prot_H-elongata_contig14431.3043.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14431.3043.1
Unique Nameprot_H-elongata_contig14431.3043.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length59
Homology
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BLAST of mRNA_H-elongata_contig14431.3043.1 vs. uniprot
Match: D8LFL1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFL1_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.320e-20
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 0 
Query:    1 MGEDRLEFPKCVTSSSAEGRTWFARGWLHVLNFNHEEGIECFKECLRVDDTCLMALWGI 59
            MGE  L FP+ +T S+  GR WFARGW+H+LN+NHEE  ECFK C  VD  C MA WGI
Sbjct:   20 MGEGNLRFPQIITVSTDAGRAWFARGWMHMLNYNHEEAAECFKTCTEVDPRCAMAFWGI 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14431.3043.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFL1_ECTSI2.320e-2061.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 8..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14431contigH-elongata_contig14431:1..177 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14431.3043.1mRNA_H-elongata_contig14431.3043.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14431 1..177 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14431.3043.1 ID=prot_H-elongata_contig14431.3043.1|Name=mRNA_H-elongata_contig14431.3043.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MGEDRLEFPKCVTSSSAEGRTWFARGWLHVLNFNHEEGIECFKECLRVDD
TCLMALWGI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf