mRNA_H-elongata_contig143869.3016.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143869.3016.1
Unique NamemRNA_H-elongata_contig143869.3016.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143869.3016.1 vs. uniprot
Match: D8LD99_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD99_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.400e-36
Identity = 126/320 (39.38%), Postives = 159/320 (49.69%), Query Frame = 1 
Query:   13 LGASVLLTDQAKLLPTLFNNARSNAANLELRSSWPSSPPSXXXSAETHFPPSQRSSTTGGESERSKGANS--SFAACAGIVDTSS--RKNASLQIHGDDDA---------SRVGGTAVGAKERGISEGAQEEEAGIRQADGXXXXXXXSDHEPGGTWRAAELLFSRNEDEVLR--SAAAGWGVEEDGNTSPP---PRISGESGFFDLVVAADVVYLHDLWDAMASTIKALLKPTGEALVTFEQRRSSVDDFFGPPRFGYSDADXXXXXXXQAHHCDDCWERGREVDLERDVVARERGLGNAARAARVRLFRMTRRTFSGG 918
            LGA   L   +KLLPTL  NAR+NA +LE     P++P S   ++           +T  ES+ +    +  S A   G  +     RK+A  +  GDD+          S V   A    +R +S         +   DG             G WR  ELLFS +E+++LR    A G G       + P   P      G FDLVVAADVVYL+DLWDAMA TIKAL KP+GEAL+TFEQRR +VD FFGPPRFG  +                CW  G EVD    V A E  L +AA+AARVR++RM RR+ SGG
Sbjct:   70 LGAGTGLAGLSKLLPTLIANARANAQDLEYSRQPPTTPGSRDGTSTLPCDEPADVLSTPPESDNTCSVTTTPSIAKDGGKAEDVPVCRKSARRRKGGDDEGLNQVDAPKDSTVNVAASKPDDRELS-------TTMCCLDGGGIK---------GCWRVVELLFSESEEKLLRWRRMADGGGTTGGPLRAVPEGDPEGDSHDGLFDLVVAADVVYLNDLWDAMAFTIKALTKPSGEALMTFEQRRGNVDGFFGPPRFGGEETGC-------------CWGHGEEVDFAEGVDAGE-VLRDAAKAARVRMYRM-RRSGSGG 358
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143869.3016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD99_ECTSI1.400e-3639.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143869contigH-elongata_contig143869:74..1452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size921
Cds size921
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143869.3016.1prot_H-elongata_contig143869.3016.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143869 74..1452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929853.0813797-CDS-H-elongata_contig143869:73..4641622929853.0813797-CDS-H-elongata_contig143869:73..464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143869 74..464 +
1691679183.7453628-CDS-H-elongata_contig143869:73..4641691679183.7453628-CDS-H-elongata_contig143869:73..464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143869 74..464 +
1622929853.097514-CDS-H-elongata_contig143869:518..7691622929853.097514-CDS-H-elongata_contig143869:518..769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143869 519..769 +
