mRNA_H-elongata_contig144882.3079.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144882.3079.1
Unique NamemRNA_H-elongata_contig144882.3079.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig144882.3079.1 vs. uniprot
Match: D7FGQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGQ0_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 2.160e-45
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:    1 VTLGPLLLSLGVNIFNRINSVDGPCPVCGVPLQGLKNAQNQCPSCGTMLVTENGKFEPLGSGYVRDEAGTQQKFSRTGDSGVIDVDAIDVDD 276
            +T+GP+L S G+N++NRIN VD PCPVCGV LQGLKN QNQCPSCG ML+ ++GKFE +GSGYVRDEAGTQ++FSR GDSGVIDVDAIDVDD
Sbjct:  145 ITVGPILFSAGLNLYNRINLVDAPCPVCGVDLQGLKNKQNQCPSCGAMLLAKDGKFEAVGSGYVRDEAGTQREFSRMGDSGVIDVDAIDVDD 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144882.3079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGQ0_ECTSI2.160e-4576.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144882contigH-elongata_contig144882:747..1621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_001300.1
Exons2
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.7336335-CDS-H-elongata_contig144882:746..8771622929859.7336335-CDS-H-elongata_contig144882:746..877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144882 747..877 +
1691679186.1538086-CDS-H-elongata_contig144882:746..8771691679186.1538086-CDS-H-elongata_contig144882:746..877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144882 747..877 +
1622929859.750051-CDS-H-elongata_contig144882:1473..16211622929859.750051-CDS-H-elongata_contig144882:1473..1621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144882 1474..1621 +
1691679186.1623087-CDS-H-elongata_contig144882:1473..16211691679186.1623087-CDS-H-elongata_contig144882:1473..1621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144882 1474..1621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144882.3079.1prot_H-elongata_contig144882.3079.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144882 747..1621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144882.3079.1

>prot_H-elongata_contig144882.3079.1 ID=prot_H-elongata_contig144882.3079.1|Name=mRNA_H-elongata_contig144882.3079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
VTLGPLLLSLGVNIFNRINSVDGPCPVCGVPLQGLKNAQNQCPSCGTMLV
TENGKFEPLGSGYVRDEAGTQQKFSRTGDSGVIDVDAIDVDD*
back to top

mRNA from alignment at H-elongata_contig144882:747..1621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144882.3079.1 ID=mRNA_H-elongata_contig144882.3079.1|Name=mRNA_H-elongata_contig144882.3079.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=875bp|location=Sequence derived from alignment at H-elongata_contig144882:747..1621+ (Himanthalia elongata Himel1 dioecious)
GTCACTCTGGGACCACTGCTGCTGTCCCTCGGCGTGAACATCTTCAACAG
GATCAATTCCGTTGATGGTCCGTGCCCCGTGTGCGGCGTACCGCTGCAGG
GGCTCAAGAATGCGCAGAACCAGTGCCCTAGGTAAGCAACCGAAGACCCG
ACGGGGTAATACAATCCTCATGGCGGCGCTATACCCTCAGAACCCTCAGA
AACGTGGTTTGCCTGGGGGGTTGCTTCGAAGTGTTTGGATATTAATACGA
CTGGTTGGTGGTCGGTAAGGGAAATACCAGCCCTCTCGTGCGATGGGCCG
CTTTGGTAGTTGTTCGCCGAAGGTGCGGTGTGATAGCCCTCGGTTTTCAT
TGCGCACGGCTTGTCCGTCCGTACGTACGTCCCTTATTCGCACTACTCCG
TGGTGCAGTAATTTTAGTATATTTCGAGCTATCGCTAGCCGCGTGCCAAG
TTTCGAGATCGGTGGTAGCGCCAAGAGATATGCCGCTTTTTGAAAGCGTT
CGAACGTGCAAACAAGTGCCCTGGAGCGTTCGCGCCCGCAGCATTTGTTC
GTTCGTCCATTCCGCAGCGGCAGCGGCGACGGCTTGGTCCAGCCGGTGCT
TCAGCAGCGCCTCAGACCCATCAAAACCTCAGGCGCGAAATAACTAATTG
TACGTAAAGGCCGTATCTCTTTCGGCTGAACGCAACCCACCCGTGTCCCT
CTTTCATTCCTCCCGCGTGTGCTCCAGCTGTGGGACAATGCTCGTAACGG
AAAATGGCAAGTTTGAACCGTTGGGGTCTGGCTACGTGAGGGATGAGGCG
GGGACGCAGCAAAAGTTTTCCCGCACGGGCGACAGCGGCGTTATAGACGT
GGACGCTATCGACGTCGACGATTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig144882:747..1621+

>mRNA_H-elongata_contig144882.3079.1 ID=mRNA_H-elongata_contig144882.3079.1|Name=mRNA_H-elongata_contig144882.3079.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig144882:747..1621+ (Himanthalia elongata Himel1 dioecious)
GTCACTCTGGGACCACTGCTGCTGTCCCTCGGCGTGAACATCTTCAACAG
GATCAATTCCGTTGATGGTCCGTGCCCCGTGTGCGGCGTACCGCTGCAGG
GGCTCAAGAATGCGCAGAACCAGTGCCCTAGGTCACTCTGGGACCACTGC
TGCTGTCCCTCGGCGTGAACATCTTCAACAGGATCAATTCCGTTGATGGT
CCGTGCCCCGTGTGCGGCGTACCGCTGCAGGGGCTCAAGAATGCGCAGAA
CCAGTGCCCTAGCTGTGGGACAATGCTCGTAACGGAAAATGGCAAGTTTG
AACCGTTGGGGTCTGGCTACGTGAGGGATGAGGCGGGGACGCAGCAAAAG
TTTTCCCGCACGGGCGACAGCGGCGTTATAGACGTGGACGCTATCGACGT
CGACGATTGACTGTGGGACAATGCTCGTAACGGAAAATGGCAAGTTTGAA
CCGTTGGGGTCTGGCTACGTGAGGGATGAGGCGGGGACGCAGCAAAAGTT
TTCCCGCACGGGCGACAGCGGCGTTATAGACGTGGACGCTATCGACGTCG
ACGATTGA
back to top