mRNA_H-elongata_contig144404.3049.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144404.3049.1
Unique NamemRNA_H-elongata_contig144404.3049.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144404.3049.1 vs. uniprot
Match: D8LL50_ECTSI (zf-NOSIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL50_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.520e-29
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 RLGRDSQMTFGHCCLCVHPAVEPMATPSGHIYCKECIVEFLLAKTQELKRQREAFEAQ 174
            RLG DSQ TFGHC LC+HPAVEPMATPSGH+YCKECIVEFLL KTQELKRQREAFEAQ
Sbjct:   35 RLGGDSQQTFGHCSLCIHPAVEPMATPSGHVYCKECIVEFLLTKTQELKRQREAFEAQ 92
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BLAST of mRNA_H-elongata_contig144404.3049.1 vs. uniprot
Match: A0A836CI14_9STRA (zf-NOSIP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI14_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.230e-19
Identity = 39/62 (62.90%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 RLGRDSQMTFGHCCLCVHPAVEPMATPSGHIYCKECIVEFLLAKTQELKRQREAFEAQAESE 186
            R+G DSQ+ FG+C +C+  A EPMATPSGHIYC+ECI+E+LL KT++LKRQR A+EAQ +++
Sbjct:   28 RVGVDSQLPFGNCAMCLRLAKEPMATPSGHIYCRECILEYLLVKTKDLKRQRAAYEAQQQAQ 89
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BLAST of mRNA_H-elongata_contig144404.3049.1 vs. uniprot
Match: A0A7S0XMA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0XMA4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.070e-17
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 RLGRDSQMTFGHCCLCVHPAVEPMATPSGHIYCKECIVEFLLAKTQELKRQREAFEAQ 174
            RLG+D+Q+ FGHC L + PAV+P+ TPSGHIY +E I+E L+AKT ELKR REA+EA+
Sbjct:   39 RLGKDAQLPFGHCALSLQPAVDPVVTPSGHIYSREAILEHLVAKTAELKRAREAWEAE 96
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BLAST of mRNA_H-elongata_contig144404.3049.1 vs. uniprot
Match: A0A7S3YKU4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKU4_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 3.120e-17
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 RLGRDSQMTFGHCCLCVHPAVEPMATPSGHIYCKECIVEFLLAKTQELKRQREAFEA 171
            R G DSQ  FG+C LC+    +PMA+PSGH+YCKECI ++L+ +T+ELKRQR  +EA
Sbjct:   31 RFGADSQQPFGNCYLCLQRVRDPMASPSGHLYCKECIFQYLMTRTKELKRQRRRYEA 87
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BLAST of mRNA_H-elongata_contig144404.3049.1 vs. uniprot
Match: K8YSP8_NANGC (Nitric oxide synthase interacting protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSP8_NANGC)

HSP 1 Score: 80.9 bits (198), Expect = 5.070e-17
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 RLGRDSQMTFGHCCLCVHPAVEPMATPSGHIYCKECIVEFLLAKTQELKRQREAFEAQAESE 186
            R+G DSQ  FG+CCL + P  +P+ +PSGHIY +E IVE+LL+KTQ+LKRQR  +E Q E E
Sbjct:   31 RIGTDSQQPFGYCCLTLKPVTDPVVSPSGHIYSREAIVEYLLSKTQDLKRQRVLYEQQREEE 92
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BLAST of mRNA_H-elongata_contig144404.3049.1 vs. uniprot
Match: A0A4D9D4L9_9STRA (zf-NOSIP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4L9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.080e-16
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 RLGRDSQMTFGHCCLCVHPAVEPMATPSGHIYCKECIVEFLLAKTQELKRQREAFEAQAESE 186
            R+G DSQ  FG+CCL + P  +P+ +PSGHIY +E IVE+LL+KTQ+LKRQR  +E Q E E
Sbjct:   31 RIGTDSQQPFGYCCLTLKPVTDPVVSPSGHIYSREAIVEYLLSKTQDLKRQRVLYEQQREEE 92
[Close]
BLAST of mRNA_H-elongata_contig144404.3049.1 vs. uniprot
Match: W7T0X4_9STRA (Nitric oxide synthase-interacting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0X4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.580e-15
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 RLGRDSQMTFGHCCLCVHPAVEPMATPSGHIYCKECIVEFLLAKTQELKRQREAFEAQ 174
            R+G DSQ  FG+CCL + P  +P+ +PSGHIY +E IVE+LL+KTQ+LKRQR  +E Q
Sbjct:   71 RIGTDSQQPFGYCCLTLRPVTDPVVSPSGHIYSREAIVEYLLSKTQDLKRQRVLYEQQ 128
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BLAST of mRNA_H-elongata_contig144404.3049.1 vs. uniprot
Match: A0A482RTA9_9ARCH (zf-NOSIP domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTA9_9ARCH)

HSP 1 Score: 70.5 bits (171), Expect = 5.580e-14
Identity = 32/58 (55.17%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 RLGRDSQMTFGHCCLCVHPAVEPMATPSGHIYCKECIVEFLLAKTQELKRQREAFEAQ 174
            RLG DSQ+ FG+C L + P+VEP+ TPSG IY +E ++E+LLAK++ELK+ +  +EAQ
Sbjct:   21 RLGTDSQLPFGYCSLSLQPSVEPVVTPSGRIYSRESMLEYLLAKSKELKQAQIEYEAQ 78
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BLAST of mRNA_H-elongata_contig144404.3049.1 vs. uniprot
Match: F0XZI5_AURAN (zf-NOSIP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZI5_AURAN)