1691679183.7534616-CDS-H-elongata_contig143869:518..7691691679183.7534616-CDS-H-elongata_contig143869:518..769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143869 519..769 +
1622929853.1118143-CDS-H-elongata_contig143869:1173..14521622929853.1118143-CDS-H-elongata_contig143869:1173..1452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143869 1174..1452 +
1691679183.7616787-CDS-H-elongata_contig143869:1173..14521691679183.7616787-CDS-H-elongata_contig143869:1173..1452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143869 1174..1452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143869.3016.1

>prot_H-elongata_contig143869.3016.1 ID=prot_H-elongata_contig143869.3016.1|Name=mRNA_H-elongata_contig143869.3016.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=307bp
VAARLGASVLLTDQAKLLPTLFNNARSNAANLELRSSWPSSPPSPPPSAE
THFPPSQRSSTTGGESERSKGANSSFAACAGIVDTSSRKNASLQIHGDDD
ASRVGGTAVGAKERGISEGAQEEEAGIRQADGDGDGNGNSDHEPGGTWRA
AELLFSRNEDEVLRSAAAGWGVEEDGNTSPPPRISGESGFFDLVVAADVV
YLHDLWDAMASTIKALLKPTGEALVTFEQRRSSVDDFFGPPRFGYSDADD
DDDNHQQAHHCDDCWERGREVDLERDVVARERGLGNAARAARVRLFRMTR
RTFSGG*
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mRNA from alignment at H-elongata_contig143869:74..1452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143869.3016.1 ID=mRNA_H-elongata_contig143869.3016.1|Name=mRNA_H-elongata_contig143869.3016.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1379bp|location=Sequence derived from alignment at H-elongata_contig143869:74..1452+ (Himanthalia elongata Himel1 dioecious)
GTTGCGGCGAGGCTCGGCGCTTCCGTTCTCCTGACAGACCAGGCGAAGCT
TCTGCCCACACTCTTCAACAACGCGCGTTCTAACGCCGCGAATCTCGAGC
TCCGGTCCTCGTGGCCGTCATCACCACCGTCACCGCCCCCTTCTGCGGAA
ACCCATTTCCCGCCGTCGCAGCGTTCCTCGACCACGGGCGGCGAAAGCGA
ACGATCAAAGGGCGCCAACTCTTCATTCGCTGCTTGCGCTGGGATCGTGG
ATACATCGAGTCGGAAAAACGCCTCCTTACAAATACATGGCGATGATGAC
GCCTCTCGTGTCGGCGGCACCGCCGTCGGGGCGAAGGAGAGGGGCATCTC
CGAGGGGGCTCAGGAGGAGGAAGCTGGGATACGCCAGGCCGGTGGTGGGA
GCGATGAGGAGCTATGGCGATGGTGGCCACTGCGGCGTTCTGGAGATGGC
GATGGAGATGGAAATGGAAATAGCGATCATGAGCCTGGCGGGACTTGGCG
GGCGGCGGAGCTACTGTTCTCACGGAACGAAGATGAGGTTCTGCGGAGCG
CGGCTGCGGGGTGGGGAGTCGAGGAAGATGGAAATACATCCCCGCCGCCC
CGCATTTCCGGCGAAAGCGGCTTTTTCGACCTGGTAGTAGCGGCGGACGT
TGTTTACCTCCACGACTTGTGGGACGCCATGGCCAGTACCATCAAGGTAC
ACAGCTGTACGGAGGCGGTGATGTTGTTGTTGTTGTTTTTGTTGATGTTT
TCGACCGCTTTTGGGTAATCACAAATGACCACACCTTTCCCCCCCTCCCC
CCCCCCCCCCCCCCCCCCCCACACATACCCGCGCGCGGACCCCCCCCCTC
CCCCTTCTCGCTCCCTTCNNNNNNNNNNTTTTTCCGCCCCCTTTTGGCGA
TCCCCAAAGACCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGAAAA
TCCAACATGAGCGGGTGAGTCCCGTCCCTTCCCTGTATTTTCGTTCGCAC
CATATAATAGATATGTGTACCACATTGCTTTTTCCATCTCTCCTGTATAT
TTCTGTCCTTATTTGTCTATTGTGTAATCTCGGTCATGACGTCATTACAG
