mRNA_H-elongata_contig143783.3010.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143783.3010.1
Unique NamemRNA_H-elongata_contig143783.3010.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: D7FM14_ECTSI (DNA polymerase I (POL I) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM14_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.020e-20
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 MLRPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 168
            M++PR SLV+ PGY FVSADYSQ+EMRL+AHLSGD DLL VFADGGDVFR I+AA+
Sbjct:  212 MIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAAL 267
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BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.850e-20
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 MLRPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 168
            M++PR SLV+ PGY FVSADYSQ+EMRL+AHLSGD DLL VFADGGDVFR I+AA+
Sbjct: 2012 MMKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAAL 2067
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BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: A0A562BVI5_9BURK (DNA polymerase I n=13 Tax=Cupriavidus TaxID=106589 RepID=A0A562BVI5_9BURK)

HSP 1 Score: 66.2 bits (160), Expect = 2.730e-11
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    7 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 168
            R R + ++ PG+V VSADYSQIE+R++AH+SGD++LLG FA G D+ R  +A +
Sbjct:  699 RIREAFIASPGHVIVSADYSQIELRIMAHISGDENLLGAFARGEDIHRATAAEI 752
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BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: T1APU0_9ZZZZ (DNA polymerase I (Fragment) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T1APU0_9ZZZZ)

HSP 1 Score: 61.2 bits (147), Expect = 5.040e-11
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    7 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 168
            R R + ++ PG V ++ADYSQIE+R++AHLSGD+ LLG FA+  DV R  +A V
Sbjct:    2 RIRQAFIAPPGQVLLAADYSQIELRIMAHLSGDEGLLGAFAEERDVHRATAAEV 55
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BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: B1Y3T7_LEPCP (DNA polymerase I n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) TaxID=395495 RepID=B1Y3T7_LEPCP)

HSP 1 Score: 65.1 bits (157), Expect = 6.970e-11
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    7 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 168
            R R + V+ PG+  VSADYSQIE+RL+AH+SGD +LL  FADG DV R  +A V
Sbjct:  694 RVREAFVAAPGHKLVSADYSQIELRLMAHISGDANLLKAFADGMDVHRATAAEV 747
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BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: A0A0S8DVH4_9GAMM (DNA polymerase I n=1 Tax=Gammaproteobacteria bacterium SG8_47 TaxID=1703406 RepID=A0A0S8DVH4_9GAMM)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    7 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 168
            R R + ++ PGY  V+ADYSQIE+R++AHLSGD+ LL  FA G DV R  +A V
Sbjct:  656 RIRQAFIAAPGYKLVAADYSQIELRIMAHLSGDEGLLAAFASGTDVHRATAAEV 709
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BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: A0A8J7FKX9_9NEIS (DNA polymerase I n=3 Tax=Chitinilyticum TaxID=551208 RepID=A0A8J7FKX9_9NEIS)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    7 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 168
            R R + ++ PG+V VSADYSQIE+R++AHLSGD +LL  F+DG DV R  +A V
Sbjct:  679 RIREAFIAPPGHVIVSADYSQIELRIMAHLSGDTNLLRAFSDGMDVHRATAAEV 732
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BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: A0A4R7B7J2_9NEIS (DNA polymerase I n=1 Tax=Paludibacterium purpuratum TaxID=1144873 RepID=A0A4R7B7J2_9NEIS)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    7 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 168
            R R + ++ PG+V VSADYSQIE+R++AH+SGD+ +L  FADG D+ R  +A V
Sbjct:  684 RVREAFIAPPGHVIVSADYSQIELRIMAHVSGDEGMLKAFADGEDIHRATAAQV 737
[Close]
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: UPI001C043B5B (DNA polymerase I n=1 Tax=Paludibacterium sp. B53371 TaxID=2806263 RepID=UPI001C043B5B)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    7 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 168
            R R + ++ PG+V VSADYSQIE+R++AH+SGD+ +L  FADG D+ R  +A V
Sbjct:  684 RVREAFIAPPGHVIVSADYSQIELRIMAHVSGDEGMLKAFADGEDIHRATAAQV 737
[Close]
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Match: A0A1C6M8D6_9NEIS (DNA polymerase I n=2 Tax=Vogesella TaxID=57739 RepID=A0A1C6M8D6_9NEIS)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    7 RPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFRGISAAV 168
            R R + V+ PG+V VSADYSQIE+R++AHLSGD+ +L  FA G D+ +  +A V
Sbjct:  698 RVREAFVAAPGHVIVSADYSQIELRIMAHLSGDEGMLAAFASGEDIHKATAAEV 751
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143783.3010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM14_ECTSI5.020e-2076.79DNA polymerase I (POL I) n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L306_9PHAE5.850e-2076.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A562BVI5_9BURK2.730e-1153.70DNA polymerase I n=13 Tax=Cupriavidus TaxID=106589... [more]
T1APU0_9ZZZZ5.040e-1153.70DNA polymerase I (Fragment) n=1 Tax=mine drainage ... [more]
B1Y3T7_LEPCP6.970e-1159.26DNA polymerase I n=1 Tax=Leptothrix cholodnii (str... [more]
A0A0S8DVH4_9GAMM1.300e-1055.56DNA polymerase I n=1 Tax=Gammaproteobacteria bacte... [more]
A0A8J7FKX9_9NEIS1.300e-1057.41DNA polymerase I n=3 Tax=Chitinilyticum TaxID=5512... [more]
A0A4R7B7J2_9NEIS1.300e-1053.70DNA polymerase I n=1 Tax=Paludibacterium purpuratu... [more]
UPI001C043B5B1.300e-1053.70DNA polymerase I n=1 Tax=Paludibacterium sp. B5337... [more]
A0A1C6M8D6_9NEIS1.300e-1053.70DNA polymerase I n=2 Tax=Vogesella TaxID=57739 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143783contigH-elongata_contig143783:301..1056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue9.4e-17
Seed eggNOG ortholog2880.D7FM14
Preferred namePOLQ
KEGG koko:K02349
GOsGO:0000018,GO:0000724,GO:0000725,GO:0000726,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003824,GO:0003887,GO:0004386,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006282,GO:0006284,GO:0006289,GO:0006302,GO:0006303,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008094,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009653,GO:0009791,GO:0009888,GO:0009892,GO:0009933,GO:0009987,GO:0010468,GO:0010564,GO:0010569,GO:0010605,GO:0016043,GO:0016445,GO:0016446,GO:0016462,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016829,GO:0016835,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0036297,GO:0042623,GO:0042802,GO:0043142,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045738,GO:0045910,GO:0045934,GO:0046483,GO:0048507,GO:0048519,GO:0048523,GO:0048532,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051239,GO:0051259,GO:0051260,GO:0051301,GO:0051575,GO:0051716,GO:0051726,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0097159,GO:0097681,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1902749,GO:1990067,GO:2000011,GO:2000026,GO:2000042,GO:2000779,GO:2000780,GO:2001020,GO:2001021
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size171
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.436902-CDS-H-elongata_contig143783:300..4021622929852.436902-CDS-H-elongata_contig143783:300..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143783 301..402 -
1691679183.5075173-CDS-H-elongata_contig143783:300..4021691679183.5075173-CDS-H-elongata_contig143783:300..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143783 301..402 -
1622929852.45457-CDS-H-elongata_contig143783:987..10561622929852.45457-CDS-H-elongata_contig143783:987..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143783 988..1056 -
1691679183.5181253-CDS-H-elongata_contig143783:987..10561691679183.5181253-CDS-H-elongata_contig143783:987..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143783 988..1056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143783.3010.1prot_H-elongata_contig143783.3010.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143783 301..1056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143783.3010.1

