mRNA_H-elongata_contig144071.3028.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144071.3028.1
Unique NamemRNA_H-elongata_contig144071.3028.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig144071.3028.1 vs. uniprot
Match: D7G4I4_ECTSI (Histone H3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4I4_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 6.590e-65
Identity = 114/121 (94.21%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKPGT----EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQIARRIRGERS 351
            MARTKQTARKSTGGKAPRKQLATKAA  PGT    EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ+ARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAA-PPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 120
[Close]
BLAST of mRNA_H-elongata_contig144071.3028.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.290e-63
Identity = 115/136 (84.56%), Postives = 117/136 (86.03%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK---------------PGT----EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQIARRIRGERS 351
            MARTKQTARKSTGGKAPRKQLATKAARK               PGT    EIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ+ARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig144071.3028.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 198 bits (504), Expect = 1.290e-63
Identity = 115/136 (84.56%), Postives = 117/136 (86.03%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK---------------PGT----EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQIARRIRGERS 351
            MARTKQTARKSTGGKAPRKQLATKAARK               PGT    EIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ+ARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig144071.3028.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 197 bits (501), Expect = 4.500e-63
Identity = 114/136 (83.82%), Postives = 117/136 (86.03%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK---------------PGT----EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQIARRIRGERS 351
            MARTKQTARKSTGGKAPRKQLATKAARK               PGT    EIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ+ARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_H-elongata_contig144071.3028.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 197 bits (501), Expect = 5.840e-63
Identity = 114/136 (83.82%), Postives = 117/136 (86.03%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK---------------PGT----EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQIARRIRGERS 351
            MARTKQTARKSTGGKAPRKQLATKAARK               PGT    EIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ+ARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_H-elongata_contig144071.3028.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 198 bits (504), Expect = 1.360e-62
Identity = 115/136 (84.56%), Postives = 117/136 (86.03%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK---------------PGT----EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQIARRIRGERS 351
            MARTKQTARKSTGGKAPRKQLATKAARK               PGT    EIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ+ARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_H-elongata_contig144071.3028.1 vs. uniprot
Match: A0A4C1ZSA9_EUMVA (Histone H3 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1ZSA9_EUMVA)

HSP 1 Score: 196 bits (497), Expect = 1.410e-62
Identity = 110/134 (82.09%), Postives = 115/134 (85.82%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKPGT-----------------EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQIARRIRGERS 351
            MARTKQTARKSTGGKAPRKQLATKAARKP T                 EIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ+ARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 134
[Close]
BLAST of mRNA_H-elongata_contig144071.3028.1 vs. uniprot
Match: A0A183IEF0_9BILA (Histone H3 n=2 Tax=Eukaryota TaxID=2759 RepID=A0A183IEF0_9BILA)

HSP 1 Score: 195 bits (496), Expect = 1.450e-62
Identity = 109/124 (87.90%), Postives = 115/124 (92.74%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK--PGT-----EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQIARRIRGERS 351
            MARTKQTARKSTGGKAPRKQLATKAARK  P T      IRRYQKSTELL+RKLPFQRLVREIAQDFK+DLRFQGSAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ+ARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGERNHIRRYQKSTELLVRKLPFQRLVREIAQDFKTDLRFQGSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 124
[Close]
BLAST of mRNA_H-elongata_contig144071.3028.1 vs. uniprot
Match: A0A6V7U9E7_9BILA (Histone H3 n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7U9E7_9BILA)

HSP 1 Score: 195 bits (496), Expect = 1.550e-62
Identity = 111/126 (88.10%), Postives = 115/126 (91.27%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK--PGT-------EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQIARRIRGERS 351
            MARTKQTARKSTGGKAPRKQLATKAARK  P T       EIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ+ARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERT 126
[Close]
BLAST of mRNA_H-elongata_contig144071.3028.1 vs. uniprot
Match: A0A444TKR0_ARMVU (Histone H3 n=2 Tax=Pancrustacea TaxID=197562 RepID=A0A444TKR0_ARMVU)

