mRNA_H-elongata_contig14462.3062.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14462.3062.1
Unique NamemRNA_H-elongata_contig14462.3062.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14462.3062.1 vs. uniprot
Match: A0A6H5JUD4_9PHAE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUD4_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 1.580e-98
Identity = 166/278 (59.71%), Postives = 201/278 (72.30%), Query Frame = 1 
Query:  523 GNLVCTRAPQ----VRAMVRNVDDFFPRKSDLGNGPIEVVLGDVLDKTSLAVAMEDCQSCIDCHRPHPLVQPRDLWTHPKKDEAKTHPYYVNYIGTKNLIEAAEKARVKRLVRITGLTCGLSAFNPFTYLLNLMASMTIKWQFECEKEIRAAAER-GLAYTVIRPGALTDKSRPKDACLMLACDGKPTPVLKARRMYTISRKEVADLMVLAMQSKNAAGATLSCSWGRDKS--GPKSWKSLMAKVRPDKSPLPKRNYRASMAFLGSITLAAALAVGSK 1335
            G LVC R  +    VRAMVR++D F+PRK ++GNGPIEVVLGDVLDK SL   M  C SCI CH         D WT  K  E K HPY VNYIGT N+++AA+KA VKR VR+TGL+ GLSAFNPFTYLLNL+ SM+IKWQ+  E+ IR AAER GL YTV+RPGALT + RPKDACLML CDGKPT + K++ MY I R++VA+L+V AM  K  A +TLSCSWG+DK   GP+SWK+L+A V  D SPLP+R YR +M  +G++ L    AVG K
Sbjct:   50 GQLVCLRLSKQGYKVRAMVRDLDGFYPRKEEMGNGPIEVVLGDVLDKASLEAHMAGCSSCIACHGASRASALSDWWTRLKNAE-KGHPYNVNYIGTMNMLDAAQKAGVKRFVRLTGLSVGLSAFNPFTYLLNLIISMSIKWQYMGERAIREAAERSGLDYTVVRPGALTHEKRPKDACLMLECDGKPTSMWKSQPMYKIGRQDVANLLVAAMAHKRGAKSTLSCSWGKDKKREGPRSWKTLLAAVNADTSPLPRRFYRPAMIVMGTLNLIVGGAVGGK 326
[Close]
BLAST of mRNA_H-elongata_contig14462.3062.1 vs. uniprot
Match: A0A6S9JTY3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JTY3_HETAK)

HSP 1 Score: 139 bits (351), Expect = 9.780e-33
Identity = 91/255 (35.69%), Postives = 139/255 (54.51%), Query Frame = 1 
Query:  619 IEVVLGDVLDKTSLAVAMEDCQSCIDCHRPHPLVQPRDLWTHPKKDEAKTHPYYVNYIGTKNLIEAAEKARVKRLVRITGLTCGLSAFNPFTYLLNLMASMTIKWQFECEKEIRAAAERGLAYTVIRPGALT-DKSR-PKDACLMLACDGKPTPVLKARRMYTISRKEVADLMVLAMQSKNAAGATLSCSWGRDKSGPKSWKSLMAKVRPDKSPLPKRNYRASMAFLGSITLAAALAVGSKVAIILNFVADQKRK 1377
            +E+V GD+ +   +  A+  C++CI C  P  L +  DLW  P  D    HPY VN+ G  NL  A + A   ++VR+TGL+ G+S ++    LLNL+ S T++WQ   E+ IRA+   GL YTVIRPGAL+ D S  P+   L LA DG   P   A  +  + R++VA L    +   NA  ATL   W R +  PK+W  L+ +VR D++ L  + + A +  L    L A ++  +  ++I++ +    +K
Sbjct:   98 VEIVKGDLTEPEDIKAAVTGCKACICCSGPKRLSRVSDLWRDPAGDRG--HPYEVNFRGVANLAAALKAAGATKIVRVTGLSVGMSPYSLVPALLNLVISRTVRWQLAGERAIRAS---GLDYTVIRPGALSRDASEAPEGYGLTLADDGGLPPPPPASEIR-VGRRDVARLCADCLAHPNARRATLGALWSRAEGAPKTWGPLLEEVREDRTDLVDKPFLAGVRLLLLAVLGATVSGLALTSLIVSKIILAMKK 346
[Close]
BLAST of mRNA_H-elongata_contig14462.3062.1 vs. uniprot
Match: A0A7S0L9A3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9A3_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 1.600e-23
Identity = 77/238 (32.35%), Postives = 120/238 (50.42%), Query Frame = 1 
Query:  496 STRSRNRSSGNLVCTRAPQVRAMVRNVDDFFPRKSDLGNGP-------------IEVVLGDVLDKTSLAVAMEDCQSCIDCHRPHPLVQPRDLWTHPKKDEAKTHPYYVNYIGTKNLIEAAEKARVKRLVRITGLTCGLSAFNPFTYLLNLMASMTIKWQFECEKEIRAAAERGLAYTVIRPGALTDKSRPKDACLMLACDGKPTPVLKARRMYTISRKEVADLMVLAMQSKNAAGAT 1170
