mRNA_H-elongata_contig143855.3014.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143855.3014.1
Unique NamemRNA_H-elongata_contig143855.3014.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig143855.3014.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 3.990e-114
Identity = 172/254 (67.72%), Postives = 201/254 (79.13%), Query Frame = 1
Query:    1 IVFGTVKKLRKALLERAGKIFAERNSCASDVLPVNGEELSSEQLESVTAEVFQELNNMDQTPVQHEMLVETTLEKRGAKDARISTGGESIAAEQEKERFTLCLAVMADVSKVPLRIIFKGMPSNPPNKPRKGKITEPRKGSIAAEVASGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESWKLRPNNGSIITQRPSILVLGDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLNRMLNKQMKRLLRG 762
            + + T+ KLR+AL+ERA +I+A RN  A    P+ GE+L+SEQLESVTAEVF EL NMDQTPVQHEM VET+LEK GAKDARI+TGG      +EKERFTLCLAV  D  KVPLR IFKG P  PP++P KGK T+PRK SIA E+   NR+K G+P  GMSFGVQE SWCD REC LWI  SW LRPNNGS++ QRP ILVL DFKCH+D+ FIA+L+++ NT VI IPGGLTPLLQPL+RMLNK+MKRLLRG
Sbjct:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGG------KEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRG 248          
BLAST of mRNA_H-elongata_contig143855.3014.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 6.970e-106
Identity = 173/254 (68.11%), Postives = 194/254 (76.38%), Query Frame = 1
Query:    1 IVFGTVKKLRKALLERAGKIFAERNSCASDVLPVNGEELSSEQLESVTAEVFQELNNMDQTPVQHEMLVETTLEKRGAKDARISTGGESIAAEQEKERFTLCLAVMADVSKVPLRIIFKGMPSNPPNKPRKGKITEPRKGSIAAEVASGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESWKLRPNNGSIITQRPSILVLGDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLNRMLNKQMKRLLRG 762
            + + TV KLR+AL+ RAG+I+A R+  A D  P+ GE+L+ EQL SV AEVF+EL NMDQTPVQHEM VETTLEK GAKDARISTGG      +EKERFTL LAVMAD  KV  RIIFKG P  PP    KGK T PRK S+A E+   NR K  HPA GMSFGVQE SW D REC  WIS SWKLRPNNGSI+ QRP ILVL DFKCH+DE +IA L++  NT VI+IPGGLTPLLQPL+RMLNKQMKRLLRG
Sbjct:   63 MAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGG------KEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRG 310          
BLAST of mRNA_H-elongata_contig143855.3014.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 1.070e-105
Identity = 173/253 (68.38%), Postives = 194/253 (76.68%), Query Frame = 1
Query:    1 IVFGTVKKLRKALLERAGKIFAERNSCASDVLPVNGEELSSEQLESVTAEVFQELNNMDQTPVQHEMLVETTLEKRGAKDARISTGGESIAAEQEKERFTLCLAVMADVSKVPLRIIFKGMPSNPPNKPRKGKITEPRKGSIAAEVASGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESWKLRPNNGSIITQRPSILVLGDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLNRMLNKQMKRLLR 759
            + + TV KLR+AL++RAG+I+A R+  A D  P+ GE+L+SEQL SV AEVF+EL NMDQTPVQHE+ VETTLEK GAKDARISTGG      +EKERFTL LAVMAD  KV  RIIFKG P  PP    KGK T PRK S+A E+   NR K GHPA GMSFGVQE SW D REC  WIS SWKLRPNNGSI+ QRP ILVL DFKCH+DE FIA L++  NT VI IPG LTPLLQPL+RMLNKQMKRLLR
Sbjct:   63 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGG------KEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLR 309          
BLAST of mRNA_H-elongata_contig143855.3014.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 334 bits (856), Expect = 9.880e-104
Identity = 173/254 (68.11%), Postives = 202/254 (79.53%), Query Frame = 1
Query:    1 IVFGTVKKLRKALLERAGKIFAERNSCASDVLPVNGEELSSEQLESVTAEVFQELNNMDQTPVQHEMLVETTLEKRGAKDARISTGGESIAAEQEKERFTLCLAVMADVSKVPLRIIFKGMPSNPPNKPRKGKITEPRKGSIAAEVASGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESWKLRPNNGSIITQRPSILVLGDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLNRMLNKQMKRLLRG 762
            + F T+ KLR ALLERAG+I+A RN  AS   P+ G++L+  QLESV A+VF+EL NMDQTPVQ EM VETTLEKRG KDARISTGG      +EK+RFT CLAVMAD  KVP RIIFKG P  PP+   + K T+ RKG IAAEV   NRTKFG+P +GM F VQE SWCDARECTLW+SESW+ RPN+GS+I QR SILVL DF+CHR E+F+ DLR+R NT+VILIPGGLTPLLQPL+RMLNK+MKRL+RG
Sbjct:  132 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGG------KEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379          
BLAST of mRNA_H-elongata_contig143855.3014.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 2.120e-103
Identity = 170/249 (68.27%), Postives = 189/249 (75.90%), Query Frame = 1
Query:   16 VKKLRKALLERAGKIFAERNSCASDVLPVNGEELSSEQLESVTAEVFQELNNMDQTPVQHEMLVETTLEKRGAKDARISTGGESIAAEQEKERFTLCLAVMADVSKVPLRIIFKGMPSNPPNKPRKGKITEPRKGSIAAEVASGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESWKLRPNNGSIITQRPSILVLGDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLNRMLNKQMKRLLRG 762
            V KLR+AL++RAG+I+A R+  A D  P+ GE+L+SEQL SV AEVF++L NMDQTPVQHEM VETTLEK GAKDAR+STGGE      EKERFTL LAV AD  KV LRIIF G P  PP    KGK T PRK S+A E+   NR K GHPA GMSFGVQE SW D REC  W S SWKLRPNNGSI+ QRP ILVL DFKCH+DE FIA L++  NT VI IPGGLTPLLQPL+RMLNKQ KRLLR 
Sbjct:    2 VMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGE------EKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRS 244          
BLAST of mRNA_H-elongata_contig143855.3014.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 7.190e-103
Identity = 172/274 (62.77%), Postives = 197/274 (71.90%), Query Frame = 1
Query:    1 IVFGTVKKLRKALLERAGKIFAERNSCASDVLPVNGEELSSEQLESVTAEVFQELNNMDQTPVQHEMLVETTLEKRGAKDARISTGGESIAAE--------------------QEKERFTLCLAVMADVSKVPLRIIFKGMPSNPPNKPRKGKITEPRKGSIAAEVASGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESWKLRPNNGSIITQRPSILVLGDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLNRMLNKQMKRLLRG 762
            + + T+ KLRKALLERAG+I+A+R   A    P+ GE+LSS QLE VT E+F++L NMDQTPVQ+EM VETTLEK GAKDARI+TG                           +EKERFTLCLAV AD +KVPLRIIFKG P  PP  P KGK T+PRK SIA EV   NR+K G P  GMSFGVQE SWCD RE  LWI +SWKLRPNNGS++ QR  ILVL DFKCH+D+ FIA L++  NT VI IPGGLTPLLQPL+RMLNKQMKRLLRG
Sbjct:  150 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRG 423          
BLAST of mRNA_H-elongata_contig143855.3014.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 1.120e-102
Identity = 174/254 (68.50%), Postives = 195/254 (76.77%), Query Frame = 1
Query:    1 IVFGTVKKLRKALLERAGKIFAERNSCASDVLPVNGEELSSEQLESVTAEVFQELNNMDQTPVQHEMLVETTLEKRGAKDARISTGGESIAAEQEKERFTLCLAVMADVSKVPLRIIFKGMPSNPPNKPRKGKITEPRKGSIAAEVASGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESWKLRPNNGSIITQRPSILVLGDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLNRMLNKQMKRLLRG 762
