mRNA_H-elongata_contig144026.3026.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A6H5L234_9PHAE (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L234_9PHAE) HSP 1 Score: 114 bits (284), Expect = 8.940e-28 Identity = 53/89 (59.55%), Postives = 70/89 (78.65%), Query Frame = 1
Query: 10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKM-----GYTVIGIEQTNNSVCLAKVK 261
+VPN+AGL+RT EIFA L+VP+L V+K+ +F KISTGAEQWLP+EE+ E QL+ W+RR KK G+ ++GIEQTNNS+CL K+K
Sbjct: 347 KVPNIAGLARTSEIFAATKLVVPDLRVMKSPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKIK 435
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: W7U0J8_9STRA (Rrna methylase family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0J8_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 6.370e-20 Identity = 41/83 (49.40%), Postives = 64/83 (77.11%), Query Frame = 1
Query: 10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCLAKV 258
+VPNLAGL+RTCEIFA L++P++ +L++ F KIS+ A +W+ IEE+ E + +I+R K+ GYT++G+EQT++S CL+ V
Sbjct: 670 RVPNLAGLARTCEIFAVSKLVIPDMRLLRDPLFEKISSSAGRWIKIEEVHEGRTRAYIQRCKQEGYTIVGLEQTDDSFCLSGV 752
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A448ZHP1_9STRA (SpoU_methylase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZHP1_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.740e-18 Identity = 39/83 (46.99%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCLAKV 258
+VPNLAGL+RTCEIFA +L+VP++ V K +F IS GA W+ +EE++E LL W+ K G+ ++G+EQT++S+ L ++
Sbjct: 1765 KVPNLAGLARTCEIFAAQSLVVPDMSVAKMDNFQSISVGAVDWIDMEEVKEEGLLLWLLEKKTEGFWIVGLEQTSSSIPLHQI 1847
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: UPI001CFEAE41 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFEAE41) HSP 1 Score: 85.1 bits (209), Expect = 2.420e-17 Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query: 10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
++PNLAGLSRTCEIFA L++P+L VL+ F IS AE W+P+E Q L ++ + K+ GY ++G+EQT+ SV L
Sbjct: 1816 RIPNLAGLSRTCEIFAAEKLILPHLNVLEMDEFKTISVSAEYWIPVEACQPTDLPQYLLQKKQEGYAIVGLEQTSTSVML 1895
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: D8U9Y0_VOLCA (SpoU_methylase domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U9Y0_VOLCA) HSP 1 Score: 80.5 bits (197), Expect = 3.500e-17 Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query: 10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
++PNLAGL+RTCE+ L++ +L ++ F +S AEQWLP+EE++ LL W+ R GYT++G+EQT SV L
Sbjct: 10 KLPNLAGLARTCEVMGAGRLVLADLAATRDPVFTSVSVTAEQWLPMEEVKPAALLAWLERRAAEGYTLVGLEQTAQSVRL 89
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A250XQ49_9CHLO (SpoU_methylase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XQ49_9CHLO) HSP 1 Score: 84.0 bits (206), Expect = 6.190e-17 Identity = 37/80 (46.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query: 10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
++PNLAGL+RTCE+F L++P++ + + +F+ IS AEQW+P+ E+QE LLPW+ R + GY ++G+EQT S+ L
Sbjct: 2276 KLPNLAGLARTCEVFRASLLVLPDIRLAADPAFSAISVTAEQWVPMTEVQEGALLPWLLRKQAEGYCLLGLEQTAESIRL 2355
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A835WC66_CHLIN (SpoU_methylase domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835WC66_CHLIN) HSP 1 Score: 83.2 bits (204), Expect = 1.150e-16 Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
++PNLAGL+RTCE+ L++ + V ++S F IS AEQWLP+EE++ LL W+ R GYT++G+EQT SV L
Sbjct: 1919 KIPNLAGLARTCEVLGAGRLVLADTTVAQDSLFTSISVTAEQWLPMEEVKPAALLAWLERKAAEGYTLVGLEQTAESVRL 1998
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A6A5C440_NAEFO (SpoU_methylase domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C440_NAEFO) HSP 1 Score: 82.8 bits (203), Expect = 1.540e-16 Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
++PNLAGLSRTCEIFA L++P L VL+ + F IS AE W+P+E L ++ + K+ GY ++G+EQT+ SV L
Sbjct: 837 RIPNLAGLSRTCEIFAAEKLILPYLNVLEMNEFKTISVSAENWIPVEACPPTDLPQYLTQKKQEGYAIVGLEQTSTSVML 916
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A835WST5_9CHLO (SpoU_methylase domain-containing protein n=2 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WST5_9CHLO) HSP 1 Score: 82.4 bits (202), Expect = 2.030e-16 Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query: 10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
+VPNLAGL+RTCE+ L++ + V K+ F IS AEQWLP+EE++ LL W+ R GYT++G+EQT SV L
Sbjct: 405 KVPNLAGLARTCEVLGAGRLVLVDTAVAKDPLFTSISVTAEQWLPMEEVKPAALLAWLERKAAEGYTLVGLEQTAESVRL 484
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Match: A0A2K3E6I5_CHLRE (SpoU_methylase domain-containing protein n=3 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E6I5_CHLRE) HSP 1 Score: 82.4 bits (202), Expect = 2.150e-16 Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query: 10 QVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEELQERQLLPWIRRYKKMGYTVIGIEQTNNSVCL 249
+VPNLAGL+RTCE+ L++ + V K+ F IS AEQWLP+EE++ LL W+ R GYT++G+EQT SV L
Sbjct: 1934 KVPNLAGLARTCEVLGAGRLVLADRAVAKDPLFTSISVTAEQWLPMEEVKPAALLAWLERKAAEGYTLVGLEQTAESVRL 2013 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144026.3026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig144026.3026.1 >prot_H-elongata_contig144026.3026.1 ID=prot_H-elongata_contig144026.3026.1|Name=mRNA_H-elongata_contig144026.3026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp MSFQVPNLAGLSRTCEIFATWNLLVPNLWVLKNSSFNKISTGAEQWLPIEback to top mRNA from alignment at H-elongata_contig144026:248..514+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig144026.3026.1 ID=mRNA_H-elongata_contig144026.3026.1|Name=mRNA_H-elongata_contig144026.3026.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig144026:248..514+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig144026:248..514+ >mRNA_H-elongata_contig144026.3026.1 ID=mRNA_H-elongata_contig144026.3026.1|Name=mRNA_H-elongata_contig144026.3026.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig144026:248..514+ (Himanthalia elongata Himel1 dioecious)back to top |