mRNA_H-elongata_contig144297.3040.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144297.3040.1
Unique NamemRNA_H-elongata_contig144297.3040.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144297.3040.1 vs. uniprot
Match: A0A7S4DEC0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEC0_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 1.970e-17
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 DHKPNREDETERIKKAGGMVIHKRVMGELAVSRAFGDRAFKMGIK 135
            DHKP+REDETERIKKAGG VIHKRVMGELAVSRAFGD+ FKMG++
Sbjct:  263 DHKPSREDETERIKKAGGFVIHKRVMGELAVSRAFGDKEFKMGLQ 307
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BLAST of mRNA_H-elongata_contig144297.3040.1 vs. uniprot
Match: A0A6H5KIH1_9PHAE (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIH1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.250e-17
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 DHKPNREDETERIKKAGGMVIHKRVMGELAVSRAFGDRAFKMGIK 135
            DHKP+REDETERIK+AGGMVI +RVMGELAVSRAFGDRAFK+GIK
Sbjct: 1009 DHKPSREDETERIKRAGGMVIQRRVMGELAVSRAFGDRAFKVGIK 1053
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BLAST of mRNA_H-elongata_contig144297.3040.1 vs. uniprot
Match: A0A7S2GBR9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GBR9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.110e-14
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 DHKPNREDETERIKKAGGMVIHKRVMGELAVSRAFGDRAFKMGI 132
            DHKP+REDE  RIKKAGG +IHKRVMGELAVSRAFGD  FK GI
Sbjct:  372 DHKPSREDEAARIKKAGGFIIHKRVMGELAVSRAFGDADFKKGI 415
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BLAST of mRNA_H-elongata_contig144297.3040.1 vs. uniprot
Match: A0A7S0C6U0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C6U0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.260e-14
Identity = 31/45 (68.89%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 DHKPNREDETERIKKAGGMVIHKRVMGELAVSRAFGDRAFKMGIK 135
            DHKPNR DE  R+++AGG ++H+RVMGELA++RAFGD++FKMGIK
Sbjct:  505 DHKPNRPDEAARVRQAGGFILHRRVMGELAITRAFGDKSFKMGIK 549
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BLAST of mRNA_H-elongata_contig144297.3040.1 vs. uniprot
Match: A0A1E7FUU2_9STRA (Protein serine/threonine phosphatase 2C n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FUU2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.490e-14
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 DHKPNREDETERIKKAGGMVIHKRVMGELAVSRAFGDRAFKMGIK 135
            DHKP+R DE  R++ AGG ++HKRVMGELA++RAFGD++FKMGIK
Sbjct:  127 DHKPSRPDEAARVRAAGGFILHKRVMGELAITRAFGDKSFKMGIK 171
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BLAST of mRNA_H-elongata_contig144297.3040.1 vs. uniprot
Match: A0A7R9ZGZ6_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A7R9ZGZ6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 9.630e-14
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 DHKPNREDETERIKKAGGMVIHKRVMGELAVSRAFGDRAFKMGIK 135
            DHKP+R DE  R++ AGG ++HKRVMGELA++RAFGD++FKMGIK
Sbjct:  160 DHKPSRPDEAARVRAAGGFILHKRVMGELAITRAFGDKSFKMGIK 204
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BLAST of mRNA_H-elongata_contig144297.3040.1 vs. uniprot
Match: A0A8J9T827_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T827_PHATR)

HSP 1 Score: 72.0 bits (175), Expect = 1.220e-13
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 DHKPNREDETERIKKAGGMVIHKRVMGELAVSRAFGDRAFKMGIK 135
            DHKP+R DE  R++ AGG ++HKRVMGELA++RAFGD++FKMGIK
Sbjct:  208 DHKPSRPDEAARVRAAGGFILHKRVMGELAITRAFGDKSFKMGIK 252
[Close]
BLAST of mRNA_H-elongata_contig144297.3040.1 vs. uniprot
Match: A0A7S1V3P3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V3P3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.460e-13
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 DHKPNREDETERIKKAGGMVIHKRVMGELAVSRAFGDRAFKMGIK 135
            DHKP+R DE  R++ AGG ++HKRVMGELA++RAFGD++FKMGIK
Sbjct:  304 DHKPSRPDEAARVRAAGGFILHKRVMGELAITRAFGDKSFKMGIK 348
[Close]
BLAST of mRNA_H-elongata_contig144297.3040.1 vs. uniprot
Match: A0A7S2FV88_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV88_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.480e-13
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 DHKPNREDETERIKKAGGMVIHKRVMGELAVSRAFGDRAFKMGI 132
            DHKP+REDE  RIK AGG +IHKRVMGELAVSRAFGD  FK GI
Sbjct:  365 DHKPSREDEAARIKAAGGFIIHKRVMGELAVSRAFGDAEFKKGI 408
[Close]
BLAST of mRNA_H-elongata_contig144297.3040.1 vs. uniprot
Match: B8C024_THAPS (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C024_THAPS)

