prot_H-elongata_contig103692.306.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig103692.306.1
Unique Name	prot_H-elongata_contig103692.306.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	104

Homology

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BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: D8LAZ6_ECTSI (RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ6_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 3.600e-44
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 0

Query:    4 SAEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 100
            +AEKAQY+ LDCEMVGVGP GCRSALA CC+VDWDG  I+DK+V P ERVTDFRTFVSGV+A  L GG+ LRQCQ E+AAI+K+K +VGHAL NDLK
Sbjct:  267 AAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGDTIYDKHVTPNERVTDFRTFVSGVKANHLKGGVRLRQCQEEVAAILKDKVLVGHALTNDLK 363

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BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: W7U6T2_9STRA (RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6T2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.030e-34
Identity = 59/101 (58.42%), Postives = 81/101 (80.20%), Query Frame = 0

Query:    1 DVPSAEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLKV 101
            D+   EK+ Y+GLDCEMVGVG  G RSALA   +VD+DG++I+D++V P ER+TDFRT+VSGV+AK L   LSL++C +++A ++K K IVGHAL+NDL+V
Sbjct:   93 DMTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQV 193

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BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A836CG98_9STRA (RNA exonuclease 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG98_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.550e-31
Identity = 59/101 (58.42%), Postives = 70/101 (69.31%), Query Frame = 0

Query:    3 PSAEKA-QYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGG--LSLRQCQIEIAAIMKEKYIVGHALQNDLK 100
            PS E   QY+ LDCEMVG G +G  SALA CC+ DW G  ++  YV P ERVTDFRTFVSG+RA  L G   ++L +CQ  +AAI K + IVGHAL NDLK
Sbjct:   39 PSPEVCEQYVALDCEMVGTGVSGRHSALAQCCITDWHGNTLYCSYVRPPERVTDFRTFVSGIRATHLKGADAVTLLECQKAVAAITKGRIIVGHALHNDLK 139

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BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A1V9YXD8_9STRA (RNA exonuclease 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXD8_9STRA)

HSP 1 Score: 117 bits (292), Expect = 8.650e-30
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 0

Query:    6 EKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 100
            + +  + +DCEMVGVG +G RS LA C +VD+DG +++DK+V P ERVTDFRT VSG+R+K L   +   QCQ E+A I ++K +VGHAL+ND++
Sbjct:   61 DTSTIVAMDCEMVGVGSDGARSVLARCSIVDFDGNVVYDKHVKPMERVTDFRTHVSGIRSKHLRDAIPFTQCQQEVAEIFEDKILVGHALRNDMQ 155

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BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A067BGR3_SAPPC (RNA exonuclease 4 (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BGR3_SAPPC)

HSP 1 Score: 114 bits (286), Expect = 1.470e-29
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 0

Query:   11 IGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 100
            + +DCEMVGVG +G RS LA C +VD+DG +++D++V P ERVTDFRT VSG+RAK L   L   QCQ ++AAI   K +VGHA++ND++
Sbjct:   73 VAMDCEMVGVGSDGKRSVLARCSIVDFDGNVVYDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQ 162

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BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A024UI79_9STRA (RNA exonuclease 4 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI79_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.810e-29
Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 0

Query:    6 EKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 100
            +    + +DCEMVGVG  G RS LA C +VD+DG +++D++V P E+VTDFRT VSG+R+K L   +   +CQ+++AAI+K+K +VGHA++NDL+
Sbjct:   84 DTTSIVAMDCEMVGVGVGGTRSVLARCSIVDFDGNVVYDEHVKPLEKVTDFRTHVSGIRSKSLRKAIPFAKCQVDVAAILKDKILVGHAVRNDLQ 178

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BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A7S1YYA6_TRICV (RNA exonuclease 4 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YYA6_TRICV)

HSP 1 Score: 114 bits (285), Expect = 2.450e-29
Identity = 50/98 (51.02%), Postives = 72/98 (73.47%), Query Frame = 0

Query:    2 VPSAEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDL 99
            VP  E+++Y+ +DCEMVG+G  G  SALA   +VDWDGK++ D +V   +RVTDFRT+VSGVR+KD+   +    C+ ++A I+K K +VGH+L+NDL
Sbjct:   61 VPEPERSRYVAVDCEMVGIGSAGRTSALARTSLVDWDGKVLLDTFVRVPDRVTDFRTWVSGVRSKDIRNAMEPEDCREKVAEILKGKVLVGHSLKNDL 158

