mRNA_H-elongata_contig14380.3012.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14380.3012.1
Unique NamemRNA_H-elongata_contig14380.3012.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14380.3012.1 vs. uniprot
Match: D8LH78_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH78_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.510e-19
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:  127 MSGGDSSFEGLLAGIISNNNEERRRAETAYNEVLDTQPAVVVANLLRCLENGQAELLRTTCAVLLRRVVV 336
            MS GD++FE +LAG++S +N  R+ AE  YN+ L+TQPAV+   LLRCL + QAEL+RTTCAVL+RRVVV
Sbjct:    1 MSSGDANFEAVLAGLLSQDNAVRKNAEAVYNKELETQPAVIAGQLLRCLASAQAELIRTTCAVLIRRVVV 70
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BLAST of mRNA_H-elongata_contig14380.3012.1 vs. uniprot
Match: A0A2V0P880_9CHLO (Importin N-terminal domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P880_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 4.450e-5
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  142 SSFEGLLAGIISNNNEERRRAETAYNEVLDTQPAVVVANLLRCLENGQAELLRTTCAVLLRRV 330
            ++FEGL+A ++S++NE RR AE  + EV    P   V +LLRCL    +E  R   A++LR+V
Sbjct:   13 NAFEGLVATLLSSDNESRRHAEAVFEEV-KKHPDACVQHLLRCLRQSASEENRAFSAIMLRKV 74
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BLAST of mRNA_H-elongata_contig14380.3012.1 vs. uniprot
Match: A0A836B4K9_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B4K9_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 8.270e-5
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:  145 SFEGLLAGIISNNNEERRRAETAYNEVLDTQPAVVVANLLRCLENGQAELLRTTCAVLLRRVVV 336
            SF GL+   +S +N  R+ AE  Y+ +   +P     NLL+ L      L+R+TCAV LR+VVV
Sbjct:   15 SFAGLIGQTLSTDNATRKSAEDLYSSLRRQRPDACATNLLQLLRTSSEVLVRSTCAVFLRKVVV 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14380.3012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LH78_ECTSI5.510e-1961.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2V0P880_9CHLO4.450e-542.86Importin N-terminal domain-containing protein n=1 ... [more]
A0A836B4K9_9CHLO8.270e-540.63Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14380contigH-elongata_contig14380:5242..5791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog2880.D8LH78
KEGG koko:K20222
KEGG TC1.I.1
GOsGO:0000060,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size338
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14380.3012.1prot_H-elongata_contig14380.3012.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14380 5242..5665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.7221208-CDS-H-elongata_contig14380:5241..52921622929852.7221208-CDS-H-elongata_contig14380:5241..5292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14380 5242..5292 -
1691679183.6314683-CDS-H-elongata_contig14380:5241..52921691679183.6314683-CDS-H-elongata_contig14380:5241..5292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14380 5242..5292 -
1622929852.7427492-CDS-H-elongata_contig14380:5506..56651622929852.7427492-CDS-H-elongata_contig14380:5506..5665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14380 5507..5665 -
1691679183.6436605-CDS-H-elongata_contig14380:5506..56651691679183.6436605-CDS-H-elongata_contig14380:5506..5665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14380 5507..5665 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.7626474-UTR-H-elongata_contig14380:5665..57911622929852.7626474-UTR-H-elongata_contig14380:5665..5791Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14380 5666..5791 -
1691679183.6566389-UTR-H-elongata_contig14380:5665..57911691679183.6566389-UTR-H-elongata_contig14380:5665..5791Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14380 5666..5791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14380.3012.1

>prot_H-elongata_contig14380.3012.1 ID=prot_H-elongata_contig14380.3012.1|Name=mRNA_H-elongata_contig14380.3012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MSGGDSSFEGLLAGIISNNNEERRRAETAYNEVLDTQPAVVVANLLRCLE
NGQAELLRTTCAVLLRRVVV
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mRNA from alignment at H-elongata_contig14380:5242..5791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14380.3012.1 ID=mRNA_H-elongata_contig14380.3012.1|Name=mRNA_H-elongata_contig14380.3012.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=550bp|location=Sequence derived from alignment at H-elongata_contig14380:5242..5791- (Himanthalia elongata Himel1 dioecious)
CTGAGCCGCAACCAGATACCATCTGCATCCACAAGGGAAATCAATCGAAC
TTCCTGACTCGGAGAAGTAACTGACGACGGCAATCTAATCAGACCTGGAA
TTTCTATTTACCGTAGAAATATAATAATGTCAGGTGGAGACTCTAGCTTT
GAAGGTTTACTTGCTGGAATCATTTCCAACAACAACGAGGAGCGAAGGCG
CGCAGAAACGGCGTACAATGAAGTCTTGGATACACAGCCGGCAGTGGTCG
TGGCGAATCTCCTACGGTGTCTGGAAAACGGCCAGGTCTCGTGGCGATCC
TGGTCGGCCAAAGCATGTTGATTTCGAGCTTAATAAAGAATCTTGAATCC
TTCCCTGCAGCACGTGGCAGACCCCAAAATACTTTGATACACCTGGTATC
CTGCTCTTTTCTGAAAAACATTTAAACTTATTTGGATTTTCTTTGAATTT
GGCGCCAATAGGAAATGACATTCAATTCCCTCATCTCTGCTTCGCACAGG
CCGAGCTCCTCCGCACCACCTGCGCGGTGCTCCTTCGCAGAGTCGTTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig14380:5242..5791-

>mRNA_H-elongata_contig14380.3012.1 ID=mRNA_H-elongata_contig14380.3012.1|Name=mRNA_H-elongata_contig14380.3012.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig14380:5242..5791- (Himanthalia elongata Himel1 dioecious)
ATGTCAGGTGGAGACTCTAGCTTTGAAGGTTTACTTGCTGGAATCATTTC
CAACAACAACGAGGAGCGAAGGCGCGCAGAAACGGCGTACAATGAAGTCT
TGGATACACAGCCGGCAGTGGTCGTGGCGAATCTCCTACGGTGTCTGGAA
AACGGCCAGATGTCAGGTGGAGACTCTAGCTTTGAAGGTTTACTTGCTGG
AATCATTTCCAACAACAACGAGGAGCGAAGGCGCGCAGAAACGGCGTACA
ATGAAGTCTTGGATACACAGCCGGCAGTGGTCGTGGCGAATCTCCTACGG
TGTCTGGAAAACGGCCAGGCCGAGCTCCTCCGCACCACCTGCGCGGTGCT
CCTTCGCAGAGTCGTTGTGGCCGAGCTCCTCCGCACCACCTGCGCGGTGC
TCCTTCGCAGAGTCGTTGTG
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