mRNA_H-elongata_contig143947.3020.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143947.3020.1
Unique NamemRNA_H-elongata_contig143947.3020.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143947.3020.1 vs. uniprot
Match: D8LHY7_ECTSI (Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHY7_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 8.270e-51
Identity = 88/101 (87.13%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:   13 APQEARTLTIRDTGVGMTRAELIGNLGTVARSGTTNFVEALTETGDLGLIGQFGVGFYSVYLVADRVQVISKNNNDEQHVWESTADSTFTVAKDPRGNTLG 315
            A ++ARTLTIRD GVGMT+A+LI NLGTVARSGTTNFVEALTETGDLGLIGQFGVGFYSVYLVAD+VQVISK+N+D+Q+VWESTADSTFTV+KDPRGNTLG
Sbjct:  119 ADKDARTLTIRDAGVGMTKADLISNLGTVARSGTTNFVEALTETGDLGLIGQFGVGFYSVYLVADKVQVISKSNDDDQYVWESTADSTFTVSKDPRGNTLG 219
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BLAST of mRNA_H-elongata_contig143947.3020.1 vs. uniprot
Match: A0A835YKX1_9STRA (Hsp90 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX1_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.070e-45
Identity = 81/101 (80.20%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:   13 APQEARTLTIRDTGVGMTRAELIGNLGTVARSGTTNFVEALTETGDLGLIGQFGVGFYSVYLVADRVQVISKNNNDEQHVWESTADSTFTVAKDPRGNTLG 315
            A +EART+TI DTGVGMTR ELI NLGTVA+SGTTNFVEAL ETGDL LIGQFGVGFYSVYLVAD+VQV+SK+  D+Q++WESTADSTFTV +DPRG+TLG
Sbjct:  113 ADKEARTITIADTGVGMTRQELIANLGTVAKSGTTNFVEALGETGDLSLIGQFGVGFYSVYLVADKVQVVSKHAGDKQYIWESTADSTFTVREDPRGDTLG 213
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BLAST of mRNA_H-elongata_contig143947.3020.1 vs. uniprot
Match: A0A7S3H9E7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9E7_9STRA)

HSP 1 Score: 159 bits (403), Expect = 8.950e-45
Identity = 73/99 (73.74%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:   19 QEARTLTIRDTGVGMTRAELIGNLGTVARSGTTNFVEALTETGDLGLIGQFGVGFYSVYLVADRVQVISKNNNDEQHVWESTADSTFTVAKDPRGNTLG 315
            ++ +TLTIRDTGVGMTR EL+ NLGT+A+SGT  F+E L+E GD+GLIGQFGVGFYSVYLVAD+V+V++KN++DEQ++WESTADS+FT+AKDPRGNTLG
Sbjct:  127 EKLKTLTIRDTGVGMTRNELVNNLGTLAKSGTKKFLETLSEGGDMGLIGQFGVGFYSVYLVADKVRVVTKNHDDEQYIWESTADSSFTIAKDPRGNTLG 225
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BLAST of mRNA_H-elongata_contig143947.3020.1 vs. uniprot
Match: A0A482RV77_9ARCH (Molecular chaperone HtpG n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RV77_9ARCH)

