mRNA_H-elongata_contig14383.3013.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig14383.3013.1
Unique Name	mRNA_H-elongata_contig14383.3013.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig14383.3013.1 vs. uniprot
Match: D7G374_ECTSI (Class-V aminotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G374_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 9.570e-25
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1

Query:   91 IRDDLVGRLETIETPFGRKPLVYADWTASGRSLKSIENFITDKVLPLYGNTHTTTSTTGAQTTAFREEA 297
            +R++L+GRL  ++TPFG KPLVYADWTASGR +KSIE+F+  +VLP YGNTHTT+S TGAQTTAFREEA
Sbjct:  117 LRNNLIGRLAPVQTPFGSKPLVYADWTASGRPVKSIEDFMNREVLPRYGNTHTTSSETGAQTTAFREEA 185

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BLAST of mRNA_H-elongata_contig14383.3013.1 vs. uniprot
Match: A0A6H5JDY7_9PHAE (Aminotran_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY7_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 9.590e-25
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1

Query:   91 IRDDLVGRLETIETPFGRKPLVYADWTASGRSLKSIENFITDKVLPLYGNTHTTTSTTGAQTTAFREEA 297
            +R++L+GRL  ++TPFG KPLVYADWTASGR +KSIE+F+  +VLP YGNTHTT+S TGAQTTAFREEA
Sbjct:  170 LRNNLIGRLAPVQTPFGSKPLVYADWTASGRPVKSIEDFMNREVLPRYGNTHTTSSETGAQTTAFREEA 238

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BLAST of mRNA_H-elongata_contig14383.3013.1 vs. uniprot
Match: A0A7S2CJ72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJ72_9STRA)

HSP 1 Score: 100 bits (250), Expect = 9.530e-23
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 1

Query:   46 GSNDHGQHLQALFAQIRDDLVGRLETIETPFGRKPLVYADWTASGRSLKSIENFITDKVLPLYGNTHTTTSTTGAQTTAFREEA 297
            GS+D      AL + +R+ L+GRLE+ +TP+G +PLVYADWTASGR+ + +E++I   VLPLYGNTHTTTS TGAQ+T FR EA
Sbjct:   34 GSSDVYASKSAL-SHLREGLIGRLESFQTPYGDRPLVYADWTASGRAHERVEDYIRSNVLPLYGNTHTTTSITGAQSTCFRHEA 116

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BLAST of mRNA_H-elongata_contig14383.3013.1 vs. uniprot
Match: A0A6A3IXT4_9STRA (Aminotran_5 domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IXT4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.710e-22
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 1

Query:   52 NDHGQHLQALFAQIRDDLVGRLETIETPFGRKPLVYADWTASGRSLKSIENFITDKVLPLYGNTHTTTSTTGAQTTAFREEA 297
            +DH    Q L   I  D++GR     TPFG K  VYAD+TASG+SL+ IE FI D+V+P YGNTHTTTS TG QTT+FREEA
Sbjct:   43 DDHANVSQVL-EDIASDMIGRNAPFNTPFGTKAQVYADYTASGKSLECIERFIHDQVMPTYGNTHTTTSVTGLQTTSFREEA 123

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BLAST of mRNA_H-elongata_contig14383.3013.1 vs. uniprot
Match: A0A3C1KPA8_9GAMM (Aminotransferase (Fragment) n=1 Tax=Haliea salexigens TaxID=287487 RepID=A0A3C1KPA8_9GAMM)

HSP 1 Score: 95.5 bits (236), Expect = 2.780e-22
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1

Query:   79 LFAQIRDDLVGRLETIETPFGRKPLVYADWTASGRSLKSIENFITDKVLPLYGNTHTTTSTTGAQTTAFREEA 297
            L A+IRD ++GR + I TPFG +PLVYAD+TASGRSL  IE+FI ++VLP Y NTHT T+ TGA+TTA RE A
Sbjct:    4 LIARIRDAVIGRQQRITTPFGERPLVYADYTASGRSLDFIEDFIREQVLPFYANTHTETAYTGARTTALRESA 76

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BLAST of mRNA_H-elongata_contig14383.3013.1 vs. uniprot
Match: UPI001868144B (aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Microbulbifer taiwanensis TaxID=986746 RepID=UPI001868144B)

HSP 1 Score: 98.2 bits (243), Expect = 8.120e-22
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 1

Query:   70 LQALFAQIRDDLVGRLETIETPFGRKPLVYADWTASGRSLKSIENFITDKVLPLYGNTHTTTSTTGAQTTAFREEA 297
            + AL   IR+ ++G ++ I+TPFGRKPLVYAD+TASGR+L  IE+ I ++VLP Y NTHT TS TGAQTTA REEA
Sbjct:    1 MSALIRSIRESVIGDMQPIDTPFGRKPLVYADYTASGRALGFIEDIIRERVLPYYANTHTETSYTGAQTTALREEA 76

