mRNA_H-elongata_contig144668.3070.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144668.3070.1
Unique NamemRNA_H-elongata_contig144668.3070.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144668.3070.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 64.7 bits (156), Expect = 5.550e-11
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = -1 
Query:   13 RPDHRMTSYNRALEMTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEG 177
            R DH   SY +AL +TRCESIETT+R RRL +AG ++R   GRLP R+ FG + G
Sbjct:   46 RTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAG 100
[Close]
BLAST of mRNA_H-elongata_contig144668.3070.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC)

HSP 1 Score: 63.9 bits (154), Expect = 1.350e-10
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = -1 
Query:   13 RPDHRMTSYNRALEMTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEG 177
            R DH   SY +AL+MTRCESIETT+R RRL +AG + R S  RLP R+ FG + G
Sbjct:    8 RTDHATLSYAKALKMTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAG 62
[Close]
BLAST of mRNA_H-elongata_contig144668.3070.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.650e-9
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = -1 
Query:    1 KRPDHRMTSYNRALEMTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRR 180
            K+  +R  SY R LE   C+S+E T+R RRLL+AG L R   GRLPKR+ FG L G  +R
Sbjct:  433 KKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKR 492
[Close]
BLAST of mRNA_H-elongata_contig144668.3070.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.250e-9
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = -1 
Query:    1 KRPDHRMTSYNRALEMTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRR 180
            K+  +R  SY + L+   C+S+E T+R RRLL+AG+L R   GRLPKR+ FG L G  +R
Sbjct:   38 KKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKR 97
[Close]
BLAST of mRNA_H-elongata_contig144668.3070.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 9.370e-9
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = -1 
Query:    1 KRPDHRMTSYNRALEMTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRR 180
            K+  +R  SY + L    CES+E T+R RRLL+AG L R   GRLPKR+ FG L G  +R
Sbjct:  170 KKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKR 229
[Close]
BLAST of mRNA_H-elongata_contig144668.3070.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.790e-8
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = -1 
Query:    1 KRPDHRMTSYNRALEMTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEGAVRR 180
            K+  +R  SY + L+   C+S+E T+R RRLL+AG L R   GRLPKR+ FG L G  +R
Sbjct:  522 KKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKR 581
[Close]
BLAST of mRNA_H-elongata_contig144668.3070.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.760e-8
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = -1 
Query:   13 KRPDHRMTSYNRALEMTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEG 180
            K+  +R  SY + L+   C+S+E T+R RRLL+AG L R   GRLPKR+ FG L G
Sbjct:  314 KKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAG 369
[Close]
BLAST of mRNA_H-elongata_contig144668.3070.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 7.010e-8
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = -1 
Query:   13 KRPDHRMTSYNRALEMTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEG 180
            KR  +R  SY +AL+   C+S+E T+R RRLL+AG + R   GRLPKR+ FG L G
Sbjct:  149 KRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVG 204
[Close]
BLAST of mRNA_H-elongata_contig144668.3070.1 vs. uniprot
Match: A0A6H5JUC2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC2_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 8.230e-8
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = -1 
Query:   13 KRPDHRMTSYNRALEMTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEG 180
            KR  +R  SY +AL+   C+S+E T+R RR+L+AG + R   GRLPKR+ FG L G
Sbjct:  121 KRGTYRQLSYAQALKRVGCQSVEATVRQRRVLFAGAVARQPDGRLPKRLMFGELVG 176
[Close]
BLAST of mRNA_H-elongata_contig144668.3070.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 8.430e-8
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = -1 
Query:   13 KRPDHRMTSYNRALEMTRCESIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLEG 180
            KR  +R  SY +AL+   C+S+E T+R RRLL+AG + R   GRLPKR+ FG L G
Sbjct:  200 KRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVG 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144668.3070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001AA1A1FE5.550e-1156.36hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
UPI001AA1AADC1.350e-1058.18hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5JLT1_9PHAE1.650e-951.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JYE2_9PHAE5.250e-948.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JAH7_9PHAE9.370e-950.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE3.790e-848.33Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JBT6_9PHAE6.760e-850.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLH5_9PHAE7.010e-851.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUC2_9PHAE8.230e-850.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KLX9_9PHAE8.430e-851.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144668contigH-elongata_contig144668:1219..1487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.055231-CDS-H-elongata_contig144668:1218..12791622929859.055231-CDS-H-elongata_contig144668:1218..1279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144668 1219..1279 -
1691679185.9666338-CDS-H-elongata_contig144668:1218..12791691679185.9666338-CDS-H-elongata_contig144668:1218..1279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144668 1219..1279 -
1622929859.0777717-CDS-H-elongata_contig144668:1305..14871622929859.0777717-CDS-H-elongata_contig144668:1305..1487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144668 1306..1487 -
1691679185.9758308-CDS-H-elongata_contig144668:1305..14871691679185.9758308-CDS-H-elongata_contig144668:1305..1487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144668 1306..1487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144668.3070.1prot_H-elongata_contig144668.3070.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144668 1219..1487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144668.3070.1