            + + T+ KLRKALLERAG+I+A+R   A    P+ GE+LSS QLE VT E+F+EL NMDQTPVQHEM VETTLE  GAKDARI+TGG      +EKERFTLCLAV AD  KVPLRIIFKG P  PP  P KGK T+PRK SIA EV   NR+K G P  GMSFGVQE SWCD REC LWI +SWKLRPNNGSI+ QR  ILVL DFKCH+D+ FIA L++  NT VI IPGGL PL QPL+RMLNKQMKRLLRG
Sbjct:  217 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGG------KEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRG 464          
BLAST of mRNA_H-elongata_contig143855.3014.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 6.930e-100
Identity = 169/254 (66.54%), Postives = 191/254 (75.20%), Query Frame = 1
Query:    1 IVFGTVKKLRKALLERAGKIFAERNSCASDVLPVNGEELSSEQLESVTAEVFQELNNMDQTPVQHEMLVETTLEKRGAKDARISTGGESIAAEQEKERFTLCLAVMADVSKVPLRIIFKGMPSNPPNKPRKGKITEPRKGSIAAEVASGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESWKLRPNNGSIITQRPSILVLGDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLNRMLNKQMKRLLRG 762
            + + TV KL +AL++RAG+I+A R+  A D  P+ GE+L+SEQL SV AEVF+E+ NMDQ PVQHEM VETTL+K GAKDARISTGG +     EKERFTL LAV AD  KV  RIIF+G P  PP    KGK T PRK  +A E+   NR K GHPA GMSFGVQE SW D REC  WIS SWKLRPNNGSI+ QRP ILVL DFKCH DE FIA L++  NT VI IPGGLTPLLQPL+RMLNKQMKRLLRG
Sbjct:  257 MAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGN-----EKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRG 505          
BLAST of mRNA_H-elongata_contig143855.3014.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 5.290e-99
Identity = 169/253 (66.80%), Postives = 192/253 (75.89%), Query Frame = 1
Query:    1 IVFGTVKKLRKALLERAGKIFAERNSCASDVLPVNGEELSSEQLESVTAEVFQELNNMDQTPVQHEMLVETTLEKRGAKDARISTGGESIAAEQEKERFTLCLAVMADVSKVPLRIIFKGMPSNPPNKPRKGKITEPRKGSIAAEVASGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESWKLRPNNGSIITQRPSILVLGDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLNRMLNKQMKRLLR 759
            + F T+ KLR ALLERAG+I+A RN  AS   P+ G++LS  QLESV  EVF+EL NMDQTPVQ EM VETTLEK GAKDARISTGG      +EKERFTLCLAVMAD  KVPLRIIFKG P  PP+  R+GK T+PRKGSIAAEV   N+T FG+P +GMSFGVQE SW DA ECTLW+SESW  RPN+GS+I QR SILVL DF              R NT+VILIPGGLTPLLQPL+RML+K+MKRL+R
Sbjct:  236 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGG------KEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIKQRHSILVLDDF--------------RTNTTVILIPGGLTPLLQPLDRMLDKEMKRLMR 468          
BLAST of mRNA_H-elongata_contig143855.3014.1 vs. uniprot
Match: A0A6H5JB72_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB72_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 1.870e-96
Identity = 173/310 (55.81%), Postives = 199/310 (64.19%), Query Frame = 1
Query:    1 IVFGTVKKLRKALLERAGKIFAERNSCASDVLPVNGEELSSEQLESVTAEVFQELNNMDQTPVQHEMLVETTLEKRGAKDARISTGGE----------------------------------------------SIAAEQ----------EKERFTLCLAVMADVSKVPLRIIFKGMPSNPPNKPRKGKITEPRKGSIAAEVASGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESWKLRPNNGSIITQRPSILVLGDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLNRMLNKQMKRLLRG 762
            + F T+ KLR ALLERAG+I+A R+  A D  P+ G++LS  QLESV AEVF+EL NMDQTPVQ EM VETTLEKRGAKDARISTGG+                                              SIAAE            K+RFTLCLAVMAD  KVPL+IIFKG P  PP+   +G+ T+PRKGSIAAE    NRTKFG+P +GMSFGVQE +WCDAREC LW+SESW              SILVL DF+CHR E+FI DLR+R NT VILIPGGLTPL QPL+RMLNK+MKRL+RG