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BLAST of mRNA_H-elongata_contig14383.3013.1 vs. uniprot
Match: UPI0014212D28 (aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Pseudomaricurvus alkylphenolicus TaxID=1306991 RepID=UPI0014212D28)

HSP 1 Score: 98.2 bits (243), Expect = 8.270e-22
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1

Query:   76 ALFAQIRDDLVGRLETIETPFGRKPLVYADWTASGRSLKSIENFITDKVLPLYGNTHTTTSTTGAQTTAFREEA 297
            AL   IR  ++G  + I+TPFGRKPLVYAD+TASGRSL  IE+FI ++VLP Y NTHT TS TGAQTTA RE+A
Sbjct:   10 ALIRSIRRSVIGERQPIDTPFGRKPLVYADYTASGRSLTQIEDFIRNQVLPYYANTHTETSYTGAQTTALREQA 83

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BLAST of mRNA_H-elongata_contig14383.3013.1 vs. uniprot
Match: A0A2E7C676_9GAMM (Aminotransferase n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7C676_9GAMM)

HSP 1 Score: 97.8 bits (242), Expect = 1.110e-21
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 1

Query:   70 LQALFAQIRDDLVGRLETIETPFGRKPLVYADWTASGRSLKSIENFITDKVLPLYGNTHTTTSTTGAQTTAFREEA 297
            + +L A+IRD ++GR  +I TPFG KPLVYAD+TASGRSL  IE++I D+VLP Y NTHT T+ TGA+TTA RE A
Sbjct:    1 MSSLIARIRDAVIGRQHSIATPFGEKPLVYADYTASGRSLSFIEDYIRDEVLPFYANTHTETAFTGARTTALREAA 76

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BLAST of mRNA_H-elongata_contig14383.3013.1 vs. uniprot
Match: A0A6G8DBB6_9GAMM (Aminotransferase class V-fold PLP-dependent enzyme n=3 Tax=Microbulbifer TaxID=48073 RepID=A0A6G8DBB6_9GAMM)

HSP 1 Score: 97.1 bits (240), Expect = 2.050e-21
Identity = 46/84 (54.76%), Postives = 65/84 (77.38%), Query Frame = 1

Query:   46 GSNDHGQHLQALFAQIRDDLVGRLETIETPFGRKPLVYADWTASGRSLKSIENFITDKVLPLYGNTHTTTSTTGAQTTAFREEA 297
            GS + G   ++L  +IRD+++G    ++TPFG++PL+YAD+TASGR+L+ IE+ I ++VLP Y NTHT TS TG QTTAFRE+A
Sbjct:    5 GSPEAGTKTESLLQRIRDNVIGERMPMQTPFGQRPLIYADYTASGRALRFIEDAIRNRVLPWYANTHTETSATGRQTTAFREQA 88

[Close]

BLAST of mRNA_H-elongata_contig14383.3013.1 vs. uniprot
Match: A0A836CNZ6_9STRA (Pyridoxal phosphate-dependent transferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNZ6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.280e-21
Identity = 45/71 (63.38%), Postives = 59/71 (83.10%), Query Frame = 1

Query:   85 AQIRDDLVGRLETIETPFGRKPLVYADWTASGRSLKSIENFITDKVLPLYGNTHTTTSTTGAQTTAFREEA 297
            A IR +LVGRL    +P+G+ PLVYADWTA+GRSL SIE++I ++V+P+YGNTHTTTS TG+Q+T F+ EA
Sbjct:   57 ATIRRELVGRLSPFMSPYGQMPLVYADWTATGRSLASIESYIANEVMPMYGNTHTTTSITGSQSTCFQHEA 127

