mRNA_H-elongata_contig144727.3074.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144727.3074.1
Unique NamemRNA_H-elongata_contig144727.3074.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144727.3074.1 vs. uniprot
Match: D7FZL9_ECTSI (XRRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL9_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 8.100e-15
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   16 YEEGKIVHVTEIPESGVSRESLRGALKPYGNVLYVDFSFGDREAWIR 156
            YE GKI+H+  IPESGVSRESL+ A++ +G  LYVDFSFG REAWIR
Sbjct:  161 YEAGKIIHIAGIPESGVSRESLKNAVESFGTALYVDFSFGGREAWIR 207
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BLAST of mRNA_H-elongata_contig144727.3074.1 vs. uniprot
Match: A0A6H5JWB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB6_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 9.920e-11
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   49 IPESGVSRESLRGALKPYGNVLYVDFSFGDREAWIR 156
            IPESGVSRESL+ A++ +G  LY+DFSFG REAWIR
Sbjct:    6 IPESGVSRESLKQAVESFGTALYIDFSFGAREAWIR 41
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144727.3074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZL9_ECTSI8.100e-1570.21XRRM domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JWB6_9PHAE9.920e-1172.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144727contigH-elongata_contig144727:284..1357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.3110118-CDS-H-elongata_contig144727:283..4001622929859.3110118-CDS-H-elongata_contig144727:283..400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144727 284..400 -
1691679186.0440826-CDS-H-elongata_contig144727:283..4001691679186.0440826-CDS-H-elongata_contig144727:283..400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144727 284..400 -
1622929859.330217-CDS-H-elongata_contig144727:1318..13571622929859.330217-CDS-H-elongata_contig144727:1318..1357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144727 1319..1357 -
1691679186.0553474-CDS-H-elongata_contig144727:1318..13571691679186.0553474-CDS-H-elongata_contig144727:1318..1357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144727 1319..1357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144727.3074.1prot_H-elongata_contig144727.3074.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144727 284..1357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144727.3074.1

>prot_H-elongata_contig144727.3074.1 ID=prot_H-elongata_contig144727.3074.1|Name=mRNA_H-elongata_contig144727.3074.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
PQEPDYEEGKIVHVTEIPESGVSRESLRGALKPYGNVLYVDFSFGDREAW
IR
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mRNA from alignment at H-elongata_contig144727:284..1357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144727.3074.1 ID=mRNA_H-elongata_contig144727.3074.1|Name=mRNA_H-elongata_contig144727.3074.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1074bp|location=Sequence derived from alignment at H-elongata_contig144727:284..1357- (Himanthalia elongata Himel1 dioecious)
CCACAAGAGCCCGATTATGAGGAGGGAAAAATTGTGCACGTGAGGGAGAT
CTAAAGATAATCTAGCGTTATCTTCCTTTCTGTTCCACGAAATGTTACTT
TTTTGGTACCCGTTACACGTGTTATACTCTACTTTTTTAGACGATACACA
AAATCTTACCACACATAACATTATAACACCATAACGCACATTACCCATAT
AGTCATAAAATCGGCTAGAGAATCGGGAGTTCCTTTTTTTCCGGCATGTT
GCTGCTAATTTTTCTTTTCGTACATGTAGTAGGATAATACACGGTATTAA
TAACCTCATCAAAACTCCCCTTCTTTACAGCCCACTTTCTTAACCCCTAT
GGAACTCTTATCTGTTTTTTATATACTAAATTCAATACAAAATTAAAATC
CAGTTCCAAAAGGGTTAAGTTCTGGTTTAGCGTCATAGTCCCCACATGAC
GAATAATAGTAGCAATAGTATGAAGAGTACGGGATAATGGAATCCTTGAC
ATTATTCCCTTGACCCGATGAACGTAATATTATTAGGGAACACGATTCAT
CACATGCGACGATTTTGTGCTTAAATGTTGTAATGTACACATCTAAACCT
GACGATAGTTGGTCCCCTGGACTGCACCTCTCACGGTGCTAAGAAGGTGT
GAGTGTTCGGAGGGTTGAAATTAGTTCATATGTTTTAAAAAGAAAAATAA
TACGGGAGCTTTAGGTGCTAAATAATAGAGTATTAGTAGTACCTGCTAAT
AAATAATACAGCTCTATTTTAATGGTTTCGTATAGAAATGGATGGATGTT
TGGATGTGGAGCTAGCGACGAAGTCTAGAACAAAATAGCACATCGTTAGG
CAAGGCAGTCCCCAAGTTTTTCACAATTGACGCGATATCGATGACGTCGC
GTACGGCGATGGGTCTGCGCCGCAATATCTTGGCGTCCTGGATGTCTTGA
TACGCAGGTGACCGAAATTCCTGAATCGGGGGTTTCGCGCGAGAGCCTGC
GGGGGGCCCTGAAGCCATACGGAAACGTCTTATACGTAGATTTTTCTTTC
GGTGACCGGGAGGCTTGGATCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig144727:284..1357-

>mRNA_H-elongata_contig144727.3074.1 ID=mRNA_H-elongata_contig144727.3074.1|Name=mRNA_H-elongata_contig144727.3074.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig144727:284..1357- (Himanthalia elongata Himel1 dioecious)
CCACAAGAGCCCGATTATGAGGAGGGAAAAATTGTGCACCCACAAGAGCC
CGATTATGAGGAGGGAAAAATTGTGCACGTGACCGAAATTCCTGAATCGG
GGGTTTCGCGCGAGAGCCTGCGGGGGGCCCTGAAGCCATACGGAAACGTC
TTATACGTAGATTTTTCTTTCGGTGACCGGGAGGCTTGGATCAGGGTGAC
CGAAATTCCTGAATCGGGGGTTTCGCGCGAGAGCCTGCGGGGGGCCCTGA
AGCCATACGGAAACGTCTTATACGTAGATTTTTCTTTCGGTGACCGGGAG
GCTTGGATCAGG
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