HSP 1 Score: 157 bits (397), Expect = 1.420e-43
Identity = 70/99 (70.71%), Postives = 91/99 (91.92%), Query Frame = 1 
Query:   19 QEARTLTIRDTGVGMTRAELIGNLGTVARSGTTNFVEALTETGDLGLIGQFGVGFYSVYLVADRVQVISKNNNDEQHVWESTADSTFTVAKDPRGNTLG 315
            ++ +T+TIRDTG+GMTR +L+ NLGT+A+SGT  F+E+L+E  D+GLIGQFGVGFYSVYLVAD+V+V++KNN DEQ++WESTADS+FT+AKDPRGNTLG
Sbjct:   61 EKLKTITIRDTGIGMTREDLVNNLGTLAKSGTKKFLESLSEGADIGLIGQFGVGFYSVYLVADKVRVVTKNNEDEQYIWESTADSSFTIAKDPRGNTLG 159
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BLAST of mRNA_H-elongata_contig143947.3020.1 vs. uniprot
Match: A0A7S3LJG6_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3LJG6_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.890e-43
Identity = 77/98 (78.57%), Postives = 86/98 (87.76%), Query Frame = 1 
Query:   22 EARTLTIRDTGVGMTRAELIGNLGTVARSGTTNFVEALTETGDLGLIGQFGVGFYSVYLVADRVQVISKNNNDEQHVWESTADSTFTVAKDPRGNTLG 315
            + RTLTIRD G+GMTR +LI NLGTVA+SGTTNFVE L E GDL LIGQFGVGFYSVYLVAD+VQV SKNNND+Q++W STADSTF+V KDP GNTLG
Sbjct:  105 DERTLTIRDRGIGMTRNDLIENLGTVAKSGTTNFVEQLAEGGDLSLIGQFGVGFYSVYLVADKVQVTSKNNNDDQYIWTSTADSTFSVEKDPEGNTLG 202
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BLAST of mRNA_H-elongata_contig143947.3020.1 vs. uniprot
Match: A0A7S3XYP4_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYP4_HETAK)

HSP 1 Score: 157 bits (398), Expect = 1.130e-42
Identity = 75/100 (75.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:   19 QEARTLTIRDTGVGMTRAELIGNLGTVARSGTTNFVEALTETG-DLGLIGQFGVGFYSVYLVADRVQVISKNNNDEQHVWESTADSTFTVAKDPRGNTLG 315
            +EA+TLTIRDTG+GMT+A+L+ NLGTVA+SGTTNFVEA++  G DL +IGQFGVGFYSVYLVAD+VQV+SK+N+D+Q++WESTADS F VA+DPRGNTLG
Sbjct:  124 KEAQTLTIRDTGIGMTKADLVANLGTVAKSGTTNFVEAMSGGGGDLSMIGQFGVGFYSVYLVADKVQVVSKHNDDDQYLWESTADSNFAVARDPRGNTLG 223
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BLAST of mRNA_H-elongata_contig143947.3020.1 vs. uniprot
Match: A0A7S2RKZ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKZ1_9STRA)

HSP 1 Score: 156 bits (394), Expect = 4.110e-42
Identity = 78/102 (76.47%), Postives = 92/102 (90.20%), Query Frame = 1 
Query:   19 QEARTLTIRDTGVGMTRAELIGNLGTVARSGTTNFVEALTETG---DLGLIGQFGVGFYSVYLVADRVQVISKNNNDEQHVWESTADSTFTVAKDPRGNTLG 315
            ++ARTLTI D+GVGMT+A+LI NLGTVA+SGTTNFVEAL   G   DL LIGQFGVGFYSVYLVAD+V+V SK+N+DEQ+VWESTADSTF++A+DPRGNTLG
Sbjct:  128 KDARTLTITDSGVGMTKADLINNLGTVAKSGTTNFVEALAGGGEGVDLSLIGQFGVGFYSVYLVADKVRVASKHNDDEQYVWESTADSTFSIAQDPRGNTLG 229
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BLAST of mRNA_H-elongata_contig143947.3020.1 vs. uniprot
Match: A0A7R9U2P1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2P1_9STRA)

HSP 1 Score: 155 bits (393), Expect = 5.330e-42
Identity = 75/101 (74.26%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:   13 APQEARTLTIRDTGVGMTRAELIGNLGTVARSGTTNFVEALTETGDLGLIGQFGVGFYSVYLVADRVQVISKNNNDEQHVWESTADSTFTVAKDPRGNTLG 315
            A +EA+TLTIRDTGVGMT+A+LI NLGTVA+SGTTNF EAL+  GD+ LIGQFGVGFYSVYLVADRV+V SK+N+D+QH+WESTADS F V  DP G++LG
Sbjct:  115 ADREAKTLTIRDTGVGMTKADLIANLGTVAKSGTTNFAEALSGEGDISLIGQFGVGFYSVYLVADRVRVRSKHNDDDQHIWESTADSNFYVVADPEGSSLG 215
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BLAST of mRNA_H-elongata_contig143947.3020.1 vs. uniprot
Match: A0A7S2FDD0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDD0_9STRA)

