mRNA_H-elongata_contig103692.306.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103692.306.1
Unique NamemRNA_H-elongata_contig103692.306.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: D8LAZ6_ECTSI (RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ6_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 3.600e-44
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 1
Query:   10 SAEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
            +AEKAQY+ LDCEMVGVGP GCRSALA CC+VDWDG  I+DK+V P ERVTDFRTFVSGV+A  L GG+ LRQCQ E+AAI+K+K +VGHAL NDLK
Sbjct:  267 AAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGDTIYDKHVTPNERVTDFRTFVSGVKANHLKGGVRLRQCQEEVAAILKDKVLVGHALTNDLK 363          
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: W7U6T2_9STRA (RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6T2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.030e-34
Identity = 59/101 (58.42%), Postives = 81/101 (80.20%), Query Frame = 1
Query:    1 DVPSAEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLKV 303
            D+   EK+ Y+GLDCEMVGVG  G RSALA   +VD+DG++I+D++V P ER+TDFRT+VSGV+AK L   LSL++C +++A ++K K IVGHAL+NDL+V
Sbjct:   93 DMTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQV 193          
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A836CG98_9STRA (RNA exonuclease 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG98_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.550e-31
Identity = 59/101 (58.42%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    7 PSAEKA-QYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGG--LSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
            PS E   QY+ LDCEMVG G +G  SALA CC+ DW G  ++  YV P ERVTDFRTFVSG+RA  L G   ++L +CQ  +AAI K + IVGHAL NDLK
Sbjct:   39 PSPEVCEQYVALDCEMVGTGVSGRHSALAQCCITDWHGNTLYCSYVRPPERVTDFRTFVSGIRATHLKGADAVTLLECQKAVAAITKGRIIVGHALHNDLK 139          
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A1V9YXD8_9STRA (RNA exonuclease 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXD8_9STRA)

HSP 1 Score: 117 bits (292), Expect = 8.650e-30
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 1
Query:   16 EKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
            + +  + +DCEMVGVG +G RS LA C +VD+DG +++DK+V P ERVTDFRT VSG+R+K L   +   QCQ E+A I ++K +VGHAL+ND++
Sbjct:   61 DTSTIVAMDCEMVGVGSDGARSVLARCSIVDFDGNVVYDKHVKPMERVTDFRTHVSGIRSKHLRDAIPFTQCQQEVAEIFEDKILVGHALRNDMQ 155          
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A067BGR3_SAPPC (RNA exonuclease 4 (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BGR3_SAPPC)

HSP 1 Score: 114 bits (286), Expect = 1.470e-29
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 1
Query:   31 IGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
            + +DCEMVGVG +G RS LA C +VD+DG +++D++V P ERVTDFRT VSG+RAK L   L   QCQ ++AAI   K +VGHA++ND++
Sbjct:   73 VAMDCEMVGVGSDGKRSVLARCSIVDFDGNVVYDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQ 162          
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A024UI79_9STRA (RNA exonuclease 4 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI79_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.810e-29
Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 1
Query:   16 EKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
            +    + +DCEMVGVG  G RS LA C +VD+DG +++D++V P E+VTDFRT VSG+R+K L   +   +CQ+++AAI+K+K +VGHA++NDL+
Sbjct:   84 DTTSIVAMDCEMVGVGVGGTRSVLARCSIVDFDGNVVYDEHVKPLEKVTDFRTHVSGIRSKSLRKAIPFAKCQVDVAAILKDKILVGHAVRNDLQ 178          
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A7S1YYA6_TRICV (RNA exonuclease 4 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YYA6_TRICV)

HSP 1 Score: 114 bits (285), Expect = 2.450e-29
Identity = 50/98 (51.02%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    4 VPSAEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDL 297
            VP  E+++Y+ +DCEMVG+G  G  SALA   +VDWDGK++ D +V   +RVTDFRT+VSGVR+KD+   +    C+ ++A I+K K +VGH+L+NDL
Sbjct:   61 VPEPERSRYVAVDCEMVGIGSAGRTSALARTSLVDWDGKVLLDTFVRVPDRVTDFRTWVSGVRSKDIRNAMEPEDCREKVAEILKGKVLVGHSLKNDL 158          
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A316U9R8_9BASI (RNA exonuclease 4 n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U9R8_9BASI)

