mRNA_H-elongata_contig14430.3041.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14430.3041.1
Unique NamemRNA_H-elongata_contig14430.3041.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14430.3041.1 vs. uniprot
Match: A0A6H5KC60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC60_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.700e-9
Identity = 57/193 (29.53%), Postives = 81/193 (41.97%), Query Frame = 2 
Query:  242 TRYHCTHCGLKHESFCQLLNHVSDDSTLAELTKRLCLEC------NKPSSDELGDERQIKRKKRGTPVLIAPQTPGGVMAMSRG-VNTKIHDG-----ALLV-----RGSNLHDDTSPLDVT----------RRPKLAIVAIEAESRMLKISPEDNCALNRVINKILLSLHPQGTVAFGLPRPWYLHTARICG 739
            T Y CT C + H   C     V+++       +R C++C      N+ + +     R + + K                  SRG V   +  G     A+L+       + LHD T PLD T            PKL IV+I AE R+LK S   N  L RVI+ +   +HP GT+A  +P PW  H  R+ G
Sbjct:  282 TSYICTECSITHMGACANATFVTEEIA----KERRCIKCPRSLDGNEGAGEAEDKARDVGKGKXXXXXXXXXXXXXXXXEASRGRVRPSLLGGPSGNEAVLMDKCRDENATLHD-TVPLDPTGSDVDKLSFRNAPKLVIVSIGAEQRLLKTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRLQG 469
[Close]
BLAST of mRNA_H-elongata_contig14430.3041.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.340e-7
Identity = 35/93 (37.63%), Postives = 47/93 (50.54%), Query Frame = 2 
Query:  455 VMAMSRGVNTKIHDGALLVRGSNLHDDTSPLDVTRRPKLAIVAIEAESRMLKISPEDNCALNRVINKILLSLHPQGTVAFGLPRPWYLHTARI 733
            +M   R  NT +HD   +V       D   L     PKL IV+I AE R+L+ S   N  L RVI+ +   +HP GT+A  +P PW  H  R+
Sbjct:  320 LMDKCRDENTTLHD---IVPLDPTGSDVDKLSFRNAPKLVIVSIGAEQRLLRTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRL 409
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14430.3041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC60_9PHAE5.700e-929.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE3.340e-737.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14430contigH-elongata_contig14430:414..2824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size816
Cds size798
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14430.3041.1prot_H-elongata_contig14430.3041.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14430 430..2824 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.6714413-UTR-H-elongata_contig14430:413..4291622929855.6714413-UTR-H-elongata_contig14430:413..429Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14430 414..429 +
1691679184.7565193-UTR-H-elongata_contig14430:413..4291691679184.7565193-UTR-H-elongata_contig14430:413..429Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14430 414..429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.682308-CDS-H-elongata_contig14430:429..6591622929855.682308-CDS-H-elongata_contig14430:429..659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14430 430..659 +
1691679184.765578-CDS-H-elongata_contig14430:429..6591691679184.765578-CDS-H-elongata_contig14430:429..659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14430 430..659 +
1622929855.6939356-CDS-H-elongata_contig14430:945..11701622929855.6939356-CDS-H-elongata_contig14430:945..1170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14430 946..1170 +