GCTTTACTCAAGCCCACGGGCGAGGCCCTCGTGACCTTTGAGCAGCGGAG
GAGCAGCGTGGACGATTTTTTCGGTCCTCCGAGATTCGGTTACTCCGATG
CCGATGACGATGACGATAATCACCAGCAGGCCCACCATTGCGACGACTGC
TGGGAACGGGGACGGGAGGTCGATCTGGAGAGAGATGTCGTTGCGAGGGA
ACGGGGTCTCGGGAACGCGGCGAGAGCCGCACGCGTCCGGCTCTTCCGGA
TGACGCGTAGGACGTTCTCGGGGGGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig143869:74..1452+

>mRNA_H-elongata_contig143869.3016.1 ID=mRNA_H-elongata_contig143869.3016.1|Name=mRNA_H-elongata_contig143869.3016.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1842bp|location=Sequence derived from alignment at H-elongata_contig143869:74..1452+ (Himanthalia elongata Himel1 dioecious)
GTTGCGGCGAGGCTCGGCGCTTCCGTTCTCCTGACAGACCAGGCGAAGCT
TCTGCCCACACTCTTCAACAACGCGCGTTCTAACGCCGCGAATCTCGAGC
TCCGGTCCTCGTGGCCGTCATCACCACCGTCACCGCCCCCTTCTGCGGAA
ACCCATTTCCCGCCGTCGCAGCGTTCCTCGACCACGGGCGGCGAAAGCGA
ACGATCAAAGGGCGCCAACTCTTCATTCGCTGCTTGCGCTGGGATCGTGG
ATACATCGAGTCGGAAAAACGCCTCCTTACAAATACATGGCGATGATGAC
GCCTCTCGTGTCGGCGGCACCGCCGTCGGGGCGAAGGAGAGGGGCATCTC
CGAGGGGGCTCAGGAGGAGGAAGCTGGGATACGCCAGGCCGGTTGCGGCG
AGGCTCGGCGCTTCCGTTCTCCTGACAGACCAGGCGAAGCTTCTGCCCAC
ACTCTTCAACAACGCGCGTTCTAACGCCGCGAATCTCGAGCTCCGGTCCT
CGTGGCCGTCATCACCACCGTCACCGCCCCCTTCTGCGGAAACCCATTTC
CCGCCGTCGCAGCGTTCCTCGACCACGGGCGGCGAAAGCGAACGATCAAA
GGGCGCCAACTCTTCATTCGCTGCTTGCGCTGGGATCGTGGATACATCGA
GTCGGAAAAACGCCTCCTTACAAATACATGGCGATGATGACGCCTCTCGT
GTCGGCGGCACCGCCGTCGGGGCGAAGGAGAGGGGCATCTCCGAGGGGGC
TCAGGAGGAGGAAGCTGGGATACGCCAGGCCGATGGCGATGGAGATGGAA
ATGGAAATAGCGATCATGAGCCTGGCGGGACTTGGCGGGCGGCGGAGCTA
CTGTTCTCACGGAACGAAGATGAGGTTCTGCGGAGCGCGGCTGCGGGGTG
GGGAGTCGAGGAAGATGGAAATACATCCCCGCCGCCCCGCATTTCCGGCG
AAAGCGGCTTTTTCGACCTGGTAGTAGCGGCGGACGTTGTTTACCTCCAC
GACTTGTGGGACGCCATGGCCAGTACCATCAAGATGGCGATGGAGATGGA
AATGGAAATAGCGATCATGAGCCTGGCGGGACTTGGCGGGCGGCGGAGCT
ACTGTTCTCACGGAACGAAGATGAGGTTCTGCGGAGCGCGGCTGCGGGGT
GGGGAGTCGAGGAAGATGGAAATACATCCCCGCCGCCCCGCATTTCCGGC
GAAAGCGGCTTTTTCGACCTGGTAGTAGCGGCGGACGTTGTTTACCTCCA
CGACTTGTGGGACGCCATGGCCAGTACCATCAAGGCTTTACTCAAGCCCA
CGGGCGAGGCCCTCGTGACCTTTGAGCAGCGGAGGAGCAGCGTGGACGAT
TTTTTCGGTCCTCCGAGATTCGGTTACTCCGATGCCGATGACGATGACGA
TAATCACCAGCAGGCCCACCATTGCGACGACTGCTGGGAACGGGGACGGG
AGGTCGATCTGGAGAGAGATGTCGTTGCGAGGGAACGGGGTCTCGGGAAC
GCGGCGAGAGCCGCACGCGTCCGGCTCTTCCGGATGACGCGTAGGACGTT
CTCGGGGGGCTGAGCTTTACTCAAGCCCACGGGCGAGGCCCTCGTGACCT
TTGAGCAGCGGAGGAGCAGCGTGGACGATTTTTTCGGTCCTCCGAGATTC
GGTTACTCCGATGCCGATGACGATGACGATAATCACCAGCAGGCCCACCA
TTGCGACGACTGCTGGGAACGGGGACGGGAGGTCGATCTGGAGAGAGATG
TCGTTGCGAGGGAACGGGGTCTCGGGAACGCGGCGAGAGCCGCACGCGTC
CGGCTCTTCCGGATGACGCGTAGGACGTTCTCGGGGGGCTGA
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