HSP 1 Score: 195 bits (495), Expect = 2.130e-62
Identity = 110/125 (88.00%), Postives = 115/125 (92.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARK--PGT------EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQIARRIRGERS 351
            MARTKQTARKSTGGKAPRKQLATKAARK  P T      EIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ+ARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144071.3028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4I4_ECTSI6.590e-6594.21Histone H3 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
W4GZ05_9STRA1.290e-6384.56Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A1Z5K8H0_FISSO1.290e-6384.56Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A6V1P6C6_HETAK4.500e-6383.82Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A7S1BJN3_9STRA5.840e-6383.82Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC1.360e-6284.56Histone domain-containing protein n=8 Tax=Bacillar... [more]
A0A4C1ZSA9_EUMVA1.410e-6282.09Histone H3 n=1 Tax=Eumeta variegata TaxID=151549 R... [more]
A0A183IEF0_9BILA1.450e-6287.90Histone H3 n=2 Tax=Eukaryota TaxID=2759 RepID=A0A1... [more]
A0A6V7U9E7_9BILA1.550e-6288.10Histone H3 n=1 Tax=Meloidogyne enterolobii TaxID=3... [more]
A0A444TKR0_ARMVU2.130e-6288.00Histone H3 n=2 Tax=Pancrustacea TaxID=197562 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144071contigH-elongata_contig144071:224..611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue1.2e-50
Seed eggNOG ortholog2880.D7G4I4
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size354
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.412292-CDS-H-elongata_contig144071:223..3061622929854.412292-CDS-H-elongata_contig144071:223..306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144071 224..306 +
1691679184.2253957-CDS-H-elongata_contig144071:223..3061691679184.2253957-CDS-H-elongata_contig144071:223..306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144071 224..306 +
1622929854.4256601-CDS-H-elongata_contig144071:340..6111622929854.4256601-CDS-H-elongata_contig144071:340..611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144071 341..611 +
1691679184.2347462-CDS-H-elongata_contig144071:340..6111691679184.2347462-CDS-H-elongata_contig144071:340..611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144071 341..611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144071.3028.1prot_H-elongata_contig144071.3028.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144071 224..611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144071.3028.1

>prot_H-elongata_contig144071.3028.1 ID=prot_H-elongata_contig144071.3028.1|Name=mRNA_H-elongata_contig144071.3028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MARTKQTARKSTGGKAPRKQLATKAARKPGTEIRRYQKSTELLIRKLPFQ
RLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT
IMPKDIQIARRIRGERS*
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mRNA from alignment at H-elongata_contig144071:224..611+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144071.3028.1 ID=mRNA_H-elongata_contig144071.3028.1|Name=mRNA_H-elongata_contig144071.3028.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=388bp|location=Sequence derived from alignment at H-elongata_contig144071:224..611+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGCACGAAGCAGACCGCTCGTAAGTCTACCGGAGGCAAGGCTCC
GCGCAAGCAGCTGGCAACCAAGGCTGCGCGCAAGTCTGCCCCCGCCACAG
GTGATGTGAAGCTACAGGCCGGGCACCGAAATCCGCCGTTATCAGAAGTC
AACTGAGCTCCTAATTCGTAAGCTGCCCTTCCAGCGTCTGGTGCGCGAAA
TCGCCCAGGACTTCAAGAGTGACCTACGTTTCCAGGGCTCCGCCGTGTTA
GCCCTGCAGGAGGCCGCCGAGGCATACCTTGTTGGTCTGTTCGAAGACAC
CAACCTGTGCGCCATCCACGCCAAGCGGGTAACCATCATGCCAAAGGACA
TCCAAATTGCCAGGCGCATCCGTGGAGAGCGCTCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig144071:224..611+

>mRNA_H-elongata_contig144071.3028.1 ID=mRNA_H-elongata_contig144071.3028.1|Name=mRNA_H-elongata_contig144071.3028.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig144071:224..611+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGCACGAAGCAGACCGCTCGTAAGTCTACCGGAGGCAAGGCTCC
GCGCAAGCAGCTGGCAACCAAGGCTGCGCGCAAATGGCTCGCACGAAGCA
GACCGCTCGTAAGTCTACCGGAGGCAAGGCTCCGCGCAAGCAGCTGGCAA
CCAAGGCTGCGCGCAAGCCGGGCACCGAAATCCGCCGTTATCAGAAGTCA
ACTGAGCTCCTAATTCGTAAGCTGCCCTTCCAGCGTCTGGTGCGCGAAAT
CGCCCAGGACTTCAAGAGTGACCTACGTTTCCAGGGCTCCGCCGTGTTAG
CCCTGCAGGAGGCCGCCGAGGCATACCTTGTTGGTCTGTTCGAAGACACC
AACCTGTGCGCCATCCACGCCAAGCGGGTAACCATCATGCCAAAGGACAT
CCAAATTGCCAGGCGCATCCGTGGAGAGCGCTCGTAGGCCGGGCACCGAA
ATCCGCCGTTATCAGAAGTCAACTGAGCTCCTAATTCGTAAGCTGCCCTT
CCAGCGTCTGGTGCGCGAAATCGCCCAGGACTTCAAGAGTGACCTACGTT
TCCAGGGCTCCGCCGTGTTAGCCCTGCAGGAGGCCGCCGAGGCATACCTT
GTTGGTCTGTTCGAAGACACCAACCTGTGCGCCATCCACGCCAAGCGGGT
AACCATCATGCCAAAGGACATCCAAATTGCCAGGCGCATCCGTGGAGAGC
GCTCGTAG
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