mRNA_H-elongata_contig143677.3007.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig143677.3007.1 vs. uniprot
Match: D7G7Q3_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q3_ECTSI) HSP 1 Score: 198 bits (504), Expect = 1.800e-58 Identity = 105/155 (67.74%), Postives = 116/155 (74.84%), Query Frame = 1
Query: 1 MAGGFEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAFCLPVLQIIHEELRRR----SVQRPKLKGRGDAGSDSFGTGYVCQISVVDKDDDISVSPDGLSCQSRSPKWAGARGCTGVGGGIYCYEVRVDKSIYLR 453
MAGGFEALGLAPEL+RAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAF LP+LQI+ E+LR R + RP K G GS S VC+IS DKD + VS DGLSCQ KWAGARG GV GG++C+EV+VD R
Sbjct: 1 MAGGFEALGLAPELVRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAFSLPLLQIVQEDLRSRLAGGAASRPTGKQSGGKGSSS-----VCRISRTDKDGQMVVSADGLSCQCEESKWAGARGEVGVLGGVHCFEVKVDFGNLCR 150
BLAST of mRNA_H-elongata_contig143677.3007.1 vs. uniprot
Match: A0A6H5J9J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J1_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.970e-56 Identity = 105/155 (67.74%), Postives = 115/155 (74.19%), Query Frame = 1
Query: 1 MAGGFEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAFCLPVLQIIHEELRRR----SVQRPKLKGRGDAGSDSFGTGYVCQISVVDKDDDISVSPDGLSCQSRSPKWAGARGCTGVGGGIYCYEVRVDKSIYLR 453
MAGGFEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAF LP+LQI+ E+LR R + RP K SD G VC+IS DKD + VS DGLSCQ KWAGARG GV GG++C+EV+VD R
Sbjct: 1 MAGGFEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAFSLPLLQIVQEDLRSRLAGGAASRPTRKQ-----SDGKGNSSVCRISRTDKDGQMVVSADGLSCQCLQSKWAGARGEVGVLGGVHCFEVKVDFGNLFR 150
BLAST of mRNA_H-elongata_contig143677.3007.1 vs. uniprot
Match: A0A2P6U292_CHLSO (DEAD box protein 1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U292_CHLSO) HSP 1 Score: 144 bits (364), Expect = 3.330e-37 Identity = 77/149 (51.68%), Postives = 97/149 (65.10%), Query Frame = 1
Query: 13 FEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAFCLPVLQIIHEELRRRSVQRPKLK-GRGDAGSDSFGTGYVCQISVVDKDDDISVSPDGLSCQSRSPK-WAGARGCTGVGGGIYCYEVRVDKSIYLR 453
FE +G+APELIRAV E+LG+ LPT +Q E +PLILGGGD+M AAETGSGKT AF LPVLQI+HE +R R R G G+ G+D+ C ++ D+D +++SPDGL CQ+RS + W G RG G GG YE V R
Sbjct: 194 FEEVGVAPELIRAV-EELGWTLPTPIQAECVPLILGGGDIMAAAETGSGKTGAFALPVLQIVHEAIRTRQRSRQNAPAGGGNGGADAPP---ACVLNAEDRDSVVAISPDGLRCQARSEQAWGGVRGTVGAFGGRVYYEATVSDEGLCR 338
BLAST of mRNA_H-elongata_contig143677.3007.1 vs. uniprot
Match: F0YHR0_AURAN (DEAD box protein 1 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHR0_AURAN) HSP 1 Score: 141 bits (356), Expect = 2.480e-36 Identity = 77/148 (52.03%), Postives = 97/148 (65.54%), Query Frame = 1
Query: 13 FEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAFCLPVLQIIHEELRRRSVQRPKLKGRGDAGSDSFGTGYVCQISVVDKDDDISVSPDGLSCQSRSPKWAGARG-CTGVGGGIYCYEVRVDKSIYLR 453
FEA+GL PEL V E++GYLLPT VQDEAIPLILGGGDVMVAA TGSGKTAAF LP+L+++HE+LR + G A + +S D+D +++S DG +CQSRS +WAGAR C G G+ YEV V+ +R