Sbjct:  158 LAFATLMKLRTALLERAGEIYARRHPPAPDESPIKGKDLSPAQLESVAAEVFEELGNMDQTPVQQEMPVETTLEKRGAKDARISTGGKEKDRFTLCLAVMADGGKVPLQIIFKGKPFIPPSTAGRGRNTQPRKGSIAAESLPANRTKFGYPKDRFTLCLAVMADGGKVPLQIIFKGKPFIPPSTAGRGRNTQPRKGSIAAESLPANRTKFGYPVSGMSFGVQEKNWCDARECILWLSESW--------------SILVLDDFRCHRSESFIEDLRRRTNTIVILIPGGLTPLFQPLDRMLNKEMKRLMRG 453          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143855.3014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI3.990e-11467.72DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE6.970e-10668.11DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.070e-10568.38DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE9.880e-10468.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KII4_9PHAE2.120e-10368.27DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE7.190e-10362.77DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE1.120e-10268.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHT8_9PHAE6.930e-10066.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM5_9PHAE5.290e-9966.80DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JB72_9PHAE1.870e-9655.81DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143855contigH-elongata_contig143855:735..1661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.4
Seed ortholog evalue5.7e-90
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size762
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.8987837-CDS-H-elongata_contig143855:734..10121622929852.8987837-CDS-H-elongata_contig143855:734..1012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143855 735..1012 +
1691679183.699179-CDS-H-elongata_contig143855:734..10121691679183.699179-CDS-H-elongata_contig143855:734..1012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143855 735..1012 +
1622929852.914669-CDS-H-elongata_contig143855:1177..16611622929852.914669-CDS-H-elongata_contig143855:1177..1661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143855 1178..1661 +
1691679183.7140012-CDS-H-elongata_contig143855:1177..16611691679183.7140012-CDS-H-elongata_contig143855:1177..1661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143855 1178..1661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143855.3014.1prot_H-elongata_contig143855.3014.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143855 735..1661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143855.3014.1

>prot_H-elongata_contig143855.3014.1 ID=prot_H-elongata_contig143855.3014.1|Name=mRNA_H-elongata_contig143855.3014.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
IVFGTVKKLRKALLERAGKIFAERNSCASDVLPVNGEELSSEQLESVTAE
VFQELNNMDQTPVQHEMLVETTLEKRGAKDARISTGGESIAAEQEKERFT
LCLAVMADVSKVPLRIIFKGMPSNPPNKPRKGKITEPRKGSIAAEVASGN
RTKFGHPAAGMSFGVQENSWCDARECTLWISESWKLRPNNGSIITQRPSI
LVLGDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLNRMLNKQMKR
LLRG
