mRNA_H-elongata_contig14413.3031.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14413.3031.1
Unique NamemRNA_H-elongata_contig14413.3031.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14413.3031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14413contigH-elongata_contig14413:2331..2895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size545
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14413.3031.1prot_H-elongata_contig14413.3031.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14413 2341..2895 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.5943232-UTR-H-elongata_contig14413:2330..23401622929854.5943232-UTR-H-elongata_contig14413:2330..2340Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14413 2331..2340 +
1691679184.2894895-UTR-H-elongata_contig14413:2330..23401691679184.2894895-UTR-H-elongata_contig14413:2330..2340Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14413 2331..2340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.6109114-CDS-H-elongata_contig14413:2340..26381622929854.6109114-CDS-H-elongata_contig14413:2340..2638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14413 2341..2638 +
1691679184.2969851-CDS-H-elongata_contig14413:2340..26381691679184.2969851-CDS-H-elongata_contig14413:2340..2638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14413 2341..2638 +
1622929854.6248417-CDS-H-elongata_contig14413:2659..28951622929854.6248417-CDS-H-elongata_contig14413:2659..2895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14413 2660..2895 +
1691679184.305022-CDS-H-elongata_contig14413:2659..28951691679184.305022-CDS-H-elongata_contig14413:2659..2895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14413 2660..2895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14413.3031.1

>prot_H-elongata_contig14413.3031.1 ID=prot_H-elongata_contig14413.3031.1|Name=mRNA_H-elongata_contig14413.3031.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
MQGNDRRGDGRGGSSVGIGSLPGGPRNGPEGMRGDPRGGHGESAQGNNKN
SNHVGARSGGGGGGSMRGGRSPMRPGMSGGPNGMRGDVGSGSGNMSTGRS
IMGAQAPGPHGMYPGGGGGIPPYGPLGNRGRDGRSPVRHVAEDGGRQGAP
GMRMSGTGPRPGQHQDTGPGTRTLGVPG
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mRNA from alignment at H-elongata_contig14413:2331..2895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14413.3031.1 ID=mRNA_H-elongata_contig14413.3031.1|Name=mRNA_H-elongata_contig14413.3031.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=565bp|location=Sequence derived from alignment at H-elongata_contig14413:2331..2895+ (Himanthalia elongata Himel1 dioecious)
GCCGGTCAACATGCAGGGGAACGATCGTCGTGGCGACGGGCGAGGCGGGA
GCAGCGTCGGCATCGGTTCCCTCCCCGGTGGACCACGTAATGGTCCCGAG
GGGATGCGGGGCGATCCACGCGGAGGCCATGGAGAGAGCGCACAAGGCAA
CAATAAAAATAGCAACCATGTCGGTGCACGCAGCGGTGGCGGCGGCGGTG
GAAGCATGCGAGGCGGGAGGTCCCCCATGAGACCCGGGATGAGCGGAGGA
CCTAACGGAATGCGAGGGGATGTCGGGAGCGGTAGCGGTAACATGAGCAC
CGGGCGAAGCGTCGAAGGCGCTCCGTCAGGCATTATGGGAGCCCAGGCAC
CCGGACCACACGGCATGTATCCCGGAGGAGGGGGAGGTATTCCACCGTAC
GGTCCCCTTGGCAACAGGGGCCGCGATGGACGCTCGCCGGTCCGACATGT
TGCGGAGGATGGGGGACGTCAAGGCGCTCCAGGGATGAGAATGAGTGGAA
CAGGTCCGCGCCCCGGGCAGCATCAAGACACGGGACCGGGGACGCGCACG
TTGGGGGTTCCGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig14413:2331..2895+

>mRNA_H-elongata_contig14413.3031.1 ID=mRNA_H-elongata_contig14413.3031.1|Name=mRNA_H-elongata_contig14413.3031.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig14413:2331..2895+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGGGAACGATCGTCGTGGCGACGGGCGAGGCGGGAGCAGCGTCGG
CATCGGTTCCCTCCCCGGTGGACCACGTAATGGTCCCGAGGGGATGCGGG
GCGATCCACGCGGAGGCCATGGAGAGAGCGCACAAGGCAACAATAAAAAT
AGCAACCATGTCGGTGCACGCAGCGGTGGCGGCGGCGGTGGAAGCATGCG
AGGCGGGAGGTCCCCCATGAGACCCGGGATGAGCGGAGGACCTAACGGAA
TGCGAGGGGATGTCGGGAGCGGTAGCGGTAACATGAGCACCGGGCGAAAT
GCAGGGGAACGATCGTCGTGGCGACGGGCGAGGCGGGAGCAGCGTCGGCA
TCGGTTCCCTCCCCGGTGGACCACGTAATGGTCCCGAGGGGATGCGGGGC
GATCCACGCGGAGGCCATGGAGAGAGCGCACAAGGCAACAATAAAAATAG
CAACCATGTCGGTGCACGCAGCGGTGGCGGCGGCGGTGGAAGCATGCGAG
GCGGGAGGTCCCCCATGAGACCCGGGATGAGCGGAGGACCTAACGGAATG
CGAGGGGATGTCGGGAGCGGTAGCGGTAACATGAGCACCGGGCGAAGCAT
TATGGGAGCCCAGGCACCCGGACCACACGGCATGTATCCCGGAGGAGGGG
GAGGTATTCCACCGTACGGTCCCCTTGGCAACAGGGGCCGCGATGGACGC
TCGCCGGTCCGACATGTTGCGGAGGATGGGGGACGTCAAGGCGCTCCAGG
GATGAGAATGAGTGGAACAGGTCCGCGCCCCGGGCAGCATCAAGACACGG
GACCGGGGACGCGCACGTTGGGGGTTCCGGGCGCATTATGGGAGCCCAGG
CACCCGGACCACACGGCATGTATCCCGGAGGAGGGGGAGGTATTCCACCG
TACGGTCCCCTTGGCAACAGGGGCCGCGATGGACGCTCGCCGGTCCGACA
TGTTGCGGAGGATGGGGGACGTCAAGGCGCTCCAGGGATGAGAATGAGTG
GAACAGGTCCGCGCCCCGGGCAGCATCAAGACACGGGACCGGGGACGCGC
ACGTTGGGGGTTCCGGGC
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