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig14383.3013.1 vs. uniprot

BLAST of mRNA_H-elongata_contig14383.3013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G374_ECTSI	9.570e-25	72.46	Class-V aminotransferase n=1 Tax=Ectocarpus silicu...	[more]
A0A6H5JDY7_9PHAE	9.590e-25	72.46	Aminotran_5 domain-containing protein n=1 Tax=Ecto...	[more]
A0A7S2CJ72_9STRA	9.530e-23	59.52	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A6A3IXT4_9STRA	2.710e-22	59.76	Aminotran_5 domain-containing protein n=1 Tax=Phyt...	[more]
A0A3C1KPA8_9GAMM	2.780e-22	64.38	Aminotransferase (Fragment) n=1 Tax=Haliea salexig...	[more]
UPI001868144B	8.120e-22	63.16	aminotransferase class V-fold PLP-dependent enzyme...	[more]
UPI0014212D28	8.270e-22	66.22	aminotransferase class V-fold PLP-dependent enzyme...	[more]
A0A2E7C676_9GAMM	1.110e-21	63.16	Aminotransferase n=1 Tax=Haliea sp. TaxID=1932666 ...	[more]
A0A6G8DBB6_9GAMM	2.050e-21	54.76	Aminotransferase class V-fold PLP-dependent enzyme...	[more]
A0A836CNZ6_9STRA	2.280e-21	63.38	Pyridoxal phosphate-dependent transferase (Fragmen...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig14383	contig	H-elongata_contig14383:2715..4710 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	105.9
Seed ortholog evalue	1.1e-20
Seed eggNOG ortholog	2880.D7G374
EggNOG free text desc.	tRNA thio-modification
EggNOG OGs	COG0037@1,KOG2840@2759
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	2
Model size	298
Cds size	291
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig14383.3013.1	prot_H-elongata_contig14383.3013.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig14383 2715..4704 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929852.8107893-CDS-H-elongata_contig14383:2714..2854	1622929852.8107893-CDS-H-elongata_contig14383:2714..2854	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14383 2715..2854 -
1691679183.6677256-CDS-H-elongata_contig14383:2714..2854	1691679183.6677256-CDS-H-elongata_contig14383:2714..2854	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14383 2715..2854 -
1622929852.831732-CDS-H-elongata_contig14383:4553..4704	1622929852.831732-CDS-H-elongata_contig14383:4553..4704	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14383 4554..4704 -
1691679183.6798444-CDS-H-elongata_contig14383:4553..4704	1691679183.6798444-CDS-H-elongata_contig14383:4553..4704	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig14383 4554..4704 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929852.8510478-UTR-H-elongata_contig14383:4704..4710	1622929852.8510478-UTR-H-elongata_contig14383:4704..4710	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig14383 4705..4710 -
1691679183.6887882-UTR-H-elongata_contig14383:4704..4710	1691679183.6887882-UTR-H-elongata_contig14383:4704..4710	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig14383 4705..4710 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig14383:2715..4710-
coding sequence from alignment at H-elongata_contig14383:2715..4710-

protein sequence of mRNA_H-elongata_contig14383.3013.1

>prot_H-elongata_contig14383.3013.1 ID=prot_H-elongata_contig14383.3013.1|Name=mRNA_H-elongata_contig14383.3013.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MTRNQMMRDSIRMGSNDHGQHLQALFAQIRDDLVGRLETIETPFGRKPLV
YADWTASGRSLKSIENFITDKVLPLYGNTHTTTSTTGAQTTAFREEA

