mRNA_H-elongata_contig144066.3027.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 101 bits (252), Expect = 2.580e-23 Identity = 46/78 (58.97%), Postives = 64/78 (82.05%), Query Frame = 1
Query: 1 DEKDKKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
DEK+ + YQ I G++MY+A+V RYDI++A QLAR+M+K SK HM AAKH LR+LAGT++FS+T+K+ GFKL +SD+
Sbjct: 432 DEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDS 509
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 101 bits (252), Expect = 2.620e-23 Identity = 49/76 (64.47%), Postives = 63/76 (82.89%), Query Frame = 1
Query: 13 KKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDATG 240
K+ YQ+I G+VMYLA+V+RYDI++ SQ ARAMS SK HMGAAKHLLR+L+G+ +FS+T+KR GF LTA S+A G
Sbjct: 556 KQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANG 631
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 100 bits (250), Expect = 2.820e-23 Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1
Query: 1 DEKDKKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
DEK+ + YQ I G++MY+A+V RYDI++A QLAR M+K SK HM AAKH LR+LAGT++FS+T+K+ GFKL +SD+
Sbjct: 211 DEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDS 288
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 100 bits (250), Expect = 4.920e-23 Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1
Query: 1 DEKDKKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
DEK+ + YQ I G++MY+A+V RYDI++A QLAR M+K SK HM AAKH LR+LAGT++FS+T+K+ GFKL +SD+
Sbjct: 771 DEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDS 848
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 100 bits (250), Expect = 4.970e-23 Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1
Query: 1 DEKDKKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
DEK+ + YQ I G++MY+A+V RYDI++A QLAR M+K SK HM AAKH LR+LAGT++FS+T+K+ GFKL +SD+
Sbjct: 1440 DEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDS 1517
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 9.770e-21 Identity = 45/69 (65.22%), Postives = 59/69 (85.51%), Query Frame = 1
Query: 28 SITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
+I G+V+YLA+++RYDI++ SQLARAMS SK HMGAAKHLLR+L+G+ +FS+T+KR GF LTA SDA
Sbjct: 474 AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDA 542
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 7.540e-20 Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = 1
Query: 31 ITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
I G++MY+A+V RYDI++A QLAR M+K SK HM AAKH LR+LAGT++FS+T+K+ GFKL +SD+
Sbjct: 98 IVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDS 165
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 5.270e-15 Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1
Query: 46 MYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
MY+A+V RYDI++A LAR M+K SK H AK LR+LAGT++FS+T+K+ GFKL +SD+
Sbjct: 1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDS 63
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 6.500e-15 Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 DEKDKKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
DEK+ + YQ I G+ MY+A +Y + LAR M+K SK HM AAKH LR L GT++FS+T+K+ GFKL +SD+
Sbjct: 1605 DEKETRKYQGIVGSPMYIAHXDQY------TWLARPMAKPSKVHMVAAKHTLRFLVGTIDFSITYKKGGFKLATFSDS 1676
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA) HSP 1 Score: 69.7 bits (169), Expect = 4.520e-12 Identity = 32/71 (45.07%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 22 YQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHLLRHLAGTVNFSVTFKRRGFKLTAYSDA 234
YQS+ G++MYLA +SR DIL AVS+L++ + H AAKH+LR+L+GT+N S+ +++ G + ++DA
Sbjct: 1112 YQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVYRKTGEPVVGFADA 1182 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144066.3027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig144066.3027.1 >prot_H-elongata_contig144066.3027.1 ID=prot_H-elongata_contig144066.3027.1|Name=mRNA_H-elongata_contig144066.3027.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp DEKDKKHYQSITGAVMYLARVSRYDILFAVSQLARAMSKLSKSHMGAAKHback to top mRNA from alignment at H-elongata_contig144066:332..574+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig144066.3027.1 ID=mRNA_H-elongata_contig144066.3027.1|Name=mRNA_H-elongata_contig144066.3027.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig144066:332..574+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig144066:332..574+ >mRNA_H-elongata_contig144066.3027.1 ID=mRNA_H-elongata_contig144066.3027.1|Name=mRNA_H-elongata_contig144066.3027.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig144066:332..574+ (Himanthalia elongata Himel1 dioecious)back to top |