mRNA_H-elongata_contig144244.3037.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144244.3037.1
Unique NamemRNA_H-elongata_contig144244.3037.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig144244.3037.1 vs. uniprot
Match: D7FW14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW14_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 5.110e-21
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    1 EPLKYIPAWGGFCSYGIANESVWTETTLGPFSDPTMWEILPDGRLHVFR 147
            + LKY+PAWGGFCSYGIANESVWT TTLGPF +P+ W I   GRLH+FR
Sbjct:   21 DKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIY-GGRLHIFR 68          
BLAST of mRNA_H-elongata_contig144244.3037.1 vs. uniprot
Match: D7FW13_ECTSI (YHS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW13_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 6.470e-18
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 EPLKYIPAWGGFCSYGIANESVWTETTLGPFSDPTMWEILP-DGRLHVFR 147
            +P++YIPAWGGFCSYG+A E+ W    LGPF DP+ W ILP DG+LHVFR
Sbjct:  162 DPVRYIPAWGGFCSYGVAAETFWRPDILGPFGDPSKWLILPGDGKLHVFR 211          
BLAST of mRNA_H-elongata_contig144244.3037.1 vs. uniprot
Match: D7G5N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N6_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 7.150e-15
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    1 EPLKYIPAWGGFCSYGIANESVWTETTLGPFSDPTMWEILPDGRLHVFR 147
             PL YIPAWGGFC+YGIA E  WT +TLGP SDP  W I  D  L +FR
Sbjct:  130 SPLDYIPAWGGFCAYGIAAEDWWTVSTLGPPSDPNSWLITDDNVLRIFR 178          
BLAST of mRNA_H-elongata_contig144244.3037.1 vs. uniprot
Match: F0Y5C1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5C1_AURAN)

HSP 1 Score: 73.2 bits (178), Expect = 7.590e-14
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 1
Query:    1 EPLKYIPAWGGFCSYGIANESVWTETTLGPFSDPTMWEILPDGRLHVF 144
            +P +Y P +GGFCSYGI++E+ WT++TLGPFS+P +W I+ DGRL VF
Sbjct:   76 DPARYAPKFGGFCSYGISDETFWTKSTLGPFSNPNVWRIV-DGRLLVF 122          
BLAST of mRNA_H-elongata_contig144244.3037.1 vs. uniprot
Match: A0A6H5JXZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ9_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.110e-12
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 EPLKYIPAWGGFCSYGIANESVWTETTLGPFSDPTMWEILPDGRLHVFR 147
            +P KY+PAWGGFCS+GI++E +W    LGP S+P +W ++ D RL++FR
Sbjct:  161 DPEKYLPAWGGFCSFGISHEDIWGPDVLGPPSNPDIW-LIEDDRLYLFR 208          
BLAST of mRNA_H-elongata_contig144244.3037.1 vs. uniprot
Match: A0A7S2CFY1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CFY1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.690e-12
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 EPLKYIPAWGGFCSYGIANESVWTETTLGPFSDPTMWEILPDGRLHVF 144
            +P  Y P WGGFC YGI+ E+ WT++TLGP ++P +W I+ DG L+ F
Sbjct:  129 DPTSYFPKWGGFCGYGISEETWWTKSTLGPDANPNVWSII-DGDLYFF 175          
BLAST of mRNA_H-elongata_contig144244.3037.1 vs. uniprot
Match: D7FW15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW15_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.180e-11
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 EPLKYIPAWGGFCSYGIANESVWTETTLGPFSDPTMWEILPDGRLHVFR 147
            +P +Y+PAWGGFC +GI++E VW    LGP S+P  W ++ D RL++FR
Sbjct:  161 DPERYLPAWGGFCGFGISHEVVWGPDVLGPPSNPDFW-LIEDDRLYLFR 208          
BLAST of mRNA_H-elongata_contig144244.3037.1 vs. uniprot
Match: A0A7S3UVA0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVA0_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 1.360e-10
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1
Query:    1 EPLKYIPAWGGFCSYGIANESVWTETTLGPFSDPTMWEILPDGRLHVF 144
            +P KY+PAWGGFC+YG+A E+ WT  T+     P  W I+ DGRL  F
Sbjct:   64 DPEKYVPAWGGFCAYGVAEETWWTAETMSAGVVPDAWRII-DGRLFFF 110          
BLAST of mRNA_H-elongata_contig144244.3037.1 vs. uniprot
Match: A0A7S3JR48_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR48_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.010e-9
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    1 EPLKYIPAWGGFCSYGIANESVWTETTLGPFSDPTMWEILPDGRLHVF 144
             P KY+P +GGFCSYGI NE  WT+ TLGP ++  +W I+ D  L VF
Sbjct:  195 NPDKYVPKFGGFCSYGITNEFFWTKDTLGPNANKNVW-IIYDDHLFVF 241          
BLAST of mRNA_H-elongata_contig144244.3037.1 vs. uniprot
Match: A0A7S2V1S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.610e-9
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 EPLKYIPAWGGFCSYGIANESVWTETTLGPFSDPTMWEILPDGRLHVFR 147
            +P  Y+P +GGFC+YG+A E+ WT +TL   ++P ++ IL +G LHVFR
Sbjct:   86 KPEAYVPEFGGFCTYGVAEETYWTASTLAAPANPLVYLIL-EGHLHVFR 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144244.3037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FW14_ECTSI5.110e-2173.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FW13_ECTSI6.470e-1866.00YHS domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G5N6_ECTSI7.150e-1563.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0Y5C1_AURAN7.590e-1460.42Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6H5JXZ9_9PHAE1.110e-1253.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2CFY1_9STRA3.690e-1252.08Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7FW15_ECTSI2.180e-1151.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UVA0_HETAK1.360e-1052.08Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3JR48_9STRA1.010e-954.17Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2V1S8_9STRA1.610e-948.98Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144244contigH-elongata_contig144244:267..419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog2880.D7G5N6
EggNOG OGs2D48G@1,2SU9E@2759
Ec32 ortholog descriptionYHS domain
Ec32 orthologEc-12_008530.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002970.1
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.3423755-CDS-H-elongata_contig144244:266..4191622929855.3423755-CDS-H-elongata_contig144244:266..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144244 267..419 -
1691679184.6093585-CDS-H-elongata_contig144244:266..4191691679184.6093585-CDS-H-elongata_contig144244:266..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144244 267..419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144244.3037.1prot_H-elongata_contig144244.3037.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144244 267..419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144244.3037.1

