prot_H-elongata_contig143783.3010.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig143783.3010.1
Unique Nameprot_H-elongata_contig143783.3010.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length57
Homology
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: D7FM14_ECTSI (DNA polymerase I (POL I) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM14_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.020e-20
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 0
Query:    1 MLRPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 56
            M++PR SLV+ PGY FVSADYSQ+EMRL+AHLSGD DLL VFADGGDVFR I+AA+
Sbjct:  212 MIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAAL 267          
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.850e-20
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 0
Query:    1 MLRPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 56
            M++PR SLV+ PGY FVSADYSQ+EMRL+AHLSGD DLL VFADGGDVFR I+AA+
Sbjct: 2012 MMKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAAL 2067          
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: A0A562BVI5_9BURK (DNA polymerase I n=13 Tax=Cupriavidus TaxID=106589 RepID=A0A562BVI5_9BURK)

HSP 1 Score: 66.2 bits (160), Expect = 2.730e-11
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 0
Query:    3 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 56
            R R + ++ PG+V VSADYSQIE+R++AH+SGD++LLG FA G D+ R  +A +
Sbjct:  699 RIREAFIASPGHVIVSADYSQIELRIMAHISGDENLLGAFARGEDIHRATAAEI 752          
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: T1APU0_9ZZZZ (DNA polymerase I (Fragment) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T1APU0_9ZZZZ)

HSP 1 Score: 61.2 bits (147), Expect = 5.040e-11
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    3 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 56
            R R + ++ PG V ++ADYSQIE+R++AHLSGD+ LLG FA+  DV R  +A V
Sbjct:    2 RIRQAFIAPPGQVLLAADYSQIELRIMAHLSGDEGLLGAFAEERDVHRATAAEV 55          
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: B1Y3T7_LEPCP (DNA polymerase I n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) TaxID=395495 RepID=B1Y3T7_LEPCP)

HSP 1 Score: 65.1 bits (157), Expect = 6.970e-11
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    3 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 56
            R R + V+ PG+  VSADYSQIE+RL+AH+SGD +LL  FADG DV R  +A V
Sbjct:  694 RVREAFVAAPGHKLVSADYSQIELRLMAHISGDANLLKAFADGMDVHRATAAEV 747          
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: A0A0S8DVH4_9GAMM (DNA polymerase I n=1 Tax=Gammaproteobacteria bacterium SG8_47 TaxID=1703406 RepID=A0A0S8DVH4_9GAMM)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0
Query:    3 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 56
            R R + ++ PGY  V+ADYSQIE+R++AHLSGD+ LL  FA G DV R  +A V
Sbjct:  656 RIRQAFIAAPGYKLVAADYSQIELRIMAHLSGDEGLLAAFASGTDVHRATAAEV 709          
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: A0A8J7FKX9_9NEIS (DNA polymerase I n=3 Tax=Chitinilyticum TaxID=551208 RepID=A0A8J7FKX9_9NEIS)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    3 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 56
            R R + ++ PG+V VSADYSQIE+R++AHLSGD +LL  F+DG DV R  +A V
Sbjct:  679 RIREAFIAPPGHVIVSADYSQIELRIMAHLSGDTNLLRAFSDGMDVHRATAAEV 732          
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: A0A4R7B7J2_9NEIS (DNA polymerase I n=1 Tax=Paludibacterium purpuratum TaxID=1144873 RepID=A0A4R7B7J2_9NEIS)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    3 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 56
            R R + ++ PG+V VSADYSQIE+R++AH+SGD+ +L  FADG D+ R  +A V
Sbjct:  684 RVREAFIAPPGHVIVSADYSQIELRIMAHVSGDEGMLKAFADGEDIHRATAAQV 737          
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: UPI001C043B5B (DNA polymerase I n=1 Tax=Paludibacterium sp. B53371 TaxID=2806263 RepID=UPI001C043B5B)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    3 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 56
            R R + ++ PG+V VSADYSQIE+R++AH+SGD+ +L  FADG D+ R  +A V
Sbjct:  684 RVREAFIAPPGHVIVSADYSQIELRIMAHVSGDEGMLKAFADGEDIHRATAAQV 737          
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: A0A1C6M8D6_9NEIS (DNA polymerase I n=2 Tax=Vogesella TaxID=57739 RepID=A0A1C6M8D6_9NEIS)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    3 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 56
            R R + V+ PG+V VSADYSQIE+R++AHLSGD+ +L  FA G D+ +  +A V
Sbjct:  698 RVREAFVAAPGHVIVSADYSQIELRIMAHLSGDEGMLAAFASGEDIHKATAAEV 751          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM14_ECTSI5.020e-2076.79DNA polymerase I (POL I) n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L306_9PHAE5.850e-2076.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A562BVI5_9BURK2.730e-1153.70DNA polymerase I n=13 Tax=Cupriavidus TaxID=106589... [more]
T1APU0_9ZZZZ5.040e-1153.70DNA polymerase I (Fragment) n=1 Tax=mine drainage ... [more]
B1Y3T7_LEPCP6.970e-1159.26DNA polymerase I n=1 Tax=Leptothrix cholodnii (str... [more]
A0A0S8DVH4_9GAMM1.300e-1055.56DNA polymerase I n=1 Tax=Gammaproteobacteria bacte... [more]
A0A8J7FKX9_9NEIS1.300e-1057.41DNA polymerase I n=3 Tax=Chitinilyticum TaxID=5512... [more]
A0A4R7B7J2_9NEIS1.300e-1053.70DNA polymerase I n=1 Tax=Paludibacterium purpuratu... [more]
UPI001C043B5B1.300e-1053.70DNA polymerase I n=1 Tax=Paludibacterium sp. B5337... [more]
A0A1C6M8D6_9NEIS1.300e-1053.70DNA polymerase I n=2 Tax=Vogesella TaxID=57739 Rep... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001098DNA-directed DNA polymerase, family A, palm domainPFAMPF00476DNA_pol_Acoord: 7..55
e-value: 1.9E-13
score: 50.2
NoneNo IPR availableGENE3D3.30.70.370coord: 2..47
e-value: 4.1E-7
score: 31.7
NoneNo IPR availablePANTHERPTHR10133:SF27DNA POLYMERASE THETAcoord: 5..55
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 4..55
IPR002298DNA polymerase APANTHERPTHR10133DNA POLYMERASE Icoord: 5..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143783contigH-elongata_contig143783:301..1056 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143783.3010.1mRNA_H-elongata_contig143783.3010.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig143783 301..1056 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig143783.3010.1 ID=prot_H-elongata_contig143783.3010.1|Name=mRNA_H-elongata_contig143783.3010.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MLRPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFR
GISAAV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001098DNA-dir_DNA_pol_A_palm_dom
IPR002298DNA_polymerase_A