            +T    R+S   +  R   VR +VR   D    +S   +               +++V GDV D+T++A A+  C +C+  H      + RDLW+ P +D   TH  YVNY G +NLI+AA++   +R+VR+TG   G + ++ F+ L+N + SM   W +E E+ +RA  +  + YT+IRPG +   +    + L LA DG    V        IS   +A L V  ++S NAA  T
Sbjct:    9 ATGRLGRASVQHLLERGYTVRCLVRRTPDATTEQSANADATPEAVAAWLAAQPNVQLVPGDVTDRTAVAEALRGCGACLALHGARRARKLRDLWSDPLQDP--THSKYVNYEGVRNLIDAAKECGTRRVVRVTGK--GETPWSIFSILINGIGSMAKAWNYEGERLLRACPD--VEYTIIRPGVMGSIATNPPSSLALADDGADLKV------SAISHSAIAALCVDVLESPNAARTT 234
[Close]
BLAST of mRNA_H-elongata_contig14462.3062.1 vs. uniprot
Match: A0A7S0S8E7_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S8E7_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 1.290e-21
Identity = 75/210 (35.71%), Postives = 107/210 (50.95%), Query Frame = 1 
Query:  607 GNGPIEVVLGDVLDK----------TSLAVAMEDCQSCIDCHRPHPLVQPRDLWTHPKKDEAKTHPYYVNYIGTKNLIE-AAEKARVKRLVRITGLTCGLSAFNPFTYLLNLMASMTIKWQFECEKEIRAAAERGLAYTVIRPGALTDKSRPKDACLMLACDGKPTPVLKARRMYTISRKEVADLMVLAMQSKNAAGATLSCSWGRDKSG 1203
            G G +EVV GDV +           T+L  AM  C   I C     + +  D++T P+ D    HP  VNY G   L   AAE   V+R VR+TG++ G    +    LLN + SMTI+WQ   E  +R++   G+AYTV+RPG+L+D+ R   + L+L   G   P  K      +SR +VA+++ LA     AA ATL  +     +G
Sbjct:  178 GGGAVEVVRGDVTESDAADGAGDEATNLRNAMRGCTQVIACFGAQRIARVTDVFTSPE-DRDPEHPAAVNYRGVALLAALAAESGTVRRFVRVTGMSVGYPPMHIVAVLLNTVLSMTIRWQLRGEMAVRSS---GVAYTVVRPGSLSDQPRAGGSVLLLGHGGAHVPAGK------VSRDDVAEVITLATFHPAAANATLGIAGAMQPTG 377
[Close]
BLAST of mRNA_H-elongata_contig14462.3062.1 vs. uniprot
Match: A0A7S1HA13_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HA13_HEMAN)

HSP 1 Score: 102 bits (255), Expect = 2.140e-20
Identity = 75/226 (33.19%), Postives = 117/226 (51.77%), Query Frame = 1 
Query:  619 IEVVLGDVLDKTSLAVAMEDCQS--CIDCHRPHPLVQPRDLWTHPKKDEAKTHPYYVNYIGTKNLIEAAEKAR--VKRLVRITGLTCGLSAFNPFTYLLNLMASMTIKWQFECEKEIRAAAERGLAYTVIRPGALTD--KSRPKDACLMLACDGKPTPVLKARRMYTISRKEVADLMVLAMQSKNAAGATLSCS----------WGRDKSGPKSWKSLMAKVRPDK 1248
            +EVV  D+ D+ SL  A+  C++  C    +P    +  DLW+ P  D    HP  +N  G +NLI A E+    V++LVR+TGL+ GLS ++P + L +L+ S   +W  E E  IRA++   + YTVIRP  + D  K+      L+LA D       +      ISR++VADL+  ++  K  + ATL  S          +  D  G  +W +++ +V PD+
Sbjct:   34 VEVVKADLRDRESLTEAVRGCRAVICTAAVKPMRFGKVSDLWSDPFSDPG--HPANLNLRGIQNLISACEETSPPVQKLVRVTGLSVGLSPWSPISILFSLVNSFANRWNREGELAIRASS---MDYTVIRPAGIKDCPKASETGDKLLLATDAPEWEGQRPPATTGISREDVADLVCASVDDKRLSKATLRVSRMARGTARNFYRDDARGGYTWDAIIPRVLPDR 254
[Close]
BLAST of mRNA_H-elongata_contig14462.3062.1 vs. uniprot
Match: A0A1Y5I3B7_OSTTA (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I3B7_OSTTA)

HSP 1 Score: 103 bits (257), Expect = 4.470e-20
Identity = 78/239 (32.64%), Postives = 119/239 (49.79%), Query Frame = 1 
Query:  523 GNLVCTR----APQVRAMVRNVDDFFPRKSDLGNGPIEVVLGDVLDKTSLAVAMEDCQS--CIDCHRPHPLVQPRDLWTHPKKDEAKTHPYYVNYIGTKNLIEAAEKARVKRLVRITGLTCGLSAFNPFTYLLNLMASMTIKWQFECEKEIRAAAERG-LAYTVIRPGALTDKSRPKD-----ACLMLACDGKPTPVLKARRMYTISRKEVADLMVLAMQSKNAAGATLSCSWGRDKSG 1203
            G LVC R       VR + R+ +    R   L +   EVV GDV D+ S+  A+  C+    I       + +  D+ T+P   +AK HP +VNY+G   L   + +A  ++ VR+TG + G  AF+    LLN++ SMTI+WQ   E  +RAA E+  + Y V+RPG L D  R  +       ++L   G      K      ISR +VAD++V A++ +     TL+ +   + SG
Sbjct:   74 GRLVCERLRATGRAVRVVTRDAESETARA--LRDAGCEVVGGDVGDEASMRAALSGCEGGCVIATFGAQRIGRVTDVVTNPSLRDAK-HPRFVNYLGAATLARLSSEAGARKFVRVTGASVGYPAFDFIAVLLNVVLSMTIRWQLAGEMAVRAACEKSSMKYVVVRPGNLADFERCDEDESGNRRVVLGSGGSRVEAGK------ISRSDVADVIVEALERQECENVTLTVAGLTNPSG 303
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BLAST of mRNA_H-elongata_contig14462.3062.1 vs. uniprot
Match: A0A7S2RX68_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RX68_9STRA)

HSP 1 Score: 100 bits (249), Expect = 5.690e-19
Identity = 72/198 (36.36%), Postives = 101/198 (51.01%), Query Frame = 1 
Query:  598 SDLGNGPIEVVLGDVLDKTSLAVAMEDCQSCIDCHRPHPLVQPRDLWTHPKKDEAK-THPYYVNYIGTKNLIEAAEKARVKRLVRITGLTCGLSAFNPFTYLLNLMASMTIKWQFECEKEIRAAAERGLAYTVIRPGALTDKSRPKDACLML-ACDGKPTPVLKARRMYTISRKEVADLMVLAMQSKNAAGATLSCSW 1185
            +DL +  ++ VL   L   + AV M    S I   +   ++ P +L      DE   THPY+VNY G   +++A   A VK++VR+TGL+  L AFNP + + N++ SMT KW   C  E     E  L YT+IRPG L D  R  +  L   A    P P L       + RK+VADL V ++ +  A+   LSC W
Sbjct:  132 TDLADSDVDEVLAKALTGCT-AVVMVSGASRIT--KLQDILWPPNLLGKKAHDEQDPTHPYFVNYRGVARVLQAMRVAGVKKIVRLTGLSSSLPAFNPVSIIFNMLLSMTSKWH--CYTEALLMQEPDLDYTIIRPGGLRDGPRGDNVKLQASALTPVPPPAL-------VGRKDVADLCVESLGNPLASRRGLSCRW 317
[Close]
BLAST of mRNA_H-elongata_contig14462.3062.1 vs. uniprot
Match: A0A6C0AVZ9_9ZZZZ (NAD(P)-bd_dom domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AVZ9_9ZZZZ)

HSP 1 Score: 80.9 bits (198), Expect = 3.580e-13
Identity = 49/169 (28.99%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  526 NLVCTRAPQVRAMVRNVDDFFPRKSDLGNGPIEVVLGDVLDKTSLAVAMEDCQSCIDCHRPHPLVQPRDLWTHP----KKDEAKTHPYYVNYIGTKNLIEAAEKARVKRLVRITGLTCGLSAFNPFTYLLNLMASMTIKWQFECEKEIRAAAERGLAYTVIRPGALTDK 1020
            N +  R  +++ +VRN         ++    +E+V GD+L+   L   M++C+  ++ H  + +  P     H          K HP+YVNYIG KN+I++ ++  + +L+R T     L+ ++P + LL+   S  I W    E +I ++   GL YT+IRPG + +K
Sbjct:   38 NKLNMRGVEMKCLVRNTQKAERLFQNMDC--VELVEGDILEYDYLKNIMKECEMSVNLHSVNRVSNPFRRHNHNYDIITNSLDKNHPFYVNYIGMKNIIKSCKENNINKLIRTTDRATALAPYHPTSLLLDSFHSDQIFWHRHSENDIISS---GLVYTIIRPGGIHNK 201
[Close]
BLAST of mRNA_H-elongata_contig14462.3062.1 vs. uniprot
Match: A0A6M0SGQ5_9CYAN (SDR family oxidoreductase n=3 Tax=Leptolyngbyaceae TaxID=1890438 RepID=A0A6M0SGQ5_9CYAN)

HSP 1 Score: 77.8 bits (190), Expect = 1.610e-12