HSP 1 Score: 72.8 bits (177), Expect = 1.010e-13
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    1 RLGRDSQMTFGHCCLCVHPAVEPMATPSGHIYCKECIVEFLLAKTQELKRQREAFEAQAESEGR 192
            R G DSQ+ FG C L + PAV+P+ATPSGH+Y +E I+E L+ K  ELKR RE +EA+  ++ R
Sbjct:    7 RCGSDSQLPFGWCALSLRPAVDPVATPSGHVYSREAILEHLVTKQAELKRARELWEAEQAADAR 70
[Close]
BLAST of mRNA_H-elongata_contig144404.3049.1 vs. uniprot
Match: A0A7S2SML4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SML4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.220e-13
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 RLGRDSQMTFGHCCLCVHPAVEPMATPSGHIYCKECIVEFLLAKTQELKRQREAFEAQ 174
            R G DSQ++FG+CCL + P  +P+ TPSGH+Y +E ++E+LL K QE KRQ+  FEAQ
Sbjct:   21 RFGVDSQLSFGYCCLSLTPVKDPVVTPSGHMYSREYMLEYLLTKKQEAKRQQALFEAQ 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144404.3049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL50_ECTSI5.520e-2989.66zf-NOSIP domain-containing protein n=2 Tax=Ectocar... [more]
A0A836CI14_9STRA1.230e-1962.90zf-NOSIP domain-containing protein (Fragment) n=1 ... [more]
A0A7S0XMA4_9STRA3.070e-1763.79Hypothetical protein (Fragment) n=1 Tax=Chrysocyst... [more]
A0A7S3YKU4_HETAK3.120e-1757.89Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K8YSP8_NANGC5.070e-1758.06Nitric oxide synthase interacting protein (Fragmen... [more]
A0A4D9D4L9_9STRA3.080e-1658.06zf-NOSIP domain-containing protein n=1 Tax=Nannoch... [more]
W7T0X4_9STRA1.580e-1558.62Nitric oxide synthase-interacting protein n=1 Tax=... [more]
A0A482RTA9_9ARCH5.580e-1455.17zf-NOSIP domain-containing protein n=1 Tax=archaeo... [more]
F0XZI5_AURAN1.010e-1353.13zf-NOSIP domain-containing protein n=1 Tax=Aureoco... [more]
A0A7S2SML4_9STRA1.220e-1355.17Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144404contigH-elongata_contig144404:404..607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue3.3e-20
Seed eggNOG ortholog2880.D8LL50
Preferred nameNOSIP
KEGG koko:K12857,ko:K13125
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000139,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009791,GO:0009892,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0016567,GO:0016604,GO:0016607,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0031090,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032768,GO:0032769,GO:0034641,GO:0036211,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0050999,GO:0051001,GO:0051341,GO:0051354,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0090304,GO:0097159,GO:0098588,GO:0098791,GO:0140096,GO:1901360,GO:1901363,GO:1901564
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsKOG3039@1,KOG3039@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size183
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.4950273-UTR-H-elongata_contig144404:403..4241622929856.4950273-UTR-H-elongata_contig144404:403..424Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144404 404..424 +
1691679185.0435138-UTR-H-elongata_contig144404:403..4241691679185.0435138-UTR-H-elongata_contig144404:403..424Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144404 404..424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.5147057-CDS-H-elongata_contig144404:424..6071622929856.5147057-CDS-H-elongata_contig144404:424..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144404 425..607 +
1691679185.063014-CDS-H-elongata_contig144404:424..6071691679185.063014-CDS-H-elongata_contig144404:424..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144404 425..607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144404.3049.1prot_H-elongata_contig144404.3049.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144404 425..607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144404.3049.1

>prot_H-elongata_contig144404.3049.1 ID=prot_H-elongata_contig144404.3049.1|Name=mRNA_H-elongata_contig144404.3049.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MTFGHCCLCVHPAVEPMATPSGHIYCKECIVEFLLAKTQELKRQREAFEA
QAESEGRYNI*
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mRNA from alignment at H-elongata_contig144404:404..607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144404.3049.1 ID=mRNA_H-elongata_contig144404.3049.1|Name=mRNA_H-elongata_contig144404.3049.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig144404:404..607+ (Himanthalia elongata Himel1 dioecious)
CGACTTGGCAGAGACTCGCAGATGACGTTTGGGCACTGCTGCCTCTGCGT
GCACCCAGCGGTAGAGCCGATGGCGACGCCGTCAGGTCACATATACTGCA
AAGAGTGCATCGTGGAATTCCTCCTGGCCAAGACACAGGAGCTCAAGCGC
CAAAGAGAGGCCTTCGAAGCTCAGGCGGAGAGCGAAGGTCGGTATAATAT
TTAA
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Coding sequence (CDS) from alignment at H-elongata_contig144404:404..607+

>mRNA_H-elongata_contig144404.3049.1 ID=mRNA_H-elongata_contig144404.3049.1|Name=mRNA_H-elongata_contig144404.3049.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig144404:404..607+ (Himanthalia elongata Himel1 dioecious)
ATGACGTTTGGGCACTGCTGCCTCTGCGTGCACCCAGCGGTAGAGCCGAT
GGCGACGCCGTCAGGTCACATATACTGCAAAGAGTGCATCGTGGAATTCC
TCCTGGCCAAGACACAGGAGCTCAAGCGCCAAAGAGAGGCCTTCGAAGCT
CAGGCGGAGAGCGAAGGTCGGTATAATATTTAAATGACGTTTGGGCACTG
CTGCCTCTGCGTGCACCCAGCGGTAGAGCCGATGGCGACGCCGTCAGGTC
ACATATACTGCAAAGAGTGCATCGTGGAATTCCTCCTGGCCAAGACACAG
GAGCTCAAGCGCCAAAGAGAGGCCTTCGAAGCTCAGGCGGAGAGCGAAGG
TCGGTATAATATTTAA
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