HSP 1 Score: 155 bits (393), Expect = 6.110e-42
Identity = 76/101 (75.25%), Postives = 91/101 (90.10%), Query Frame = 1 
Query:   19 QEARTLTIRDTGVGMTRAELIGNLGTVARSGTTNFVEALTETG--DLGLIGQFGVGFYSVYLVADRVQVISKNNNDEQHVWESTADSTFTVAKDPRGNTLG 315
            ++ARTLTI DTGVGMT+A+L+ NLGTVA+SGTTNFVEAL+  G  DL LIGQFGVGFYSVYLVAD+V+V SKNN+D+Q++WESTADS F +AKDPRGN+LG
Sbjct:  134 KDARTLTIIDTGVGMTKADLVANLGTVAKSGTTNFVEALSGDGGGDLSLIGQFGVGFYSVYLVADKVRVASKNNDDDQYIWESTADSNFVIAKDPRGNSLG 234
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BLAST of mRNA_H-elongata_contig143947.3020.1 vs. uniprot
Match: A0A7S2RBG8_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RBG8_9STRA)

HSP 1 Score: 155 bits (391), Expect = 9.380e-42
Identity = 75/101 (74.26%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:   22 EARTLTIRDTGVGMTRAELIGNLGTVARSGTTNFVEALTETG---DLGLIGQFGVGFYSVYLVADRVQVISKNNNDEQHVWESTADSTFTVAKDPRGNTLG 315
            E +TLTIRDTG+GMT+ +LI NLGTVA+SGTT FVE++T  G   D+ LIGQFGVGFYSVYLVADRV+V SK++NDEQH+WESTADSTFT+ KDPRGN+LG
Sbjct:   99 EEKTLTIRDTGIGMTKEDLIENLGTVAKSGTTQFVESMTSGGSDADMSLIGQFGVGFYSVYLVADRVRVTSKHHNDEQHIWESTADSTFTIEKDPRGNSLG 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143947.3020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHY7_ECTSI8.270e-5187.13Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835YKX1_9STRA2.070e-4580.20Hsp90 protein-domain-containing protein n=1 Tax=Tr... [more]
A0A7S3H9E7_9STRA8.950e-4573.74Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482RV77_9ARCH1.420e-4370.71Molecular chaperone HtpG n=1 Tax=archaeon TaxID=19... [more]
A0A7S3LJG6_9STRA3.890e-4378.57Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S3XYP4_HETAK1.130e-4275.00Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S2RKZ1_9STRA4.110e-4276.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9U2P1_9STRA5.330e-4274.26Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2FDD0_9STRA6.110e-4275.25Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2RBG8_9STRA9.380e-4274.26Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143947contigH-elongata_contig143947:618..1223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2.4e-37
Seed eggNOG ortholog115417.EPrPW00000014024
Preferred nameHSP90B
KEGG koko:K04079,ko:K09487
KEGG Pathwayko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko04918,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map04918,map05200,map05215,map05418
GOsGO:0001101,GO:0002790,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005788,GO:0005886,GO:0005911,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006950,GO:0006970,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009306,GO:0009409,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009888,GO:0009934,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010073,GO:0010075,GO:0010243,GO:0010498,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0019941,GO:0022603,GO:0030054,GO:0030163,GO:0030433,GO:0031090,GO:0031974,GO:0032501,GO:0032502,GO:0032940,GO:0033036,GO:0033554,GO:0034976,GO:0036503,GO:0040008,GO:0042221,GO:0042886,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046686,GO:0046903,GO:0048046,GO:0048507,GO:0048509,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051716,GO:0055044,GO:0065007,GO:0070013,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098588,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700
EggNOG free text desc.Heat shock protein 90. Source PGD
EggNOG OGs1MD66@121069,COG0326@1,KOG0020@2759
Ec32 ortholog descriptionHeat shock protein 90
Ec32 orthologEc-18_001040.1
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929853.5555918-CDS-H-elongata_contig143947:617..8331622929853.5555918-CDS-H-elongata_contig143947:617..833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143947 618..833 +
1691679183.8418164-CDS-H-elongata_contig143947:617..8331691679183.8418164-CDS-H-elongata_contig143947:617..833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143947 618..833 +
1622929853.5720627-CDS-H-elongata_contig143947:1118..12231622929853.5720627-CDS-H-elongata_contig143947:1118..1223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143947 1119..1223 +
1691679183.8663309-CDS-H-elongata_contig143947:1118..12231691679183.8663309-CDS-H-elongata_contig143947:1118..1223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143947 1119..1223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143947.3020.1prot_H-elongata_contig143947.3020.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143947 618..1223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143947.3020.1

