mRNA_H-elongata_contig144427.3050.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144427.3050.1
Unique NamemRNA_H-elongata_contig144427.3050.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144427.3050.1 vs. uniprot
Match: A0A6H5JR07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR07_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 9.630e-19
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 GHMSVKDASVLAWSYGALGLRPPRLFGTLAREGLLMLHEATAHDLSNLAWGLARAG 168
            GHM+ KDAS+LAW+YG LGLRP R+   L REGL  + EAT HDLSNLAWGLA+AG
Sbjct:  475 GHMAAKDASILAWAYGMLGLRPSRVIEALTREGLATVQEATPHDLSNLAWGLAKAG 530
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BLAST of mRNA_H-elongata_contig144427.3050.1 vs. uniprot
Match: D7FYY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY5_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.170e-17
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 GHMSVKDASVLAWSYGALGLRPPRLFGTLAREGLLMLHEATAHDLSNLAWGLARAG 168
            G M+ KDAS+LAW+YG LGLRP R+   L REGL  + EAT HDLSNLAWGLA+AG
Sbjct:  590 GRMAAKDASILAWAYGMLGLRPARVIEALTREGLATVQEATPHDLSNLAWGLAKAG 645
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BLAST of mRNA_H-elongata_contig144427.3050.1 vs. uniprot
Match: A0A813I5X4_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I5X4_POLGL)

HSP 1 Score: 49.7 bits (117), Expect = 1.910e-5
Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 1 
Query:   19 DASVLAWSYGALGLRPPRLFGTLAREGLLMLHEATAHDLSNLAWGLARAGV 171
            + S++AWS+G LG+  P LF  L  + +  L   T  DL  LAWG A +GV
Sbjct:  594 ELSIIAWSFGMLGVNNPTLFQALVIQAVPQLESFTMRDLLKLAWGFAASGV 644
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144427.3050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JR07_9PHAE9.630e-1969.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY5_ECTSI1.170e-1767.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A813I5X4_POLGL1.910e-543.14Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144427contigH-elongata_contig144427:715..885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002960.1
Exons1
Model size171
Cds size165
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.5826337-UTR-H-elongata_contig144427:714..7201622929856.5826337-UTR-H-elongata_contig144427:714..720Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144427 715..720 +
1691679185.076458-UTR-H-elongata_contig144427:714..7201691679185.076458-UTR-H-elongata_contig144427:714..720Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144427 715..720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.5958045-CDS-H-elongata_contig144427:720..8851622929856.5958045-CDS-H-elongata_contig144427:720..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144427 721..885 +
1691679185.0858178-CDS-H-elongata_contig144427:720..8851691679185.0858178-CDS-H-elongata_contig144427:720..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144427 721..885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144427.3050.1prot_H-elongata_contig144427.3050.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144427 721..885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144427.3050.1

>prot_H-elongata_contig144427.3050.1 ID=prot_H-elongata_contig144427.3050.1|Name=mRNA_H-elongata_contig144427.3050.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MSVKDASVLAWSYGALGLRPPRLFGTLAREGLLMLHEATAHDLSNLAWGL
ARAGV
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mRNA from alignment at H-elongata_contig144427:715..885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144427.3050.1 ID=mRNA_H-elongata_contig144427.3050.1|Name=mRNA_H-elongata_contig144427.3050.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig144427:715..885+ (Himanthalia elongata Himel1 dioecious)
GGCCATATGTCCGTCAAGGACGCCTCTGTATTGGCCTGGTCTTACGGGGC
GCTGGGGCTGCGCCCGCCAAGGCTCTTTGGGACCCTCGCCCGAGAGGGTC
TGTTGATGTTGCACGAGGCGACTGCGCACGATCTGTCCAACCTGGCCTGG
GGACTGGCGCGGGCGGGAGTC
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Coding sequence (CDS) from alignment at H-elongata_contig144427:715..885+

>mRNA_H-elongata_contig144427.3050.1 ID=mRNA_H-elongata_contig144427.3050.1|Name=mRNA_H-elongata_contig144427.3050.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig144427:715..885+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGTCAAGGACGCCTCTGTATTGGCCTGGTCTTACGGGGCGCTGGG
GCTGCGCCCGCCAAGGCTCTTTGGGACCCTCGCCCGAGAGGGTCTGTTGA
TGTTGCACGAGGCGACTGCGCACGATCTGTCCAACCTGGCCTGGGGACTG
GCGCGGGCGGGAGTCATGTCCGTCAAGGACGCCTCTGTATTGGCCTGGTC
TTACGGGGCGCTGGGGCTGCGCCCGCCAAGGCTCTTTGGGACCCTCGCCC
GAGAGGGTCTGTTGATGTTGCACGAGGCGACTGCGCACGATCTGTCCAAC
CTGGCCTGGGGACTGGCGCGGGCGGGAGTC
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