>prot_H-elongata_contig144244.3037.1 ID=prot_H-elongata_contig144244.3037.1|Name=mRNA_H-elongata_contig144244.3037.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
EPLKYIPAWGGFCSYGIANESVWTETTLGPFSDPTMWEILPDGRLHVFRR
*
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mRNA from alignment at H-elongata_contig144244:267..419-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144244.3037.1 ID=mRNA_H-elongata_contig144244.3037.1|Name=mRNA_H-elongata_contig144244.3037.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig144244:267..419- (Himanthalia elongata Himel1 dioecious)
GAGCCGCTGAAGTACATCCCGGCTTGGGGAGGGTTCTGTTCGTACGGCAT TGCGAACGAATCGGTGTGGACCGAAACCACGTTGGGGCCGTTCAGCGATC CGACCATGTGGGAGATTCTGCCTGACGGCCGTCTGCACGTTTTCCGAAGG TGA
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Coding sequence (CDS) from alignment at H-elongata_contig144244:267..419-

>mRNA_H-elongata_contig144244.3037.1 ID=mRNA_H-elongata_contig144244.3037.1|Name=mRNA_H-elongata_contig144244.3037.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig144244:267..419- (Himanthalia elongata Himel1 dioecious)
GAGCCGCTGAAGTACATCCCGGCTTGGGGAGGGTTCTGTTCGTACGGCAT
TGCGAACGAATCGGTGTGGACCGAAACCACGTTGGGGCCGTTCAGCGATC
CGACCATGTGGGAGATTCTGCCTGACGGCCGTCTGCACGTTTTCCGAAGG
TGAGAGCCGCTGAAGTACATCCCGGCTTGGGGAGGGTTCTGTTCGTACGG
CATTGCGAACGAATCGGTGTGGACCGAAACCACGTTGGGGCCGTTCAGCG
ATCCGACCATGTGGGAGATTCTGCCTGACGGCCGTCTGCACGTTTTCCGA
AGGTGA
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