S  +  +  A+PD  W+F+FR+P+EVM+S L
Sbjct:  274 PTGFIFHETRCGSTLVANMLASVETNVMWSESTGPWKVMHTCPKCHKEQIVPWLRVIMDAM-TRSARHKHFYFKFQSSEDIDAVTSAYPDTPWIFIFREPIEVMMSRL 380          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144885.3080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3E4_9PHAE3.950e-5772.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7C8_ECTSI3.340e-5571.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3ZKE9_9STRA2.620e-2851.30Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
D7G7Z3_ECTSI3.140e-2749.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CT70_9STRA1.970e-2449.57JmjC domain-containing protein n=3 Tax=Monodopsida... [more]
D7FTH5_ECTSI6.480e-2448.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3GTU2_9STRA3.210e-2344.80Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
D7FT31_ECTSI4.330e-2346.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFB5_9PHAE4.410e-2343.75JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KRY1_9PHAE9.300e-2346.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144885contigH-elongata_contig144885:595..1249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D7FL26
KEGG koko:K10277
EggNOG free text desc.tRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
EggNOG OGsKOG2132@1,KOG2132@2759
EC1.14.11.27
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.810668-CDS-H-elongata_contig144885:594..6841622929859.810668-CDS-H-elongata_contig144885:594..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144885 595..684 -
1691679186.1736825-CDS-H-elongata_contig144885:594..6841691679186.1736825-CDS-H-elongata_contig144885:594..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144885 595..684 -
1622929859.8264506-CDS-H-elongata_contig144885:961..12491622929859.8264506-CDS-H-elongata_contig144885:961..1249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144885 962..1249 -
1691679186.1864026-CDS-H-elongata_contig144885:961..12491691679186.1864026-CDS-H-elongata_contig144885:961..1249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144885 962..1249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144885.3080.1prot_H-elongata_contig144885.3080.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144885 595..1249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144885.3080.1

>prot_H-elongata_contig144885.3080.1 ID=prot_H-elongata_contig144885.3080.1|Name=mRNA_H-elongata_contig144885.3080.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
QAYVRDHPDEFLQPSGFVYHETRTGSTLVANMLAHVPSNLVVSENSLAED
PARRCSSCSPEQKTRLLRDVLTLMGSSSADHTHLFFKFQDSMTLGEMRKA
FPDASWVFLFRDPVEVMVSNLKVKL*
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mRNA from alignment at H-elongata_contig144885:595..1249-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144885.3080.1 ID=mRNA_H-elongata_contig144885.3080.1|Name=mRNA_H-elongata_contig144885.3080.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=655bp|location=Sequence derived from alignment at H-elongata_contig144885:595..1249- (Himanthalia elongata Himel1 dioecious)
CAGGCCTACGTCCGCGACCACCCGGACGAGTTCCTTCAGCCCAGCGGCTT CGTTTACCACGAGACTCGAACGGGGTCCACTCTGGTGGCGAACATGCTGG CGCACGTGCCGTCCAACCTCGTCGTGAGTGAGAACTCGCTCGCTGAAGAC CCGGCGCGCCGCTGCTCCTCCTGTTCCCCGGAGCAAAAGACGCGACTGCT GCGCGACGTGCTGACGCTGATGGGATCTTCCAGCGCGGACCACACCCATC TGTTTTTCAAGTTCCAGGATTCCATGACTCTCGGCGAGGTAAACAATCGA GCGAAAGAAGGGGGCTAAGAACGGACGCTGTTTTGAGCGCGAGGGAATGT GGGAAGGGGGTTTCCTAGCGAGAAATCAGGTAAAGAAATATAGTGCTTTT GATGTCAGACATCGTGGAAGAATGAGCGCAGAAAATAGTTTATTGTGATT GTAAACGCCTCCTTCTTCCCCCCCCCCCTCCTACACACACATACATCCCC TCGCGCGTTCGCCGTCGTTCCCACGGCTGCTGCGATTTGCCTCTTCTTTG CCTTCGGTTTTCCAGATGAGGAAGGCGTTCCCGGACGCTTCGTGGGTGTT CCTGTTCAGAGATCCCGTCGAGGTGATGGTGTCCAACCTCAAGGTGAAAC TTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig144885:595..1249-

>mRNA_H-elongata_contig144885.3080.1 ID=mRNA_H-elongata_contig144885.3080.1|Name=mRNA_H-elongata_contig144885.3080.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig144885:595..1249- (Himanthalia elongata Himel1 dioecious)
CAGGCCTACGTCCGCGACCACCCGGACGAGTTCCTTCAGCCCAGCGGCTT
CGTTTACCACGAGACTCGAACGGGGTCCACTCTGGTGGCGAACATGCTGG
CGCACGTGCCGTCCAACCTCGTCGTGAGTGAGAACTCGCTCGCTGAAGAC
CCGGCGCGCCGCTGCTCCTCCTGTTCCCCGGAGCAAAAGACGCGACTGCT
GCGCGACGTGCTGACGCTGATGGGATCTTCCAGCGCGGACCACACCCATC
TGTTTTTCAAGTTCCAGGATTCCATGACTCTCGGCGAGCAGGCCTACGTC
CGCGACCACCCGGACGAGTTCCTTCAGCCCAGCGGCTTCGTTTACCACGA
GACTCGAACGGGGTCCACTCTGGTGGCGAACATGCTGGCGCACGTGCCGT
CCAACCTCGTCGTGAGTGAGAACTCGCTCGCTGAAGACCCGGCGCGCCGC
TGCTCCTCCTGTTCCCCGGAGCAAAAGACGCGACTGCTGCGCGACGTGCT
GACGCTGATGGGATCTTCCAGCGCGGACCACACCCATCTGTTTTTCAAGT
TCCAGGATTCCATGACTCTCGGCGAGATGAGGAAGGCGTTCCCGGACGCT
TCGTGGGTGTTCCTGTTCAGAGATCCCGTCGAGGTGATGGTGTCCAACCT
CAAGGTGAAACTTTGAATGAGGAAGGCGTTCCCGGACGCTTCGTGGGTGT
TCCTGTTCAGAGATCCCGTCGAGGTGATGGTGTCCAACCTCAAGGTGAAA
CTTTGA
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