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mRNA from alignment at H-elongata_contig143855:735..1661+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143855.3014.1 ID=mRNA_H-elongata_contig143855.3014.1|Name=mRNA_H-elongata_contig143855.3014.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=927bp|location=Sequence derived from alignment at H-elongata_contig143855:735..1661+ (Himanthalia elongata Himel1 dioecious)
ATTGTGTTTGGAACAGTGAAGAAGCTTCGGAAGGCTCTCCTGGAGCGCGC TGGCAAAATCTTCGCTGAGCGCAACTCGTGTGCTTCTGATGTGCTCCCCG TGAATGGGGAGGAGCTGAGTTCCGAGCAACTGGAGTCGGTGACGGCGGAG GTCTTCCAAGAACTCAACAATATGGACCAGACGCCTGTCCAGCACGAGAT GCTGGTGGAGACAACTCTGGAGAAGCGTGGGGCGAAGGATGCTCGCATCA GCACAGGAGGTGAGAGTATTGCGGCTGAGTGCTTGTCGATAGTATGTATT TCGCATCGTTTTAGTGTTTTTTTCTCTAGATGATAGGTATGTTTGGCACC GTAAAATGCCCCCGCATCGCGAATACGAAGTATAAATCAAAACACGCAAC TGTAACCCCCTCCCGCCCTCTCTTTGTTTCGATTCCCACGTAGGCAGGAG AAGGAGCGCTTCACTCTCTGTCTTGCTGTCATGGCGGATGTCAGCAAGGT TCCGCTACGCATCATCTTCAAAGGCATGCCGTCCAACCCGCCGAACAAGC CGAGGAAGGGCAAGATAACTGAGCCGCGAAAGGGGTCCATCGCGGCAGAG GTTGCCTCTGGGAATCGTACGAAGTTTGGGCACCCCGCGGCAGGCATGTC GTTTGGTGTGCAGGAGAATAGCTGGTGTGACGCGCGGGAGTGCACCCTTT GGATCTCGGAGAGCTGGAAGCTTCGCCCCAACAACGGAAGCATCATCACG CAGCGCCCGAGTATCCTGGTGTTAGGCGACTTCAAGTGCCACCGTGACGA GGCCTTCATCGCTGACCTCCGGAAGAGGTGTAACACCAGCGTCATCCTGA TCCCGGGCGGGTTGACTCCTCTCCTCCAGCCACTGAACCGCATGCTCAAC AAGCAGATGAAGCGGCTACTTCGGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig143855:735..1661+

>mRNA_H-elongata_contig143855.3014.1 ID=mRNA_H-elongata_contig143855.3014.1|Name=mRNA_H-elongata_contig143855.3014.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig143855:735..1661+ (Himanthalia elongata Himel1 dioecious)
ATTGTGTTTGGAACAGTGAAGAAGCTTCGGAAGGCTCTCCTGGAGCGCGC
TGGCAAAATCTTCGCTGAGCGCAACTCGTGTGCTTCTGATGTGCTCCCCG
TGAATGGGGAGGAGCTGAGTTCCGAGCAACTGGAGTCGGTGACGGCGGAG
GTCTTCCAAGAACTCAACAATATGGACCAGACGCCTGTCCAGCACGAGAT
GCTGGTGGAGACAACTCTGGAGAAGCGTGGGGCGAAGGATGCTCGCATCA
GCACAGGAGGTGAGAGTATTGCGGCTGAATTGTGTTTGGAACAGTGAAGA
AGCTTCGGAAGGCTCTCCTGGAGCGCGCTGGCAAAATCTTCGCTGAGCGC
AACTCGTGTGCTTCTGATGTGCTCCCCGTGAATGGGGAGGAGCTGAGTTC
CGAGCAACTGGAGTCGGTGACGGCGGAGGTCTTCCAAGAACTCAACAATA
TGGACCAGACGCCTGTCCAGCACGAGATGCTGGTGGAGACAACTCTGGAG
AAGCGTGGGGCGAAGGATGCTCGCATCAGCACAGGAGGTGAGAGTATTGC
GGCTGAGCAGGAGAAGGAGCGCTTCACTCTCTGTCTTGCTGTCATGGCGG
ATGTCAGCAAGGTTCCGCTACGCATCATCTTCAAAGGCATGCCGTCCAAC
CCGCCGAACAAGCCGAGGAAGGGCAAGATAACTGAGCCGCGAAAGGGGTC
CATCGCGGCAGAGGTTGCCTCTGGGAATCGTACGAAGTTTGGGCACCCCG
CGGCAGGCATGTCGTTTGGTGTGCAGGAGAATAGCTGGTGTGACGCGCGG
GAGTGCACCCTTTGGATCTCGGAGAGCTGGAAGCTTCGCCCCAACAACGG
AAGCATCATCACGCAGCGCCCGAGTATCCTGGTGTTAGGCGACTTCAAGT
GCCACCGTGACGAGGCCTTCATCGCTGACCTCCGGAAGAGGTGTAACACC
AGCGTCATCCTGATCCCGGGCGGGTTGACTCCTCTCCTCCAGCCACTGAA
CCGCATGCTCAACAAGCAGATGAAGCGGCTACTTCGGGGGGCAGGAGAAG
GAGCGCTTCACTCTCTGTCTTGCTGTCATGGCGGATGTCAGCAAGGTTCC
GCTACGCATCATCTTCAAAGGCATGCCGTCCAACCCGCCGAACAAGCCGA
GGAAGGGCAAGATAACTGAGCCGCGAAAGGGGTCCATCGCGGCAGAGGTT
GCCTCTGGGAATCGTACGAAGTTTGGGCACCCCGCGGCAGGCATGTCGTT
TGGTGTGCAGGAGAATAGCTGGTGTGACGCGCGGGAGTGCACCCTTTGGA
TCTCGGAGAGCTGGAAGCTTCGCCCCAACAACGGAAGCATCATCACGCAG
CGCCCGAGTATCCTGGTGTTAGGCGACTTCAAGTGCCACCGTGACGAGGC
CTTCATCGCTGACCTCCGGAAGAGGTGTAACACCAGCGTCATCCTGATCC
CGGGCGGGTTGACTCCTCTCCTCCAGCCACTGAACCGCATGCTCAACAAG
CAGATGAAGCGGCTACTTCGGGGG
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