mRNA_H-elongata_contig143701.3009.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143701.3009.1
Unique NamemRNA_H-elongata_contig143701.3009.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.260e-23
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:   10 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 417
            + ++R+D GG++ G  F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  156 VEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFSKPAYCRWQRPS-KLLPKGESCFYVG 297
[Close]
BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.470e-22
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:   10 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 417
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  788 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCFYVG 929
[Close]
BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.480e-22
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:   10 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 417
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  495 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCFYVG 636
[Close]
BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.680e-22
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:   10 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 417
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  376 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 517
[Close]
BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.960e-22
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:   10 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 417
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:   42 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 183
[Close]
BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.000e-22
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:   10 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 417
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  309 VEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 450
[Close]
BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.370e-22
Identity = 57/144 (39.58%), Postives = 81/144 (56.25%), Query Frame = 1 
Query:   10 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGRRPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 417
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+    +A       L   +   K+DRLWAEAM +AC+  N +  S+   S SPYE+W+G        P F    Y +  +P  KL P+G +   +G
Sbjct:   42 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPYP-FLKPAYCRWQRPS-KLLPKGEACFYVG 183
[Close]
BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 9.160e-22
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:   10 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 417
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S  PYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  254 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 395
[Close]
BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.390e-21
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:   10 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 417
            I ++R+D GGE+ G +F S   +L IK+E TP ++P++NGV ER LGL+ +  +A       L   +   K+DRLWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  539 IEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVG 680
[Close]
BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.400e-21
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:   10 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 417
            I ++R+D GGE+ G +F S   +L IK+E TP ++P++NGV ER LGL+ +  +A       L   +   K+DRLWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  515 IEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVG 656
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR5_9PHAE5.260e-2340.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE1.470e-2241.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.480e-2241.38Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE1.680e-2241.38Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKK1_9PHAE1.960e-2241.38Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE2.000e-2241.38Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KWE4_9PHAE5.370e-2239.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3Y0_9PHAE9.160e-2240.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K622_9PHAE2.390e-2140.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE2.400e-2140.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143701contigH-elongata_contig143701:8..430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score95.5
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog4558.Sb07g028153.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.370368-CDS-H-elongata_contig143701:7..4301622929852.370368-CDS-H-elongata_contig143701:7..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143701 8..430 +
1691679183.4926727-CDS-H-elongata_contig143701:7..4301691679183.4926727-CDS-H-elongata_contig143701:7..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143701 8..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143701.3009.1prot_H-elongata_contig143701.3009.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143701 8..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143701.3009.1

>prot_H-elongata_contig143701.3009.1 ID=prot_H-elongata_contig143701.3009.1|Name=mRNA_H-elongata_contig143701.3009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
GLKIGVIRTDGGGEWHGQFLSFLRKLGIKRESTPPYTPQYNGVVERALGL
LHDKIVALLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELW
YGRRPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLGLV
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mRNA from alignment at H-elongata_contig143701:8..430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143701.3009.1 ID=mRNA_H-elongata_contig143701.3009.1|Name=mRNA_H-elongata_contig143701.3009.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at H-elongata_contig143701:8..430+ (Himanthalia elongata Himel1 dioecious)
GGTCTCAAAATCGGTGTCATCCGCACGGACGGTGGGGGAGAATGGCACGG
CCAGTTCCTGTCTTTCCTGCGTAAGCTCGGAATCAAGCGCGAGTCCACAC
CCCCATATACCCCCCAATACAATGGCGTCGTGGAGCGCGCTCTTGGGCTA
CTGCATGACAAGATCGTGGCCCTGCTGCAAGGTATAATGGAGGGTAAGAG
TGACCGTCTATGGGCGGAAGCTATGACATACGCATGCGATATGTGGAACC
GATCCACCTCCTCCTCCCTCGACAGCAGCACCTCGCCATATGAGCTTTGG
TACGGCCGACGGCCGACATTCGACGACATCCCCCCATTCGGGACCGTGGG
ATATCTACAACGGTCGAAGCCGGAACACAAACTAGCCCCCCGCGGGGCGA
GCTACATCATGCTCGGGCTGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig143701:8..430+

>mRNA_H-elongata_contig143701.3009.1 ID=mRNA_H-elongata_contig143701.3009.1|Name=mRNA_H-elongata_contig143701.3009.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig143701:8..430+ (Himanthalia elongata Himel1 dioecious)
GGTCTCAAAATCGGTGTCATCCGCACGGACGGTGGGGGAGAATGGCACGG
CCAGTTCCTGTCTTTCCTGCGTAAGCTCGGAATCAAGCGCGAGTCCACAC
CCCCATATACCCCCCAATACAATGGCGTCGTGGAGCGCGCTCTTGGGCTA
CTGCATGACAAGATCGTGGCCCTGCTGCAAGGTATAATGGAGGGTAAGAG
TGACCGTCTATGGGCGGAAGCTATGACATACGCATGCGATATGTGGAACC
GATCCACCTCCTCCTCCCTCGACAGCAGCACCTCGCCATATGAGCTTTGG
TACGGCCGACGGCCGACATTCGACGACATCCCCCCATTCGGGACCGTGGG
ATATCTACAACGGTCGAAGCCGGAACACAAACTAGCCCCCCGCGGGGCGA
GCTACATCATGCTCGGGCTGGTCGGTCTCAAAATCGGTGTCATCCGCACG
GACGGTGGGGGAGAATGGCACGGCCAGTTCCTGTCTTTCCTGCGTAAGCT
CGGAATCAAGCGCGAGTCCACACCCCCATATACCCCCCAATACAATGGCG
TCGTGGAGCGCGCTCTTGGGCTACTGCATGACAAGATCGTGGCCCTGCTG
CAAGGTATAATGGAGGGTAAGAGTGACCGTCTATGGGCGGAAGCTATGAC
ATACGCATGCGATATGTGGAACCGATCCACCTCCTCCTCCCTCGACAGCA
GCACCTCGCCATATGAGCTTTGGTACGGCCGACGGCCGACATTCGACGAC
ATCCCCCCATTCGGGACCGTGGGATATCTACAACGGTCGAAGCCGGAACA
CAAACTAGCCCCCCGCGGGGCGAGCTACATCATGCTCGGGCTGGTC
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