>prot_H-elongata_contig143947.3020.1 ID=prot_H-elongata_contig143947.3020.1|Name=mRNA_H-elongata_contig143947.3020.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MLLLAPQEARTLTIRDTGVGMTRAELIGNLGTVARSGTTNFVEALTETGD
LGLIGQFGVGFYSVYLVADRVQVISKNNNDEQHVWESTADSTFTVAKDPR
GNTLGE*
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mRNA from alignment at H-elongata_contig143947:618..1223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143947.3020.1 ID=mRNA_H-elongata_contig143947.3020.1|Name=mRNA_H-elongata_contig143947.3020.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig143947:618..1223+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTTGCTTGCGCCGCAGGAAGCGCGCACGCTCACCATCCGAGACAC
GGGCGTGGGTATGACCCGTGCAGAGCTGATCGGAAATCTCGGCACCGTGG
CCCGATCCGGTACGACGAACTTTGTGGAGGCCCTGACGGAGACGGGCGAC
CTCGGCCTCATCGGACAGTTTGGTGTAGGGTTCTACTCCGTTTACCTGGT
GGCCGACAGGGTTCAGGTATATACCATGCGATCCAACCCAAGGTTTATTA
TAATAACAAGTCACGGAGTTCGATACTAGCGGCGTGTTACCGCAGGAAGA
TCGCGATGGGGGGAGCGCAAGATATTGCGGGGGAGCGTCTTCCAATTTAT
AAAACAAATGGTCAGCCCCCTTTTGAGATTCGATGCATTTTTCGTACATG
CTTCCAAAATCGAACCGAAACTATTCACGGGGTTGAGCTCGCGCGTCCCT
CTTTTTTTATTTTTTTTTCCGCTCGCGTTCGACGAAAACGACTTCCACCA
GGTGATCTCGAAGAACAACAATGACGAGCAGCACGTGTGGGAGTCCACCG
CCGATAGCACTTTCACCGTCGCCAAGGATCCCCGAGGAAATACTCTGGGT
GAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig143947:618..1223+

>mRNA_H-elongata_contig143947.3020.1 ID=mRNA_H-elongata_contig143947.3020.1|Name=mRNA_H-elongata_contig143947.3020.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig143947:618..1223+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTTGCTTGCGCCGCAGGAAGCGCGCACGCTCACCATCCGAGACAC
GGGCGTGGGTATGACCCGTGCAGAGCTGATCGGAAATCTCGGCACCGTGG
CCCGATCCGGTACGACGAACTTTGTGGAGGCCCTGACGGAGACGGGCGAC
CTCGGCCTCATCGGACAGTTTGGTGTAGGGTTCTACTCCGTTTACCTGGT
GGCCGACAGGGTTCAGATGTTGTTGCTTGCGCCGCAGGAAGCGCGCACGC
TCACCATCCGAGACACGGGCGTGGGTATGACCCGTGCAGAGCTGATCGGA
AATCTCGGCACCGTGGCCCGATCCGGTACGACGAACTTTGTGGAGGCCCT
GACGGAGACGGGCGACCTCGGCCTCATCGGACAGTTTGGTGTAGGGTTCT
ACTCCGTTTACCTGGTGGCCGACAGGGTTCAGGTGATCTCGAAGAACAAC
AATGACGAGCAGCACGTGTGGGAGTCCACCGCCGATAGCACTTTCACCGT
CGCCAAGGATCCCCGAGGAAATACTCTGGGTGAGTGAGTGATCTCGAAGA
ACAACAATGACGAGCAGCACGTGTGGGAGTCCACCGCCGATAGCACTTTC
ACCGTCGCCAAGGATCCCCGAGGAAATACTCTGGGTGAGTGA
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