1691679184.775173-CDS-H-elongata_contig14430:945..11701691679184.775173-CDS-H-elongata_contig14430:945..1170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14430 946..1170 +
1622929855.7104182-CDS-H-elongata_contig14430:1851..21171622929855.7104182-CDS-H-elongata_contig14430:1851..2117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14430 1852..2117 +
1691679184.7835228-CDS-H-elongata_contig14430:1851..21171691679184.7835228-CDS-H-elongata_contig14430:1851..2117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14430 1852..2117 +
1622929855.7246087-CDS-H-elongata_contig14430:2747..28241622929855.7246087-CDS-H-elongata_contig14430:2747..2824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14430 2748..2824 +
1691679184.7948742-CDS-H-elongata_contig14430:2747..28241691679184.7948742-CDS-H-elongata_contig14430:2747..2824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14430 2748..2824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14430.3041.1

>prot_H-elongata_contig14430.3041.1 ID=prot_H-elongata_contig14430.3041.1|Name=mRNA_H-elongata_contig14430.3041.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
MRMSECIKNWTKSLESAKAVIARKTLAGCGKKRRPDKDMEREEDSNEEGD
NRDSGRPTAGSREGNLCTRCKPDEKTRYHCTHCGLKHESFCQLLNHVSDD
STLAELTKRLCLECNKPSSDELGDERQIKRKKRGTPVLIAPQTPGGVMAM
SRGVNTKIHDGALLVRGSNLHDDTSPLDVTRRPKLAIVAIEAESRMLKIS
PEDNCALNRVINKILLSLHPQGTVAFGLPRPWYLHTARICGGRRRESTSL
HGRNAAEAIMIAHKVP
back to top

mRNA from alignment at H-elongata_contig14430:414..2824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14430.3041.1 ID=mRNA_H-elongata_contig14430.3041.1|Name=mRNA_H-elongata_contig14430.3041.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2411bp|location=Sequence derived from alignment at H-elongata_contig14430:414..2824+ (Himanthalia elongata Himel1 dioecious)
GATTGCGAAGAGGAATATGCGCATGAGCGAATGTATCAAGAACTGGACTA
AGAGTTTAGAGTCTGCCAAGGCCGTCATTGCACGGAAGACCCTGGCGGGA
TGTGGGAAGAAGAGACGGCCCGACAAAGATATGGAGAGAGAGGAAGATTC
CAATGAAGAGGGCGACAACAGGGATAGCGGGCGACCTACGGCGGGTAGCC
GCGAAGGCAACTTGTGCACAAGGTGCAAACCTGATGAAAAAACGAGGTAC
GTGTGAGAATGATAACTGCCGTTATGCTTAACGAAGTGCGCAAAACAACC
GTTTCGTCTCTGTGGGAGTACCATAAAATAATTGGCATTTTTCATCTTCC
TTGATTAAATATGTTCTAGAAGTCAAAAATTACTTTCGTGGTTGTCGGAC
TCTCTCGGCCTTAGGGTACTATTGATAGAAAATGAAAAATATGCTCTTAA
AAGGCAGGAAATTATGTCATTTTGACGCGATAACAAGAATATCGTGCTTC
TGACGTACTCGTTCGTTGCTCACCGAAACCAGGTACCACTGTACACACTG
TGGCTTAAAGCACGAAAGCTTCTGCCAACTCCTGAATCATGTCTCCGATG
ATTCCACACTAGCCGAGCTTACGAAACGCCTCTGCCTCGAGTGCAACAAA
CCCAGCAGCGATGAACTAGGCGACGAAAGACAGATTAAACGCAAGAAGAG
GGGTACACCTGTACTGATTGCCCCTCAGACTCCGGGTGGAGTCATGGCCA
TGAGCAGGTATGGTGTACCAGGGTAATCGTGTTCAGGTTTTCGATGTTTT
TCTATTAAGGGGTAAACATCTTGAAAAATAATGATATACCGCACCCAGGA
GTATTATAAGTTAAACTGAACCGTGTGACTAAACCCGCTTTGCAACCGTC
ATGCCCACTTTTCCCATGTGGGTGTGGGAAAATAGATGCGTATATTACTT
GGTCCATGGGGTTACCTGAAAAGGCTGCACCCGTTACTCGAGCTCCTTTA
AGGACTACTGGCTCAGCGCCGGCGAACTCTCGGTAGTAAACGCCATCGAT
ACGCAATTGCGTGACCTGATGAAATCGGGATTGATACGATGGCGGTTGAC
GGTAGATATCGATCCCGTCGCGGAGAACGGGAGGATTGAAAGGATCCCGG
GAGTAAACACCAGATTCAGCTTGGGATGAGAGAGAATGAGTGGCTGACGC
GGGACGGGACTACTGAACCTGTCTCGCGAGAACAAAATCTCAGGCGCGAA