Identity = 69/221 (31.22%), Postives = 107/221 (48.42%), Query Frame = 1 
Query:  487 GTSSTRSRNRSSGNLVCTRAPQVRAMVRNVDDFFPRKSDLGNGPIEVVLGDVLDKTSLAVAMEDCQSCIDCHRPHPLVQPRDLWTHPKKDEAKTHPYYVNYIGTKNLIEAAEKARVKRLVRITGLTCGLSAFNPFTYLLNLMASMTIKWQFECEKEIRAAAERGLAYTVIRPGALTDKSRPKDACLMLACDGKPTPVLKARRMYT--ISRKEVADLMVLAM 1143
            G +  R  N+ SG+ V      V+AMVR+      + +D     +EVV+GDVL   +LAVA+  C + I      P                 T PY V+++GTKNL++AA+ A VKR V ++ L C    F+P    LNL   + + W+ + E  I   A  GL YT++RPG L ++             G P  +  A  ++   I+R++VA + + A+
Sbjct:   10 GQTGRRITNQLSGSDVA-----VKAMVRDRS----KAADFSEA-VEVVVGDVLKPETLAVAIAGCDAIICATGAAPSFD-------------MTGPYQVDFVGTKNLVDAAKLADVKRFVIVSSL-CVSKFFHP----LNLFW-LVLYWKKQAENYI---ANSGLTYTIVRPGGLRNED-----------SGDPILMASADTLFEGGIAREKVAQVCIAAL 187
[Close]
BLAST of mRNA_H-elongata_contig14462.3062.1 vs. uniprot
Match: UPI00168641C3 (SDR family oxidoreductase n=1 Tax=Oscillatoria sp. FACHB-1406 TaxID=2692846 RepID=UPI00168641C3)

HSP 1 Score: 75.1 bits (183), Expect = 1.380e-11
Identity = 70/231 (30.30%), Postives = 108/231 (46.75%), Query Frame = 1 
Query:  553 VRAMVRNVD---DFFPRKSDLGNGPIEVVLGDVLDKTSLAVAMEDCQSCIDCHRPHPLVQPRDLWTHPKKDEAKTHPYYVNYIGTKNLIEAAEKARVKRLVRITGLTCGLSAFNPFTYLLNLMASMTIKWQFECEKEIRAAAERGLAYTVIRPGALTDKSRPKDACLMLACDGKPTPVLKARRMYTISRKEVADLMVLAMQSKNAAGATLSCSWGRDKSGPKSWKSLMAKV 1236
            VRAMVR+++   +  P ++DL       V+GDVL++ SLA A+ DC   I      P                 T PY V+Y GTKNL+EAA+   +++ V ++ L C    F+P    LNL   + + W+ + E  I+ +   GL YT++RPG L ++    D+ +M + D     + + R    I R +VA   V A+    A    +      D    K W+ L   V
Sbjct:   27 VRAMVRDLEKGREILPPEADL-------VVGDVLNRASLADAIADCTHLICATGATPSFD-------------ATGPYKVDYEGTKNLVEAAKSKNIQQFVLVSSL-CTSKFFHP----LNLFW-LVLYWKQQAENYIQKS---GLPYTIVRPGGLLNEDN-SDSIIMASAD----TLFEGR----IPRTKVAQTCVAALFQPEAKNKIVEIVAAPDAPA-KEWQQLFTSV 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14462.3062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUD4_9PHAE1.580e-9859.71NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A6S9JTY3_HETAK9.780e-3335.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0L9A3_9EUKA1.600e-2332.35Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S0S8E7_9CHLO1.290e-2135.71Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A7S1HA13_HEMAN2.140e-2033.19Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A1Y5I3B7_OSTTA4.470e-2032.64NAD(P)-bd_dom domain-containing protein n=2 Tax=Os... [more]
A0A7S2RX68_9STRA5.690e-1936.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6C0AVZ9_9ZZZZ3.580e-1328.99NAD(P)-bd_dom domain-containing protein n=1 Tax=vi... [more]
A0A6M0SGQ5_9CYAN1.610e-1231.22SDR family oxidoreductase n=3 Tax=Leptolyngbyaceae... [more]
UPI00168641C31.380e-1130.30SDR family oxidoreductase n=1 Tax=Oscillatoria sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14462contigH-elongata_contig14462:88..4127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score321.6