HSP 1 Score: 72.0 bits (175), Expect = 1.480e-13
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 DHKPNREDETERIKKAGGMVIHKRVMGELAVSRAFGDRAFKMGIK 135
            DHKP+R DE  R++ AGG ++HKRVMGELA++RAFGD++FKMGIK
Sbjct:  379 DHKPSRPDEAARVRAAGGFILHKRVMGELAITRAFGDKSFKMGIK 423
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144297.3040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DEC0_HETAK1.970e-1786.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5KIH1_9PHAE3.250e-1788.89PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S2GBR9_9STRA3.110e-1481.82Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0C6U0_9STRA4.260e-1468.89Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A1E7FUU2_9STRA5.490e-1468.89Protein serine/threonine phosphatase 2C n=1 Tax=Fr... [more]
A0A7R9ZGZ6_9STRA9.630e-1468.89Hypothetical protein n=2 Tax=Mediophyceae TaxID=58... [more]
A0A8J9T827_PHATR1.220e-1368.89Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
A0A7S1V3P3_9STRA1.460e-1368.89Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2FV88_9STRA1.480e-1379.55Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B8C024_THAPS1.480e-1368.89PPM-type phosphatase domain-containing protein (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144297contigH-elongata_contig144297:232..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue9e-15
Seed eggNOG ortholog2880.D7G1B3
KEGG koko:K01090
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.6273515-CDS-H-elongata_contig144297:231..3661622929855.6273515-CDS-H-elongata_contig144297:231..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144297 232..366 +
1691679184.7416182-CDS-H-elongata_contig144297:231..3661691679184.7416182-CDS-H-elongata_contig144297:231..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144297 232..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144297.3040.1prot_H-elongata_contig144297.3040.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144297 232..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144297.3040.1

>prot_H-elongata_contig144297.3040.1 ID=prot_H-elongata_contig144297.3040.1|Name=mRNA_H-elongata_contig144297.3040.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
DHKPNREDETERIKKAGGMVIHKRVMGELAVSRAFGDRAFKMGIK
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mRNA from alignment at H-elongata_contig144297:232..366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144297.3040.1 ID=mRNA_H-elongata_contig144297.3040.1|Name=mRNA_H-elongata_contig144297.3040.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig144297:232..366+ (Himanthalia elongata Himel1 dioecious)
GATCACAAGCCGAACCGCGAGGATGAAACGGAGCGGATCAAGAAGGCGGG
CGGGATGGTGATCCACAAGAGGGTCATGGGAGAGCTCGCTGTGTCGCGCG
CGTTCGGCGATCGAGCCTTCAAGATGGGGATCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig144297:232..366+

>mRNA_H-elongata_contig144297.3040.1 ID=mRNA_H-elongata_contig144297.3040.1|Name=mRNA_H-elongata_contig144297.3040.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig144297:232..366+ (Himanthalia elongata Himel1 dioecious)
GATCACAAGCCGAACCGCGAGGATGAAACGGAGCGGATCAAGAAGGCGGG
CGGGATGGTGATCCACAAGAGGGTCATGGGAGAGCTCGCTGTGTCGCGCG
CGTTCGGCGATCGAGCCTTCAAGATGGGGATCAAGGATCACAAGCCGAAC
CGCGAGGATGAAACGGAGCGGATCAAGAAGGCGGGCGGGATGGTGATCCA
CAAGAGGGTCATGGGAGAGCTCGCTGTGTCGCGCGCGTTCGGCGATCGAG
CCTTCAAGATGGGGATCAAG
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