mRNA from alignment at H-elongata_contig14383:2715..4710-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig14383.3013.1 ID=mRNA_H-elongata_contig14383.3013.1|Name=mRNA_H-elongata_contig14383.3013.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1996bp|location=Sequence derived from alignment at H-elongata_contig14383:2715..4710- (Himanthalia elongata Himel1 dioecious)
GATGCCATGACGAGGAATCAGATGATGAGAGATTCGATTCGCATGGGCAG
TAATGATCATGGCCAGCACCTGCAAGCATTATTCGCCCAGATACGCGACG
ACCTCGTCGGGAGGCTTGAAACCATCGAGACACCTTTCGGGAGGAAGCCA
CTAGTATGTGAGTTAATCGTGCGCGACTCCCCTTTAACCATCTGATCTCT
CCTTCAACACGAAGAGTTGCAACACTGGCGAGGTCAAGGGTGGACCAGGT
CCTGATTATTTGCTTAAGCTGTACATTATATTCCGTAAACGAACCTCGCC
AGCAAAAAAGGTTGATCAATCGAAAGTCCAGGATGTTTTGTCAATCATTT
CTACGCGGTGCCTTGTTTGCAGAGTGTTCGGGATTCAGTTGTTGGTCTGA
TTCACAATATCTCTGTGCCCACTCTAAGCCCCCGCTTTATTTTATGTGCA
TCACGAGTTCAATACTTTTTACTCCGCCTCGCCCCCCGCCGGCAAGCTCT
GCAAACTGGCTCTTCCGCCTTTTAACCATCTCGTCTGTCAAATCTGGAGG
TCGTATAGAGCTTTTCATATCACGATTTTTCTCTTTTTTTGAGGTCACTA
TTATACACCCAAACACTATCGTCAGAGGTCGAAACAATCTTGATTAATCA
GGAGATCTTGGTATTTTCAGAAACATATATTTTTACGAATGCTTGGCCAT
TTCGGAAAATTCAGGTTGGTCAGTGCCTCGAACGAAATATCTTGCTTATG
GCAAAACGTCGATAATGTACCTTGATCGCGTATATCGGTTGACGTAATGG
CGAGTCATAGTGGTAGTGGCGCGAACCAGCCCTGCAGGAGTCGATAGCTG
CAATCGTTTTCCCTTCTAATTTGCATTTTATTAGTGAACGTTCTTGGAAA
TGCTGCAATTTACGCTCAAGAACGTTCGATGAACGGATTGGACGGAGCTA
ACTTGGCTAATAGGTACGGGATCCTAGGGGTAACAGCTTTTATCTGATTG
GTCAGGGATTTTCGAAAATGTTGCTGAAGCTTATCGAAATCGGTTACGCT
ATTAGTTGCGTGATGCTGCTCTTAAGGGAAGGATAGTCGCAGCAGCTTTC
CTTCCAGTTTGCCTTGTAGACAAGGTTTTTGAAAAAATTGCAGTTTCAAC
AAGACATGGACGCTCGATCAACGGATCGGACGGAGCTGACATAGCATATA
TTTTACGGGATGCTTTGGGCAGCACCTTTCATTCGATCGGTGGGATATTT
CTGCTAATCTAAGATGGTTTCTTGATTACTTGGGGCCCTTAGTCCGAAAC
ATTTTTTTCCCTCTGACTTTCACCAAAATATCGTTTCACTCGACGTCACG
CTTTCTTCATTGTGAGGGTACGGTAGGGCGGTATGGTGACTTGGAGGAGA
GTCTTTCTCCGTCACTTGATAATATCAATGCTAATATTGTTAGGCGCTTC
GAGGAGAGCCGAGATCTCGCGGGCTGCAGCAGAATAACGGGCCGTTGTTG
GCCTGTGCGTGGAATTTTGATGTTCCAGTAGTACATTGACATAATAAACG
ATATGCGTGACATGTCCTATTCTGAGTCATGTATGTCTATGTACATAGGC
ATACTATATACATACATGAACATGAACTGGCGATATTACACCCAAAACAC
TATGGCCGGATAAACAATTATCCCCGAAGACTCTCGTCGCTGTCGCTTCT
TTCCTGCAATCCACATGCATGCATCTTCATCTCGCACTCCTATCGCAACA
CTAGATCTTTTGGCATCTCGTCCCTACTGTACCACCTGTCGCGAGAGCCC
TAGTCTTTTTCACGATAATAATGCAATATTCCGGCTTCAATGACTTATTG
CCACAGATGCAGACTGGACTGCGAGCGGGCGCTCTCTCAAGAGCATTGAG
AATTTCATAACCGACAAGGTGTTGCCTCTGTACGGCAATACGCACACCAC
GACGTCGACCACAGGCGCCCAAACCACAGCTTTTCGAGAGGAAGCC

Coding sequence (CDS) from alignment at H-elongata_contig14383:2715..4710-

>mRNA_H-elongata_contig14383.3013.1 ID=mRNA_H-elongata_contig14383.3013.1|Name=mRNA_H-elongata_contig14383.3013.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig14383:2715..4710- (Himanthalia elongata Himel1 dioecious)
ATGACGAGGAATCAGATGATGAGAGATTCGATTCGCATGGGCAGTAATGA
TCATGGCCAGCACCTGCAAGCATTATTCGCCCAGATACGCGACGACCTCG
TCGGGAGGCTTGAAACCATCGAGACACCTTTCGGGAGGAAGCCACTAGTA
TATGACGAGGAATCAGATGATGAGAGATTCGATTCGCATGGGCAGTAATG
ATCATGGCCAGCACCTGCAAGCATTATTCGCCCAGATACGCGACGACCTC
GTCGGGAGGCTTGAAACCATCGAGACACCTTTCGGGAGGAAGCCACTAGT
ATATGCAGACTGGACTGCGAGCGGGCGCTCTCTCAAGAGCATTGAGAATT
TCATAACCGACAAGGTGTTGCCTCTGTACGGCAATACGCACACCACGACG
TCGACCACAGGCGCCCAAACCACAGCTTTTCGAGAGGAAGCCATGCAGAC
TGGACTGCGAGCGGGCGCTCTCTCAAGAGCATTGAGAATTTCATAACCGA
CAAGGTGTTGCCTCTGTACGGCAATACGCACACCACGACGTCGACCACAG
GCGCCCAAACCACAGCTTTTCGAGAGGAAGCC