Seed ortholog evalue4.3e-85
Seed eggNOG ortholog2880.D7G863
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-12_001350.1
Exons7
Model size2067
Cds size1014
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.845415-UTR-H-elongata_contig14462:87..3861622929857.845415-UTR-H-elongata_contig14462:87..386Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14462 88..386 +
1691679185.638315-UTR-H-elongata_contig14462:87..3861691679185.638315-UTR-H-elongata_contig14462:87..386Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14462 88..386 +
1622929857.8609765-UTR-H-elongata_contig14462:470..5491622929857.8609765-UTR-H-elongata_contig14462:470..549Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14462 471..549 +
1691679185.653493-UTR-H-elongata_contig14462:470..5491691679185.653493-UTR-H-elongata_contig14462:470..549Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14462 471..549 +
1622929858.0047297-UTR-H-elongata_contig14462:3452..41271622929858.0047297-UTR-H-elongata_contig14462:3452..4127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14462 3453..4127 +
1691679185.7313595-UTR-H-elongata_contig14462:3452..41271691679185.7313595-UTR-H-elongata_contig14462:3452..4127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14462 3453..4127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.8775408-CDS-H-elongata_contig14462:549..8221622929857.8775408-CDS-H-elongata_contig14462:549..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 550..822 +
1691679185.663677-CDS-H-elongata_contig14462:549..8221691679185.663677-CDS-H-elongata_contig14462:549..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 550..822 +
1622929857.9056845-CDS-H-elongata_contig14462:1560..16091622929857.9056845-CDS-H-elongata_contig14462:1560..1609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 1561..1609 +
1691679185.6747139-CDS-H-elongata_contig14462:1560..16091691679185.6747139-CDS-H-elongata_contig14462:1560..1609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 1561..1609 +
1622929857.9375756-CDS-H-elongata_contig14462:1897..21261622929857.9375756-CDS-H-elongata_contig14462:1897..2126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 1898..2126 +
1691679185.683297-CDS-H-elongata_contig14462:1897..21261691679185.683297-CDS-H-elongata_contig14462:1897..2126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 1898..2126 +
1622929857.951171-CDS-H-elongata_contig14462:2303..24181622929857.951171-CDS-H-elongata_contig14462:2303..2418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 2304..2418 +
1691679185.6951752-CDS-H-elongata_contig14462:2303..24181691679185.6951752-CDS-H-elongata_contig14462:2303..2418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 2304..2418 +
1622929857.9715471-CDS-H-elongata_contig14462:2759..29171622929857.9715471-CDS-H-elongata_contig14462:2759..2917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 2760..2917 +
1691679185.7116446-CDS-H-elongata_contig14462:2759..29171691679185.7116446-CDS-H-elongata_contig14462:2759..2917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 2760..2917 +
1622929857.988677-CDS-H-elongata_contig14462:3262..34521622929857.988677-CDS-H-elongata_contig14462:3262..3452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 3263..3452 +
1691679185.72242-CDS-H-elongata_contig14462:3262..34521691679185.72242-CDS-H-elongata_contig14462:3262..3452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14462 3263..3452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14462.3062.1prot_H-elongata_contig14462.3062.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14462 550..3452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14462.3062.1

>prot_H-elongata_contig14462.3062.1 ID=prot_H-elongata_contig14462.3062.1|Name=mRNA_H-elongata_contig14462.3062.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=338bp
MILLEMSPTVVVEVAWPGSPRHPPPLPLCFVHCASYGTSSTRSRNRSSGN
LVCTRAPQVRAMVRNVDDFFPRKSDLGNGPIEVVLGDVLDKTSLAVAMED
CQSCIDCHRPHPLVQPRDLWTHPKKDEAKTHPYYVNYIGTKNLIEAAEKA
RVKRLVRITGLTCGLSAFNPFTYLLNLMASMTIKWQFECEKEIRAAAERG
LAYTVIRPGALTDKSRPKDACLMLACDGKPTPVLKARRMYTISRKEVADL
MVLAMQSKNAAGATLSCSWGRDKSGPKSWKSLMAKVRPDKSPLPKRNYRA
SMAFLGSITLAAALAVGSKVAIILNFVADQKRKSEFR*
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mRNA from alignment at H-elongata_contig14462:88..4127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14462.3062.1 ID=mRNA_H-elongata_contig14462.3062.1|Name=mRNA_H-elongata_contig14462.3062.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4040bp|location=Sequence derived from alignment at H-elongata_contig14462:88..4127+ (Himanthalia elongata Himel1 dioecious)
CTTGTGCACGATCACGATCACGTCTCCTTCCTGGCCTTCTCCTCAGGTGT
GCTTGAGACTCTCGAAACAAGGCTTCAAGGTGCGGCGTGAACATTCGAAG
AAGCGGTTGGCTGCCACTGTACAGCTGTATCGTTTTGCCTCCGTGAGGCC
GTGGTGTTGGAATCTGGCAGAGAGTTTCGCATGCGCAGTGTCCGCAGTTT
CATTTTCACAGTGAAGAACAAGCCATGCGAGCCTGTTGACGACAAGCTTG
CCGTTTCCCCCGGAGTAACAATGAATTGCACAGGCACGGCGAGTCGCTGG
TACTAATGAAGAATCACCTCAAGCTCAGTGGGAGATGGTGGCTAAGACCA
TACGTACCGACGGTTTTTCTGGAACTGCATGAGAACCGACATATAAAACA
TACCCATAGTAGTTGATGCACACCAACATCCCTATCCTCGTTCGATTAGC
TGCCCCGCGTCTATGATTCTATTAGAAATGTCGCCGACAGTCGTGGTAGA
AGTCGCCTGGCCGGGGTCCCCGCGCCACCCCCCCCCTCTCCCCCTCTGTT
TCGTACACTGCGCCTCTTACGGCACAAGTTCGACAAGGTCACGGAACCGC
TCCTCTGGCAACTTGGTTTGTACTCGAGCACCTCAGGTTCGAGCGATGGT
GAGGAACGTCGACGACTTTTTCCCCAGGAAGAGCGATCTAGGGAATGGAC
CGATCGAAGTCGTCCTCGGTGACGTCTTGGACAAGGTGAAGCGTGGCGGT
ACTCTTGTGGGCCCAGGAACCAGTATAAGTCCAATGCCGCCGCCGGCACG
GGATCCTTTTAGAGGACGAGCGATGGTGTGTACAGCGACTAGACACGTTT
CTCGCCAATCCAAGAACGAGCACGCTATGTCTCTATTTGGCGCTTAATGA
CTCTTGACACGACACACTCCAATTATCAAGCATTATTTTCACCTCTTCAC
