mRNA_H-elongata_contig144835.3078.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144835.3078.1
Unique NamemRNA_H-elongata_contig144835.3078.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144835.3078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144835contigH-elongata_contig144835:890..1300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144835.3078.1prot_H-elongata_contig144835.3078.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144835 923..1243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.6440482-UTR-H-elongata_contig144835:889..9221622929859.6440482-UTR-H-elongata_contig144835:889..922Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144835 890..922 +
1691679186.1267757-UTR-H-elongata_contig144835:889..9221691679186.1267757-UTR-H-elongata_contig144835:889..922Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144835 890..922 +
1622929859.6862826-UTR-H-elongata_contig144835:1243..13001622929859.6862826-UTR-H-elongata_contig144835:1243..1300Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144835 1244..1300 +
1691679186.1445923-UTR-H-elongata_contig144835:1243..13001691679186.1445923-UTR-H-elongata_contig144835:1243..1300Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144835 1244..1300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.671952-CDS-H-elongata_contig144835:922..12431622929859.671952-CDS-H-elongata_contig144835:922..1243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144835 923..1243 +
1691679186.1353276-CDS-H-elongata_contig144835:922..12431691679186.1353276-CDS-H-elongata_contig144835:922..1243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144835 923..1243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144835.3078.1

>prot_H-elongata_contig144835.3078.1 ID=prot_H-elongata_contig144835.3078.1|Name=mRNA_H-elongata_contig144835.3078.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MNGANTVSVSYAAGNSSRKLPIFGPAFYSWRFSVRMSSKLYGFCSTVFWG
LWECRRRIFADKKKRQPVNNDVVVASSLCLSLKNTSCFVWSHTPAVMTKV
APTDRE*
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mRNA from alignment at H-elongata_contig144835:890..1300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144835.3078.1 ID=mRNA_H-elongata_contig144835.3078.1|Name=mRNA_H-elongata_contig144835.3078.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig144835:890..1300+ (Himanthalia elongata Himel1 dioecious)
AGTTCGTATTTTTGTAAGGAAAATGAAACGGCAATGAACGGTGCAAATAC
TGTTTCTGTTTCTTATGCGGCCGGAAATTCCAGCCGGAAATTACCCATTT
TCGGTCCAGCATTTTACAGCTGGAGATTTTCTGTTCGCATGTCTTCTAAG
CTGTACGGTTTTTGTTCAACCGTTTTCTGGGGTCTATGGGAATGTCGAAG
GCGCATATTCGCTGATAAAAAAAAACGACAGCCCGTTAACAATGATGTTG
TTGTGGCTTCAAGTCTGTGTCTTTCTTTGAAAAACACGAGCTGTTTTGTT
TGGTCTCATACACCAGCAGTAATGACAAAGGTCGCTCCTACAGACAGAGA
GTAGCATAGGTGGACGATTTACTGATCTGTCTGTACTCTATAGATACTAC
TACTGCTGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig144835:890..1300+

>mRNA_H-elongata_contig144835.3078.1 ID=mRNA_H-elongata_contig144835.3078.1|Name=mRNA_H-elongata_contig144835.3078.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig144835:890..1300+ (Himanthalia elongata Himel1 dioecious)
ATGAACGGTGCAAATACTGTTTCTGTTTCTTATGCGGCCGGAAATTCCAG
CCGGAAATTACCCATTTTCGGTCCAGCATTTTACAGCTGGAGATTTTCTG
TTCGCATGTCTTCTAAGCTGTACGGTTTTTGTTCAACCGTTTTCTGGGGT
CTATGGGAATGTCGAAGGCGCATATTCGCTGATAAAAAAAAACGACAGCC
CGTTAACAATGATGTTGTTGTGGCTTCAAGTCTGTGTCTTTCTTTGAAAA
ACACGAGCTGTTTTGTTTGGTCTCATACACCAGCAGTAATGACAAAGGTC
GCTCCTACAGACAGAGAGTAGATGAACGGTGCAAATACTGTTTCTGTTTC
TTATGCGGCCGGAAATTCCAGCCGGAAATTACCCATTTTCGGTCCAGCAT
TTTACAGCTGGAGATTTTCTGTTCGCATGTCTTCTAAGCTGTACGGTTTT
TGTTCAACCGTTTTCTGGGGTCTATGGGAATGTCGAAGGCGCATATTCGC
TGATAAAAAAAAACGACAGCCCGTTAACAATGATGTTGTTGTGGCTTCAA
GTCTGTGTCTTTCTTTGAAAAACACGAGCTGTTTTGTTTGGTCTCATACA
CCAGCAGTAATGACAAAGGTCGCTCCTACAGACAGAGAGTAG
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