mRNA_H-elongata_contig144651.3067.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144651.3067.1
Unique NamemRNA_H-elongata_contig144651.3067.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144651.3067.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.920e-16
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 CDVCALGKAQQLAYPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTTVYLLTTK 201
            CDVCA+G ++Q  +PK A++  +RPFQL   DLMGPF+P A+GG+ Y+ K  D++ KW  V+L+  K
Sbjct:  301 CDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEK 367
[Close]
BLAST of mRNA_H-elongata_contig144651.3067.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.130e-15
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 CDVCALGKAQQLAYPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTTVYLLTTK 201
            C  CALGK+ Q  +PK A + V RPFQL + D +GPFTP A+GG+KY +K  D+ TKW  + L+  K
Sbjct:  561 CGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDK 627
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BLAST of mRNA_H-elongata_contig144651.3067.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.870e-15
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 CDVCALGKAQQLAYPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTTVYLLTTKDQ 207
            C+ C L K+ Q  +PKTA H   +P Q  Y DL+GP +P A GG+ YVSK TDEY++   VYL+ TKD+
Sbjct:  503 CETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDE 571
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BLAST of mRNA_H-elongata_contig144651.3067.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 7.210e-15
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 CDVCALGKAQQLAYPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTTVYLLTTKDQ 207
            C+ C + K+ Q  +PKTA H   +P Q  Y DL+GP +P A GGY YVSK TDEY++   VYL+ +KD+
Sbjct:   21 CETCIIQKSTQKKHPKTAQHTAVQPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDE 89
[Close]
BLAST of mRNA_H-elongata_contig144651.3067.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 7.310e-15
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 CDVCALGKAQQLAYPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTTVYLLTTK 201
            C  C LGK+ Q  +PK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K
Sbjct:  608 CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674
[Close]
BLAST of mRNA_H-elongata_contig144651.3067.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 7.350e-15
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 CDVCALGKAQQLAYPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTTVYLLTTK 201
            C  C LGK+ Q  +PK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K
Sbjct:  730 CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 796
[Close]
BLAST of mRNA_H-elongata_contig144651.3067.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 7.350e-15
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 CDVCALGKAQQLAYPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTTVYLLTTK 201
            C  C LGK+ Q  +PK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K
Sbjct:  608 CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674
[Close]
BLAST of mRNA_H-elongata_contig144651.3067.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.740e-14
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 CDVCALGKAQQLAYPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKW 174
            C  C LGK+ Q  +PK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW
Sbjct:   79 CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 136
[Close]
BLAST of mRNA_H-elongata_contig144651.3067.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.250e-13
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    1 CDVCALGKAQQLAYPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTTVYLLTTKDQ 207
            C VC LGK+ Q  +PK   + V RPFQ    D +GPFTP A+GG+KY +K  D+ TKW  + L+  KDQ
Sbjct:  321 CCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLM--KDQ 387
[Close]
BLAST of mRNA_H-elongata_contig144651.3067.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.200e-13
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    1 CDVCALGKAQQLAYPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTTVYLL 192
            CD+CA+ K++QLA+P+  N +   P QL Y D MG  TP+A GG+ YVSK TD Y+    +YLL
Sbjct:  343 CDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLL 406
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144651.3067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE7.920e-1649.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE1.130e-1550.75Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KY84_9PHAE2.870e-1550.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE7.210e-1549.28Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KJN3_9PHAE7.310e-1549.25Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE7.350e-1549.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE7.350e-1549.25Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KNH5_9PHAE4.740e-1451.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KXM1_9PHAE2.250e-1349.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYD3_9PHAE4.200e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144651contigH-elongata_contig144651:155..361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.1
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog4565.Traes_3B_D5F0C4EDC.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.5395513-CDS-H-elongata_contig144651:154..3611622929858.5395513-CDS-H-elongata_contig144651:154..361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144651 155..361 -
1691679185.9026127-CDS-H-elongata_contig144651:154..3611691679185.9026127-CDS-H-elongata_contig144651:154..361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144651 155..361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144651.3067.1prot_H-elongata_contig144651.3067.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144651 155..361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144651.3067.1

>prot_H-elongata_contig144651.3067.1 ID=prot_H-elongata_contig144651.3067.1|Name=mRNA_H-elongata_contig144651.3067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
CDVCALGKAQQLAYPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSK
ITDEYTKWTTVYLLTTKDQ
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mRNA from alignment at H-elongata_contig144651:155..361-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144651.3067.1 ID=mRNA_H-elongata_contig144651.3067.1|Name=mRNA_H-elongata_contig144651.3067.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig144651:155..361- (Himanthalia elongata Himel1 dioecious)
TGCGACGTTTGCGCCTTGGGGAAGGCTCAGCAGCTTGCTTATCCCAAGAC
GGCCAATCACAAGGTCAACCGGCCTTTCCAGCTGTGCTACGGAGACCTGA
TGGGGCCCTTCACGCCTGTGGCCATAGGCGGCTACAAGTACGTCAGCAAA
ATAACCGACGAGTACACAAAGTGGACCACCGTCTACTTGTTGACTACGAA
GGACCAA
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Coding sequence (CDS) from alignment at H-elongata_contig144651:155..361-

>mRNA_H-elongata_contig144651.3067.1 ID=mRNA_H-elongata_contig144651.3067.1|Name=mRNA_H-elongata_contig144651.3067.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig144651:155..361- (Himanthalia elongata Himel1 dioecious)
TGCGACGTTTGCGCCTTGGGGAAGGCTCAGCAGCTTGCTTATCCCAAGAC
GGCCAATCACAAGGTCAACCGGCCTTTCCAGCTGTGCTACGGAGACCTGA
TGGGGCCCTTCACGCCTGTGGCCATAGGCGGCTACAAGTACGTCAGCAAA
ATAACCGACGAGTACACAAAGTGGACCACCGTCTACTTGTTGACTACGAA
GGACCAATGCGACGTTTGCGCCTTGGGGAAGGCTCAGCAGCTTGCTTATC
CCAAGACGGCCAATCACAAGGTCAACCGGCCTTTCCAGCTGTGCTACGGA
GACCTGATGGGGCCCTTCACGCCTGTGGCCATAGGCGGCTACAAGTACGT
CAGCAAAATAACCGACGAGTACACAAAGTGGACCACCGTCTACTTGTTGA
CTACGAAGGACCAA
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