mRNA_H-elongata_contig144026.3026.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144026.3026.1
Unique NamemRNA_H-elongata_contig144026.3026.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A6H5L234_9PHAE (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L234_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 8.940e-28
Identity = 53/89 (59.55%), Postives = 70/89 (78.65%), Query Frame = 1
Query:   10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKM-----GYTVIGIEQTNNSVCLAKVK 261
            +VPN+AGL+RT EIFA   L+VP+L V+K+ +F KISTGAEQWLP+EE+ E QL+ W+RR KK      G+ ++GIEQTNNS+CL K+K
Sbjct:  347 KVPNIAGLARTSEIFAATKLVVPDLRVMKSPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKIK 435          
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: W7U0J8_9STRA (Rrna methylase family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0J8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.370e-20
Identity = 41/83 (49.40%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCLAKV 258
            +VPNLAGL+RTCEIFA   L++P++ +L++  F KIS+ A +W+ IEE+ E +   +I+R K+ GYT++G+EQT++S CL+ V
Sbjct:  670 RVPNLAGLARTCEIFAVSKLVIPDMRLLRDPLFEKISSSAGRWIKIEEVHEGRTRAYIQRCKQEGYTIVGLEQTDDSFCLSGV 752          
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A448ZHP1_9STRA (SpoU_methylase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZHP1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.740e-18
Identity = 39/83 (46.99%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCLAKV 258
            +VPNLAGL+RTCEIFA  +L+VP++ V K  +F  IS GA  W+ +EE++E  LL W+   K  G+ ++G+EQT++S+ L ++
Sbjct: 1765 KVPNLAGLARTCEIFAAQSLVVPDMSVAKMDNFQSISVGAVDWIDMEEVKEEGLLLWLLEKKTEGFWIVGLEQTSSSIPLHQI 1847          
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: UPI001CFEAE41 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFEAE41)

HSP 1 Score: 85.1 bits (209), Expect = 2.420e-17
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
            ++PNLAGLSRTCEIFA   L++P+L VL+   F  IS  AE W+P+E  Q   L  ++ + K+ GY ++G+EQT+ SV L
Sbjct: 1816 RIPNLAGLSRTCEIFAAEKLILPHLNVLEMDEFKTISVSAEYWIPVEACQPTDLPQYLLQKKQEGYAIVGLEQTSTSVML 1895          
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: D8U9Y0_VOLCA (SpoU_methylase domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U9Y0_VOLCA)

HSP 1 Score: 80.5 bits (197), Expect = 3.500e-17
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
            ++PNLAGL+RTCE+     L++ +L   ++  F  +S  AEQWLP+EE++   LL W+ R    GYT++G+EQT  SV L
Sbjct:   10 KLPNLAGLARTCEVMGAGRLVLADLAATRDPVFTSVSVTAEQWLPMEEVKPAALLAWLERRAAEGYTLVGLEQTAQSVRL 89          
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A250XQ49_9CHLO (SpoU_methylase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XQ49_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 6.190e-17
Identity = 37/80 (46.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
            ++PNLAGL+RTCE+F    L++P++ +  + +F+ IS  AEQW+P+ E+QE  LLPW+ R +  GY ++G+EQT  S+ L
Sbjct: 2276 KLPNLAGLARTCEVFRASLLVLPDIRLAADPAFSAISVTAEQWVPMTEVQEGALLPWLLRKQAEGYCLLGLEQTAESIRL 2355          
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A835WC66_CHLIN (SpoU_methylase domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835WC66_CHLIN)

HSP 1 Score: 83.2 bits (204), Expect = 1.150e-16
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
            ++PNLAGL+RTCE+     L++ +  V ++S F  IS  AEQWLP+EE++   LL W+ R    GYT++G+EQT  SV L
Sbjct: 1919 KIPNLAGLARTCEVLGAGRLVLADTTVAQDSLFTSISVTAEQWLPMEEVKPAALLAWLERKAAEGYTLVGLEQTAESVRL 1998          
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A6A5C440_NAEFO (SpoU_methylase domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C440_NAEFO)

HSP 1 Score: 82.8 bits (203), Expect = 1.540e-16
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
            ++PNLAGLSRTCEIFA   L++P L VL+ + F  IS  AE W+P+E      L  ++ + K+ GY ++G+EQT+ SV L
Sbjct:  837 RIPNLAGLSRTCEIFAAEKLILPYLNVLEMNEFKTISVSAENWIPVEACPPTDLPQYLTQKKQEGYAIVGLEQTSTSVML 916          
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A835WST5_9CHLO (SpoU_methylase domain-containing protein n=2 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WST5_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 2.030e-16
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
            +VPNLAGL+RTCE+     L++ +  V K+  F  IS  AEQWLP+EE++   LL W+ R    GYT++G+EQT  SV L
Sbjct:  405 KVPNLAGLARTCEVLGAGRLVLVDTAVAKDPLFTSISVTAEQWLPMEEVKPAALLAWLERKAAEGYTLVGLEQTAESVRL 484          
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A2K3E6I5_CHLRE (SpoU_methylase domain-containing protein n=3 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E6I5_CHLRE)