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BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A316U9R8_9BASI (RNA exonuclease 4 n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U9R8_9BASI)

HSP 1 Score: 117 bits (294), Expect = 2.890e-29
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 0

Query:    6 EKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 100
            E  Q+I +DCEMVGVG  G  S LA   +V+W G ++ D++V P E+VTD+RT+VSGVRAKDL G  S ++ Q E+AA++K + +VGHA+QNDLK
Sbjct:  166 EPGQFIAIDCEMVGVGEKGSESVLARVSIVNWHGHVLMDRFVKPMEKVTDYRTWVSGVRAKDLQGAPSFKEVQAEVAALVKGRVLVGHAIQNDLK 260

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BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A6G0X6W8_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6W8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.550e-29
Identity = 48/95 (50.53%), Postives = 73/95 (76.84%), Query Frame = 0

Query:    6 EKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 100
            + ++ + +DCEMVGVG +G RS LA C +VD+DG +++D++V P E+VTDFRT VSG+R+K L   +   +CQ ++ AI+K+K +VGHAL+NDL+
Sbjct:   72 DTSKIVAMDCEMVGVGLSGTRSVLARCSIVDFDGNVVYDEHVKPMEKVTDFRTHVSGIRSKSLRNAIPFPKCQQDVGAILKDKILVGHALRNDLQ 166

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BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A316VDZ4_9BASI (RNA exonuclease 4 n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316VDZ4_9BASI)

HSP 1 Score: 116 bits (290), Expect = 5.940e-29
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 0

Query:    5 AEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDL 99
            AE   YI +DCEMVGVGPNG  S LA C +V+W G ++ D +V P E+VTD+RT+VSGVRAKDL G     + Q ++A ++K + +VGHAL NDL
Sbjct:  149 AEAGTYIAMDCEMVGVGPNGSESVLARCSIVNWHGAVLLDTFVRPQEKVTDYRTWVSGVRAKDLKGAPQFAEVQEKVANLIKGRILVGHALHNDL 243

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot

BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LAZ6_ECTSI	3.600e-44	74.23	RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus T...	[more]
W7U6T2_9STRA	5.030e-34	58.42	RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=42...	[more]
A0A836CG98_9STRA	6.550e-31	58.42	RNA exonuclease 4 n=1 Tax=Tribonema minus TaxID=30...	[more]
A0A1V9YXD8_9STRA	8.650e-30	52.63	RNA exonuclease 4 n=1 Tax=Thraustotheca clavata Ta...	[more]
A0A067BGR3_SAPPC	1.470e-29	55.56	RNA exonuclease 4 (Fragment) n=1 Tax=Saprolegnia p...	[more]
A0A024UI79_9STRA	1.810e-29	50.53	RNA exonuclease 4 n=2 Tax=Aphanomyces invadans Tax...	[more]
A0A7S1YYA6_TRICV	2.450e-29	51.02	RNA exonuclease 4 (Fragment) n=1 Tax=Trieres chine...	[more]
A0A316U9R8_9BASI	2.890e-29	54.74	RNA exonuclease 4 n=1 Tax=Pseudomicrostroma glucos...	[more]
A0A6G0X6W8_9STRA	5.550e-29	50.53	RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches Ta...	[more]
A0A316VDZ4_9BASI	5.940e-29	54.74	RNA exonuclease 4 n=1 Tax=Meira miltonrushii TaxID...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 12..94 e-value: 3.2E-4 score: 21.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 5..102 e-value: 4.7E-26 score: 93.3
None	No IPR available	PANTHER	PTHR12801	EXONUCLEASE	coord: 8..101
IPR034920	RNA exonuclease 4	PANTHER	PTHR12801:SF45	RNA EXONUCLEASE 4	coord: 8..101
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 10..101

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig103692	contig	H-elongata_contig103692:54..800 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig103692.306.1	mRNA_H-elongata_contig103692.306.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig103692 54..800 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig103692.306.1 ID=prot_H-elongata_contig103692.306.1|Name=mRNA_H-elongata_contig103692.306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
DVPSAEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPA
ERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK
VQY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013520	Exonuclease_RNaseT/DNA_pol3
IPR036397	RNaseH_sf
IPR034920	Rex4
IPR012337	RNaseH-like_sf