>prot_H-elongata_contig143783.3010.1 ID=prot_H-elongata_contig143783.3010.1|Name=mRNA_H-elongata_contig143783.3010.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MLRPRGSLVSCPGYVFVSADYSQIEMRLIAHLSGDQDLLGVFADGGDVFR
GISAAV*
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mRNA from alignment at H-elongata_contig143783:301..1056-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143783.3010.1 ID=mRNA_H-elongata_contig143783.3010.1|Name=mRNA_H-elongata_contig143783.3010.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=756bp|location=Sequence derived from alignment at H-elongata_contig143783:301..1056- (Himanthalia elongata Himel1 dioecious)
ATGCTGAGGCCCCGGGGTTCCCTTGTGTCGTGCCCGGGTTATGTCTTTGT
GTCTGCCGACTATTCGCAGGTGATTTCCTACAGAGACTTGTTTATCCACG
TTGGCAATATTTCGTATGGACGTATAAGTGTAAGTGTTACTACTGTTTCT
GATATTAAAAAATAGGTGTGCAAATATTTACATGTATATTACGTATTTAT
GTGGCTATGTCTAGGAATGTGTGAGATATATAAAAATAGAGAGAGGGCAT
ATGCACCCGTTGATGTATGGGGCTGTTCCAGTCTTGTATAGAGGCGTGTA
TAAATATGAATGGTTGTGTACGTACATGTGTGTCTGACGTGTGTGTGTGC
GTGGAGCCGTTTACTTTCGGTCTCGTACTTGCCTCAAGCTTCCGTATCCG
AGTGCGCCCTCGTCGGCTGATCATGTCGCACAGCGCGCGCGCCCCCCCCC
CGAGAGTCGTATTTCTGCACAAGAAGCGAACGTGCGGTTACTGTACGGAA
TTGTTTTATACGCTTCGAGCTTGAGCACGGTCGCGGAAGCTGGGGGGGGG
GGGTTGTCTGCCACACGTTTCGATATAGTTCCAGATGAGATTACGATCGA
TCCGTGCCGATCTGTGCTAGCACCTCGACGGGATGTGCGTCACCCGCGCA
ACAGATAGAGATGCGGCTAATAGCGCACCTGTCAGGGGATCAAGACCTCC
TTGGGGTGTTCGCCGACGGCGGGGACGTGTTCCGCGGGATATCGGCCGCC
GTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig143783:301..1056-

>mRNA_H-elongata_contig143783.3010.1 ID=mRNA_H-elongata_contig143783.3010.1|Name=mRNA_H-elongata_contig143783.3010.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig143783:301..1056- (Himanthalia elongata Himel1 dioecious)
ATGCTGAGGCCCCGGGGTTCCCTTGTGTCGTGCCCGGGTTATGTCTTTGT
GTCTGCCGACTATTCGCAGATGCTGAGGCCCCGGGGTTCCCTTGTGTCGT
GCCCGGGTTATGTCTTTGTGTCTGCCGACTATTCGCAGATAGAGATGCGG
CTAATAGCGCACCTGTCAGGGGATCAAGACCTCCTTGGGGTGTTCGCCGA
CGGCGGGGACGTGTTCCGCGGGATATCGGCCGCCGTGTAAATAGAGATGC
GGCTAATAGCGCACCTGTCAGGGGATCAAGACCTCCTTGGGGTGTTCGCC
GACGGCGGGGACGTGTTCCGCGGGATATCGGCCGCCGTGTAA
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