HSP 1 Score: 117 bits (294), Expect = 2.890e-29
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1
Query:   16 EKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
            E  Q+I +DCEMVGVG  G  S LA   +V+W G ++ D++V P E+VTD+RT+VSGVRAKDL G  S ++ Q E+AA++K + +VGHA+QNDLK
Sbjct:  166 EPGQFIAIDCEMVGVGEKGSESVLARVSIVNWHGHVLMDRFVKPMEKVTDYRTWVSGVRAKDLQGAPSFKEVQAEVAALVKGRVLVGHAIQNDLK 260          
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A6G0X6W8_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6W8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.550e-29
Identity = 48/95 (50.53%), Postives = 73/95 (76.84%), Query Frame = 1
Query:   16 EKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
            + ++ + +DCEMVGVG +G RS LA C +VD+DG +++D++V P E+VTDFRT VSG+R+K L   +   +CQ ++ AI+K+K +VGHAL+NDL+
Sbjct:   72 DTSKIVAMDCEMVGVGLSGTRSVLARCSIVDFDGNVVYDEHVKPMEKVTDFRTHVSGIRSKSLRNAIPFPKCQQDVGAILKDKILVGHALRNDLQ 166          
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match: A0A316VDZ4_9BASI (RNA exonuclease 4 n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316VDZ4_9BASI)

HSP 1 Score: 116 bits (290), Expect = 5.940e-29
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 1
Query:   13 AEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDL 297
            AE   YI +DCEMVGVGPNG  S LA C +V+W G ++ D +V P E+VTD+RT+VSGVRAKDL G     + Q ++A ++K + +VGHAL NDL
Sbjct:  149 AEAGTYIAMDCEMVGVGPNGSESVLARCSIVNWHGAVLLDTFVRPQEKVTDYRTWVSGVRAKDLKGAPQFAEVQEKVANLIKGRILVGHALHNDL 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAZ6_ECTSI3.600e-4474.23RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus T... [more]
W7U6T2_9STRA5.030e-3458.42RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A836CG98_9STRA6.550e-3158.42RNA exonuclease 4 n=1 Tax=Tribonema minus TaxID=30... [more]
A0A1V9YXD8_9STRA8.650e-3052.63RNA exonuclease 4 n=1 Tax=Thraustotheca clavata Ta... [more]
A0A067BGR3_SAPPC1.470e-2955.56RNA exonuclease 4 (Fragment) n=1 Tax=Saprolegnia p... [more]
A0A024UI79_9STRA1.810e-2950.53RNA exonuclease 4 n=2 Tax=Aphanomyces invadans Tax... [more]
A0A7S1YYA6_TRICV2.450e-2951.02RNA exonuclease 4 (Fragment) n=1 Tax=Trieres chine... [more]
A0A316U9R8_9BASI2.890e-2954.74RNA exonuclease 4 n=1 Tax=Pseudomicrostroma glucos... [more]
A0A6G0X6W8_9STRA5.550e-2950.53RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches Ta... [more]
A0A316VDZ4_9BASI5.940e-2954.74RNA exonuclease 4 n=1 Tax=Meira miltonrushii TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103692contigH-elongata_contig103692:54..800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue1.5e-36
Seed eggNOG ortholog2880.D8LAZ6
KEGG koko:K18327
EggNOG free text desc.exonuclease activity
EggNOG OGsCOG0847@1,KOG2249@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExonuclease
Ec32 orthologEc-27_005830.1
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.7263155-CDS-H-elongata_contig103692:53..2401622929571.7263155-CDS-H-elongata_contig103692:53..240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103692 54..240 -
1691679075.4540884-CDS-H-elongata_contig103692:53..2401691679075.4540884-CDS-H-elongata_contig103692:53..240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103692 54..240 -
1622929571.7488477-CDS-H-elongata_contig103692:675..8001622929571.7488477-CDS-H-elongata_contig103692:675..800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103692 676..800 -
1691679075.4631402-CDS-H-elongata_contig103692:675..8001691679075.4631402-CDS-H-elongata_contig103692:675..800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103692 676..800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103692.306.1prot_H-elongata_contig103692.306.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103692 54..800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103692.306.1