HSP 1 Score: 82.4 bits (202), Expect = 2.150e-16
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
            +VPNLAGL+RTCE+     L++ +  V K+  F  IS  AEQWLP+EE++   LL W+ R    GYT++G+EQT  SV L
Sbjct: 1934 KVPNLAGLARTCEVLGAGRLVLADRAVAKDPLFTSISVTAEQWLPMEEVKPAALLAWLERKAAEGYTLVGLEQTAESVRL 2013          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L234_9PHAE8.940e-2859.55SpoU_methylase domain-containing protein n=1 Tax=E... [more]
W7U0J8_9STRA6.370e-2049.40Rrna methylase family n=1 Tax=Nannochloropsis gadi... [more]
A0A448ZHP1_9STRA3.740e-1846.99SpoU_methylase domain-containing protein n=1 Tax=P... [more]
UPI001CFEAE412.420e-1748.75uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
D8U9Y0_VOLCA3.500e-1745.00SpoU_methylase domain-containing protein (Fragment... [more]
A0A250XQ49_9CHLO6.190e-1746.25SpoU_methylase domain-containing protein n=1 Tax=C... [more]
A0A835WC66_CHLIN1.150e-1647.50SpoU_methylase domain-containing protein n=1 Tax=C... [more]
A0A6A5C440_NAEFO1.540e-1647.50SpoU_methylase domain-containing protein n=1 Tax=N... [more]
A0A835WST5_9CHLO2.030e-1648.75SpoU_methylase domain-containing protein n=2 Tax=C... [more]
A0A2K3E6I5_CHLRE2.150e-1648.75SpoU_methylase domain-containing protein n=3 Tax=C... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144026contigH-elongata_contig144026:248..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue2.3e-17
Seed eggNOG ortholog35128.Thaps22808
KEGG koko:K15333
EggNOG free text desc.SpoU rRNA Methylase family
EggNOG OGs2XDAQ@2836,COG0566@1,KOG0839@2759
EC2.1.1.34
COG Functional cat.A
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.33003-CDS-H-elongata_contig144026:247..5141622929854.33003-CDS-H-elongata_contig144026:247..514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144026 248..514 +
1691679184.2029114-CDS-H-elongata_contig144026:247..5141691679184.2029114-CDS-H-elongata_contig144026:247..514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144026 248..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144026.3026.1prot_H-elongata_contig144026.3026.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144026 248..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144026.3026.1

>prot_H-elongata_contig144026.3026.1 ID=prot_H-elongata_contig144026.3026.1|Name=mRNA_H-elongata_contig144026.3026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MSFQVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIE
ELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCLAKVKQ*
back to top

mRNA from alignment at H-elongata_contig144026:248..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144026.3026.1 ID=mRNA_H-elongata_contig144026.3026.1|Name=mRNA_H-elongata_contig144026.3026.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig144026:248..514+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTTTCAGGTGCCAAACCTCGCGGGTTTGTCGAGAACTTGTGAGAT ATTCGCCACGTGGAATCTACTCGTCCCTAATCTTTGGGTGCTCAAGAATT CTTCCTTCAATAAGATTTCAACGGGAGCGGAGCAGTGGCTCCCAATCGAA GAGCTACAAGAGAGGCAGTTATTGCCTTGGATCAGACGGTACAAGAAGAT GGGGTACACTGTGATAGGCATCGAGCAGACGAACAACTCGGTTTGCCTTG CCAAGGTAAAACAGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig144026:248..514+

>mRNA_H-elongata_contig144026.3026.1 ID=mRNA_H-elongata_contig144026.3026.1|Name=mRNA_H-elongata_contig144026.3026.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig144026:248..514+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTTTCAGGTGCCAAACCTCGCGGGTTTGTCGAGAACTTGTGAGAT
ATTCGCCACGTGGAATCTACTCGTCCCTAATCTTTGGGTGCTCAAGAATT
CTTCCTTCAATAAGATTTCAACGGGAGCGGAGCAGTGGCTCCCAATCGAA
GAGCTACAAGAGAGGCAGTTATTGCCTTGGATCAGACGGTACAAGAAGAT
GGGGTACACTGTGATAGGCATCGAGCAGACGAACAACTCGGTTTGCCTTG
CCAAGGTAAAACAGTAAATGTCGTTTCAGGTGCCAAACCTCGCGGGTTTG
TCGAGAACTTGTGAGATATTCGCCACGTGGAATCTACTCGTCCCTAATCT
TTGGGTGCTCAAGAATTCTTCCTTCAATAAGATTTCAACGGGAGCGGAGC
AGTGGCTCCCAATCGAAGAGCTACAAGAGAGGCAGTTATTGCCTTGGATC
AGACGGTACAAGAAGATGGGGTACACTGTGATAGGCATCGAGCAGACGAA
CAACTCGGTTTGCCTTGCCAAGGTAAAACAGTAA
back to top