CGGGGACAGGGGAAAATATTTTTCCTGTTCAGCTGACCACTAATAGAGCA
GAAGGCAACCAAATCCGGTTGATCCTTCTGCTAAATGTGCGACCATACTA
ATGCAATATGTACTTCACTGCACCGCGCTACACTAATTAATGACTATAAT
AGCAATCACTAAACATTTAGCTCTATTATCTCATCCAGAGGTGTCAACAC
CAAGATACATGATGGAGCTCTCCTGGTTCGAGGGTCTAACCTTCACGACG
ATACATCGCCTCTCGACGTCACTCGACGGCCGAAGCTCGCCATCGTCGCT
ATCGAGGCTGAAAGCCGCATGTTGAAGATATCACCCGAGGACAACTGCGC
ACTTAATCGAGTGATCAACAAGATACTCCTTTCCTTACATCCTCAAGGAA
CAGTTGCATTTGGGTTGCCTCGCCCATGGTATTTACACACTGCGAGAATC
TGTGGTGAGGCGAAAGCTGGAAACAGAGGAGTGATGAACTCATCATCGTA
GATCAGCAAGTTATTTTTATTTTTTTTAAACTTGAAACCATTCCAACCCT
CCAAACATCCACGCCTTCTTAGCACCATGAGAGCTGCAGTCCAGGGGACC
AATTATCGTCAGATTCGAATGTGTACACTACTAACCTTGCGTACAAAATC
TTCACACATAATAAATCGTAGTAAGTTAATTGGTACGTGAGGTATGAAAT
TATTAGATTATTACATTTAAGCACAAAATCGTCAGATCGATGAAAAAAAA
AAAGACTAAAACTACATTTTCAAAATATTTATTAGCCTATCGGTTACGAG
ATTAGCTCATTATTCGGCGCTCTTGTCTTTAACAGACACTGAGCGATATT
CATGTTCACCTTGTTTCACATAATGGCGCATTCCTTTATTTTTTACCGAT
CCAGAAACGTTCGTCCTCATTTAGCAGCGTTTAACTCACGGTGTGATCAC
CGCTTTCACCACGAAGACTCCCATTCTCTCCATCTTGTCCCTGTCCAAAC
ACGTTCGAGCAGATGCTCTCTCAAAAGACTGTACCATGATCATCGAGGAA
AGCCCGTTACTACTGATATATCCTTACCCATCAGGAGGACGCCGCAGGGA
GTCAACCTCGCTCCACGGTCGTAACGCCGCCGAGGCGATCATGATTGCGC
ACAAGGTTCCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14430:414..2824+

>mRNA_H-elongata_contig14430.3041.1 ID=mRNA_H-elongata_contig14430.3041.1|Name=mRNA_H-elongata_contig14430.3041.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig14430:414..2824+ (Himanthalia elongata Himel1 dioecious)
ATGCGCATGAGCGAATGTATCAAGAACTGGACTAAGAGTTTAGAGTCTGC
CAAGGCCGTCATTGCACGGAAGACCCTGGCGGGATGTGGGAAGAAGAGAC
GGCCCGACAAAGATATGGAGAGAGAGGAAGATTCCAATGAAGAGGGCGAC
AACAGGGATAGCGGGCGACCTACGGCGGGTAGCCGCGAAGGCAACTTGTG
CACAAGGTGCAAACCTGATGAAAAAACGAGATGCGCATGAGCGAATGTAT
CAAGAACTGGACTAAGAGTTTAGAGTCTGCCAAGGCCGTCATTGCACGGA
AGACCCTGGCGGGATGTGGGAAGAAGAGACGGCCCGACAAAGATATGGAG
AGAGAGGAAGATTCCAATGAAGAGGGCGACAACAGGGATAGCGGGCGACC
TACGGCGGGTAGCCGCGAAGGCAACTTGTGCACAAGGTGCAAACCTGATG
AAAAAACGAGGTACCACTGTACACACTGTGGCTTAAAGCACGAAAGCTTC
TGCCAACTCCTGAATCATGTCTCCGATGATTCCACACTAGCCGAGCTTAC
GAAACGCCTCTGCCTCGAGTGCAACAAACCCAGCAGCGATGAACTAGGCG
ACGAAAGACAGATTAAACGCAAGAAGAGGGGTACACCTGTACTGATTGCC
CCTCAGACTCCGGGTGGAGTCATGGCCATGAGCAGGTACCACTGTACACA
CTGTGGCTTAAAGCACGAAAGCTTCTGCCAACTCCTGAATCATGTCTCCG
ATGATTCCACACTAGCCGAGCTTACGAAACGCCTCTGCCTCGAGTGCAAC
AAACCCAGCAGCGATGAACTAGGCGACGAAAGACAGATTAAACGCAAGAA
GAGGGGTACACCTGTACTGATTGCCCCTCAGACTCCGGGTGGAGTCATGG
CCATGAGCAGAGGTGTCAACACCAAGATACATGATGGAGCTCTCCTGGTT
CGAGGGTCTAACCTTCACGACGATACATCGCCTCTCGACGTCACTCGACG
GCCGAAGCTCGCCATCGTCGCTATCGAGGCTGAAAGCCGCATGTTGAAGA
TATCACCCGAGGACAACTGCGCACTTAATCGAGTGATCAACAAGATACTC
CTTTCCTTACATCCTCAAGGAACAGTTGCATTTGGGTTGCCTCGCCCATG
GTATTTACACACTGCGAGAATCTGTGAGGTGTCAACACCAAGATACATGA
TGGAGCTCTCCTGGTTCGAGGGTCTAACCTTCACGACGATACATCGCCTC
TCGACGTCACTCGACGGCCGAAGCTCGCCATCGTCGCTATCGAGGCTGAA
AGCCGCATGTTGAAGATATCACCCGAGGACAACTGCGCACTTAATCGAGT
GATCAACAAGATACTCCTTTCCTTACATCCTCAAGGAACAGTTGCATTTG
GGTTGCCTCGCCCATGGTATTTACACACTGCGAGAATCTGTGGAGGACGC
CGCAGGGAGTCAACCTCGCTCCACGGTCGTAACGCCGCCGAGGCGATCAT
GATTGCGCACAAGGTTCCTGAGGACGCCGCAGGGAGTCAACCTCGCTCCA
CGGTCGTAACGCCGCCGAGGCGATCATGATTGCGCACAAGGTTCCT
back to top