GCGTTATTGTGGCAAGCACTGCCGTCAACCCTGACGGCAATCTAAAAAAA
CGATTAGGTCACGTCTTGGATGAAACATATTGTCGTTGTGATGCATTGCC
GCCAATACGCAACAACAGATATCCTGATCCAACTGAACCGCACCAAGCAT
GACAACCTCCTCTCCCAAAATATATGTAACATGAGCTCGATAAATATCAC
GGAGTGTTCTCCTTGTCGTCTCACATAAACACACACAGAGACTAGAAAGT
CGCGTGCGATGCGATGCGACCTATCCGCCTATTTCGTGCTGTATGTGGAC
ACTCCACCGTGGTCACGTCCTTACGCATGCTTGCTTTCAGAGAGGTAGGC
GTTCCCCTCCCGGTGACTCTTGACGCCTCCGCTCTCCTTGCAATGCAATT
GCATAACGTCACAGCATCGAAAATGAGCAGCTACGTCGCGCTAAACGCCA
TTTGTCCGCCGATCTTGCCTGATAACATTTCGCCTGTTTGTCCTGTTCTT
GCGTACACCTATCCCTCCCTCAGACCAGTTTGGCCGTTGCCATGGAAGAC
TGTCAGTCATGCATCGATTGTCAGTGAGTTAGTTACGAACCTAGGGAGTG
TTGTCGTGACCAGACGCGGCTTGCAGGATCGACGACGAATGCGCTCTGGC
TGGCTTTAGCAGATTTCTTAGAGGCAGTGGTAATATCCGCACTCGAGTTA
CGGACGCCGCGTAGCTAAGCCGGAAACCCTCTCGTAAGACCATTACGGTC
AGACGAGTTCTTCCGAACGCCACCTTCCTACAAGCCCTACCGTCGCAGTG
AAGTTGAAGTTCGAATCCCCCCGCCCCCCTTCCCCCCTCCTCAACTGACC
CCCCCCCCCAACCGCCCCCATCCCCTTGTGCAGCCAAGGGACCTCTGGAC
ACATCCAAAGAAAGACGAGGCCAAAACGCATCCATACTACGTTAACTACA
TCGGTACAAAAAACCTGATCGAGGCGGCAGAGAAGGCGAGGGTGAAGAGG
CTTGTACGCATCACGGGCCTCACCTGTGGTCTCTCCGCGTTCAACCCCTT
CACTTACTTGCTGAACCTGATGGCCTCGATGACGATCAAGTGAGGAAATT
TCTGCACCGGAGAGCGGGCGGGGGAAGAAGTGGTCGATCGGTGGGTCCGA
AGCACGCGCCAGGCTTCTCTTCGCTGCTTGTTTTTGACACGGACGCTGTA
AGGCACCGCTTCGGCTGTTGAGGGTGACACGGTTTGATTTTATTTGATTT
GATGTGATCTGATCAGGTGGCAGTTCGAATGCGAGAAAGAGATACGAGCA
GCCGCTGAAAGGGGGCTGGCGTACACAGTGATCAGGCCTGGGGCGCTCAC
AGACAAGTCGCGGCCAAAGGACGCGTGTCTGGTGAGGAGGGGATAAACTG
AAGGTAGACTAGGCGGTTTTCCCGCCCCCGGTCCCATACCCCATATATTA
AAAAATACCCCCACCCCCTCCCTCAAGATGCCGTTACGGAGGAGTTATAC
CTGACGGCGATCTTTCGAGTCTTTCGAGCACCCCCGCCGGAGAAATTTGC
ATTATGTGCCTCATCATTCCGTAGGCGCGCGTGGCTGCTGCACCACCTGA
GCCTAGCCTCGTTCGAGATTGGGTGATTACACTCTTGCTACCATTACTTC
AGCGTGGGCTTTTATTGCTTTTAATGTTTCAAATGCGAGCGTTTTTTCCC
GCCTGTTTCTGGCGCAACTCAGATGCTTGCGTGCGATGGGAAGCCTACGC
CCGTGCTGAAGGCTCGGCGGATGTACACGATTTCTCGGAAGGAGGTGGCC
GACCTGATGGTTTTGGCGATGCAGAGCAAGAACGCGGCCGGGGCGACGCT
CTCATGCTCCTGGGGGAGAGACAAGAGCGGGTGAGCCAGCGCGTCCCGAG
ACCTCGGAAGCCATCAACACTCTTGGTTTTTGTATGATGTTTTTAGCCTG
TAGAGATATGCTGCTCAGTGGCGCTGTGTGGCCCACGGCAGCCCTCCTCG
ATTTCTCGATTGCGCTCCTTTGGTATGTCTCGTCAATGTCGAGTACGCTT
GAGTTACCAACGCTTGCGCGTCACCCCTAGCCATCTCAGCAAGCTGCTCT
CCCCCTCCCCTCTACGCGATTCCCTCGTGGTTGAGAGCAAGAGTGGCGAT
AGCATGAAACCGCAGATGCGCGAATGCTCTATTCACCCCTCTATTCCGGC
TCTTACGCATAATGCCCTTTTACAGGCCGAAGAGCTGGAAAAGCCTAATG
GCCAAGGTTCGGCCGGACAAGTCGCCGTTGCCAAAGAGGAACTACCGAGC
GTCTATGGCGTTCCTGGGAAGCATCACCTTGGCCGCCGCTCTCGCGGTGG
GATCGAAGGTGGCCATCATCTTGAACTTCGTCGCGGACCAGAAACGAAAA
AGCGAGTTCAGGTAGACACGGGCGTGGGTTGTGACCCTCGCGCGGACGCC
TTCCTCGCGTTTCTAGTGGTGCTCTATTTTGCGGAATGGAAAAGGACTTG
GATCCTTTCGGTCGTGGTATGGCGAATGGAAAAGTTCGAATCATGTCAAA
CACCAAGATCGTAACGGCGCGTCGGTGGACTCGTTGAAATGAAGCGGCGC
TCATAAAACATTCGCGGAGAGCGGTCTCCCGGGCAGAGAGATGGCTTGAG
ACCGAACACAGGGGACGAAAGAGAGGAGCGTACTTCCATGTCAAAGGCCC
CTAGAAATATGATCTTTTAGAATCATCCGAGCGGGAGAAGGTCGCAAAGC