>prot_H-elongata_contig103692.306.1 ID=prot_H-elongata_contig103692.306.1|Name=mRNA_H-elongata_contig103692.306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
DVPSAEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPA
ERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK
VQY*
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mRNA from alignment at H-elongata_contig103692:54..800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103692.306.1 ID=mRNA_H-elongata_contig103692.306.1|Name=mRNA_H-elongata_contig103692.306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at H-elongata_contig103692:54..800- (Himanthalia elongata Himel1 dioecious)
GATGTGCCCTCCGCTGAGAAGGCTCAGTACATCGGGCTGGACTGCGAAAT GGTGGGCGTCGGACCAAACGGCTGCCGCAGCGCCCTAGCGTGGTGCTGCG TGGTGGATTGGGACGGCAAAATAATGTTAGTACTGCAGAGCCCAAGTGTT TTAGTTTTACGTTGGGAAGGCGAAGTAGCGAGTTAGATTCATGGCCGACT CCCGCTCGCGTCGTCGTAGTCCTCATTCACCAGGAGCACCGGTGCTGTGA CGCTCGCATAGTGGACCATCAGCACCAAAACCCGAAACCCTTATGGGCGC CCCTACAGAAGTACCCTTTCAACCAGCGCTGTTCGATATTAAACGTGAGA TGGTCTCTCGTACAAACTAAAACTCCAACGAGAATATATCAAAGATGTAT GGATTGGGGAACAAACCAACCTGTGGCCTACCCATAGGTATATCCCCGAA ATTTTCTTTCGAGATGGGATTTTTACTCAAATCTTCAGGCCGCTCTCGCT GTACAGCCCCTTTTATCGCCCCCCCCCGTTTCTCCAAATGCTTGTCTCTG TGTGGCACAGATTCGACAAGTACGTTAACCCAGCCGAACGTGTAACGGAT TTCCGAACTTTCGTGAGCGGTGTGCGGGCCAAGGACCTCATTGGGGGCCT CTCTCTCCGCCAGTGCCAGATAGAGATTGCGGCGATCATGAAGGAGAAAT ATATAGTAGGCCATGCCTTACAAAACGATCTCAAGGTACAGTATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig103692:54..800-

>mRNA_H-elongata_contig103692.306.1 ID=mRNA_H-elongata_contig103692.306.1|Name=mRNA_H-elongata_contig103692.306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig103692:54..800- (Himanthalia elongata Himel1 dioecious)
GATGTGCCCTCCGCTGAGAAGGCTCAGTACATCGGGCTGGACTGCGAAAT
GGTGGGCGTCGGACCAAACGGCTGCCGCAGCGCCCTAGCGTGGTGCTGCG
TGGTGGATTGGGACGGCAAAATAATGATGTGCCCTCCGCTGAGAAGGCTC
AGTACATCGGGCTGGACTGCGAAATGGTGGGCGTCGGACCAAACGGCTGC
CGCAGCGCCCTAGCGTGGTGCTGCGTGGTGGATTGGGACGGCAAAATAAT
ATTCGACAAGTACGTTAACCCAGCCGAACGTGTAACGGATTTCCGAACTT
TCGTGAGCGGTGTGCGGGCCAAGGACCTCATTGGGGGCCTCTCTCTCCGC
CAGTGCCAGATAGAGATTGCGGCGATCATGAAGGAGAAATATATAGTAGG
CCATGCCTTACAAAACGATCTCAAGGTACAGTATTAAATTCGACAAGTAC
GTTAACCCAGCCGAACGTGTAACGGATTTCCGAACTTTCGTGAGCGGTGT
GCGGGCCAAGGACCTCATTGGGGGCCTCTCTCTCCGCCAGTGCCAGATAG
AGATTGCGGCGATCATGAAGGAGAAATATATAGTAGGCCATGCCTTACAA
AACGATCTCAAGGTACAGTATTAA
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