>prot_H-elongata_contig144668.3070.1 ID=prot_H-elongata_contig144668.3070.1|Name=mRNA_H-elongata_contig144668.3070.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
SPYCTLKVSEGDSLWQPPAAHTDERSRPQKSSRAQRCLNALAPGHLKGTV
VRGHPVVWSLAPGGVRCGVWRSRLADGIIK*
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mRNA from alignment at H-elongata_contig144668:1219..1487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144668.3070.1 ID=mRNA_H-elongata_contig144668.3070.1|Name=mRNA_H-elongata_contig144668.3070.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=269bp|location=Sequence derived from alignment at H-elongata_contig144668:1219..1487- (Himanthalia elongata Himel1 dioecious)
TCTCCGTACTGCACCCTCAAGGTTTCCGAAGGCGATTCGCTTTGGCAACC
GCCCGCCGCTCATACGGATGAGCGTTCCCGCCCACAAAAGTCTTCTCGTG
CGCAACGTTGTCTCAATGCTCTCGCACCGGGTCATCTCAAGGGCACGGTT
GTACGAGGTCATCCGGTGGTCTGGTCTCTTGCGCTGTGTCCCGATTATGC
GAAGCAAGACCCGGTGGTGTACGGTGCGGAGTTTGGCGTAGTCGTTTGGC
GGATGGTATTATCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig144668:1219..1487-

>mRNA_H-elongata_contig144668.3070.1 ID=mRNA_H-elongata_contig144668.3070.1|Name=mRNA_H-elongata_contig144668.3070.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig144668:1219..1487- (Himanthalia elongata Himel1 dioecious)
TCTCCGTACTGCACCCTCAAGGTTTCCGAAGGCGATTCGCTTTGGCAACC
GCCCGCCGCTCATACGGATGAGCGTTCCCGCCCACAAAAGTCTTCTCGTG
CGCAACGTTGTCTCAATGCTCTCGCACCGGGTCATCTCAAGGGCACGGTT
GTACGAGGTCATCCGGTGGTCTGGTCTCTTGCTCTCCGTACTGCACCCTC
AAGGTTTCCGAAGGCGATTCGCTTTGGCAACCGCCCGCCGCTCATACGGA
TGAGCGTTCCCGCCCACAAAAGTCTTCTCGTGCGCAACGTTGTCTCAATG
CTCTCGCACCGGGTCATCTCAAGGGCACGGTTGTACGAGGTCATCCGGTG
GTCTGGTCTCTTGCACCCGGTGGTGTACGGTGCGGAGTTTGGCGTAGTCG
TTTGGCGGATGGTATTATCAAGTGAACCCGGTGGTGTACGGTGCGGAGTT
TGGCGTAGTCGTTTGGCGGATGGTATTATCAAGTGA
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