GGGTTTCTTCGGCACCAACCGGTCCGATTGGTTCAGGTGTTTGTCGAGTT
CGCGTCCACTACGTCGCTGAAGGCGTGAGGTTTTGACGGGTTTCGGAAGC
CCAATAGTGAGGCTCTGAGGCATGATGTAGGAGAGGTCGCGATTCGCCAC
TCGACATAGACCAACACCAAAATGCTACTTTCCTTTTCGAATACGGATAT
ATCACACTCATGGGGAGCGGCAAGGTGCATAACCTGATTCTTCGATTCTT
CCGTGGAAACGACTCGACTCCGTGGACAGTCGAGCTAAGTTACGGCTGAA
GCTTTTAATGGGAGCTAGGGGTTGGAGGTATATAGAAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig14462:88..4127+

>mRNA_H-elongata_contig14462.3062.1 ID=mRNA_H-elongata_contig14462.3062.1|Name=mRNA_H-elongata_contig14462.3062.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2028bp|location=Sequence derived from alignment at H-elongata_contig14462:88..4127+ (Himanthalia elongata Himel1 dioecious)
ATGATTCTATTAGAAATGTCGCCGACAGTCGTGGTAGAAGTCGCCTGGCC
GGGGTCCCCGCGCCACCCCCCCCCTCTCCCCCTCTGTTTCGTACACTGCG
CCTCTTACGGCACAAGTTCGACAAGGTCACGGAACCGCTCCTCTGGCAAC
TTGGTTTGTACTCGAGCACCTCAGGTTCGAGCGATGGTGAGGAACGTCGA
CGACTTTTTCCCCAGGAAGAGCGATCTAGGGAATGGACCGATCGAAGTCG
TCCTCGGTGACGTCTTGGACAAGATGATTCTATTAGAAATGTCGCCGACA
GTCGTGGTAGAAGTCGCCTGGCCGGGGTCCCCGCGCCACCCCCCCCCTCT
CCCCCTCTGTTTCGTACACTGCGCCTCTTACGGCACAAGTTCGACAAGGT
CACGGAACCGCTCCTCTGGCAACTTGGTTTGTACTCGAGCACCTCAGGTT
CGAGCGATGGTGAGGAACGTCGACGACTTTTTCCCCAGGAAGAGCGATCT
AGGGAATGGACCGATCGAAGTCGTCCTCGGTGACGTCTTGGACAAGACCA
GTTTGGCCGTTGCCATGGAAGACTGTCAGTCATGCATCGATTGTCACCAG
TTTGGCCGTTGCCATGGAAGACTGTCAGTCATGCATCGATTGTCACCGCC
CCCATCCCCTTGTGCAGCCAAGGGACCTCTGGACACATCCAAAGAAAGAC
GAGGCCAAAACGCATCCATACTACGTTAACTACATCGGTACAAAAAACCT
GATCGAGGCGGCAGAGAAGGCGAGGGTGAAGAGGCTTGTACGCATCACGG
GCCTCACCTGTGGTCTCTCCGCGTTCAACCCCTTCACTTACTTGCTGAAC
CTGATGGCCTCGATGACGATCAAACCGCCCCCATCCCCTTGTGCAGCCAA
GGGACCTCTGGACACATCCAAAGAAAGACGAGGCCAAAACGCATCCATAC
TACGTTAACTACATCGGTACAAAAAACCTGATCGAGGCGGCAGAGAAGGC
GAGGGTGAAGAGGCTTGTACGCATCACGGGCCTCACCTGTGGTCTCTCCG
CGTTCAACCCCTTCACTTACTTGCTGAACCTGATGGCCTCGATGACGATC
AAGTGGCAGTTCGAATGCGAGAAAGAGATACGAGCAGCCGCTGAAAGGGG
GCTGGCGTACACAGTGATCAGGCCTGGGGCGCTCACAGACAAGTCGCGGC
CAAAGGACGCGTGTCTGGTGGCAGTTCGAATGCGAGAAAGAGATACGAGC
AGCCGCTGAAAGGGGGCTGGCGTACACAGTGATCAGGCCTGGGGCGCTCA
CAGACAAGTCGCGGCCAAAGGACGCGTGTCTGATGCTTGCGTGCGATGGG
AAGCCTACGCCCGTGCTGAAGGCTCGGCGGATGTACACGATTTCTCGGAA
GGAGGTGGCCGACCTGATGGTTTTGGCGATGCAGAGCAAGAACGCGGCCG
GGGCGACGCTCTCATGCTCCTGGGGGAGAGACAAGAGCGGATGCTTGCGT
GCGATGGGAAGCCTACGCCCGTGCTGAAGGCTCGGCGGATGTACACGATT
TCTCGGAAGGAGGTGGCCGACCTGATGGTTTTGGCGATGCAGAGCAAGAA
CGCGGCCGGGGCGACGCTCTCATGCTCCTGGGGGAGAGACAAGAGCGGGC
CGAAGAGCTGGAAAAGCCTAATGGCCAAGGTTCGGCCGGACAAGTCGCCG
TTGCCAAAGAGGAACTACCGAGCGTCTATGGCGTTCCTGGGAAGCATCAC
CTTGGCCGCCGCTCTCGCGGTGGGATCGAAGGTGGCCATCATCTTGAACT
TCGTCGCGGACCAGAAACGAAAAAGCGAGTTCAGGTAGGCCGAAGAGCTG
GAAAAGCCTAATGGCCAAGGTTCGGCCGGACAAGTCGCCGTTGCCAAAGA
GGAACTACCGAGCGTCTATGGCGTTCCTGGGAAGCATCACCTTGGCCGCC
GCTCTCGCGGTGGGATCGAAGGTGGCCATCATCTTGAACTTCGTCGCGGA
CCAGAAACGAAAAAGCGAGTTCAGGTAG
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