Sbjct: 1 FEAMGLMPELQMGV-EEIGYLLPTEVQDEAIPLILGGGDVMVAAPTGSGKTAAFALPILELVHEKLREGE------RTGGPARAAPAAAAGPPALSREDRDQTMAISDDGATCQSRSERWAGARANCGARGNGVVYYEVAVEDEGLVR 141
BLAST of mRNA_H-elongata_contig143677.3007.1 vs. uniprot
Match: UPI000A2A722A (ATP-dependent RNA helicase DDX1 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A722A) HSP 1 Score: 141 bits (356), Expect = 3.190e-36 Identity = 77/153 (50.33%), Postives = 97/153 (63.40%), Query Frame = 1
Query: 1 MAGGFEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAFCLPVLQIIHEELRRRSVQR-PKLKGRGDAGSDSFGTGYVCQISVVDKDDDISVSPDGLSCQSRSP-KWAGARGCTGVGGGIYCYEVRVDKSIYLR 453
MAG F GL PE+ +AV E + +LLPT+VQ EAIPLILGGGDV++AAETGSGKT AFCLP++QI+HE +R + PK +GD GS F +++ D+D+ ++S DGL CQSR KW G R GV G Y YE V R
Sbjct: 1 MAGHFSEFGLLPEICKAVDE-MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVHENVRDAMAGKTPKASPQGDGGSTGF------KMNPFDRDESFAISQDGLLCQSREMYKWQGCRSTLGVKKGKYYYEATVTDEGLCR 146
BLAST of mRNA_H-elongata_contig143677.3007.1 vs. uniprot
Match: E1Z2R1_CHLVA (DEAD box protein 1 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z2R1_CHLVA) HSP 1 Score: 140 bits (354), Expect = 6.270e-36 Identity = 78/154 (50.65%), Postives = 97/154 (62.99%), Query Frame = 1
Query: 13 FEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAFCLPVLQIIHEELRRRSVQRPKLKGRGDAGSDSFGTGY------VCQISVVDKDDDISVSPDGLSCQSRSPK-WAGARGCTGVGGGIYCYEVRVDKSIYLR 453
FE +G++PELI+AV E+LG++LPT +Q EA+PLILGGGDVM AAETGSGKT AF LPVLQI+HE LR R Q+ + G G GS C ++ D+D ++SPDGL CQ+RS + W G RG G GG YE V R
Sbjct: 4 FEEVGVSPELIKAV-EELGWMLPTPIQAEAVPLILGGGDVMAAAETGSGKTGAFALPVLQIVHETLRTR--QQNRAAGTGSNGSGQXXXXXSDQQPPACVLNSEDRDPVFAISPDGLRCQARSEQAWGGCRGTVGAFGGKVYYEATVADEGLCR 154
BLAST of mRNA_H-elongata_contig143677.3007.1 vs. uniprot
Match: A0A7S3Y359_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y359_HETAK) HSP 1 Score: 130 bits (326), Expect = 2.930e-34 Identity = 76/152 (50.00%), Postives = 92/152 (60.53%), Query Frame = 1
Query: 1 MAGGFEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAFCLPVLQIIHEELRRRSVQRPKLKGRGDAGSDSFGTGYVCQISVVDKDDDISVSPDGLSCQSRSPKWAGARGCTGVG-GGIYCYEVRVDKSIYLR 453
MAGGF+ALGL PEL++AV E LG+LLP++VQDEAIPL+LGGGDVM AAETGSGKT AF LPVLQ IHE R + R + D G G + KD +S L Q R P+WAG R GV GG + +E+ + R
Sbjct: 30 MAGGFDALGLCPELVQAVDE-LGWLLPSDVQDEAIPLLLGGGDVMAAAETGSGKTGAFVLPVLQQIHEARRAAAAARDE---------DEAGPGGGWALCPGSKDAVFQLSRRNLHGQVRGPRWAGGRATKGVANGGRWYFEMTAETDGLCR 171
BLAST of mRNA_H-elongata_contig143677.3007.1 vs. uniprot
Match: A0A2P6VLQ4_9CHLO (DEAD box protein 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VLQ4_9CHLO) HSP 1 Score: 135 bits (341), Expect = 3.710e-34 Identity = 77/148 (52.03%), Postives = 90/148 (60.81%), Query Frame = 1
Query: 13 FEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAFCLPVLQIIHEELRRRSVQRPKLKGRGDAGSDSFGTGYVCQISVVDKDDDISVSPDGLSCQSRSPK-WAGARGCTGVGGGIYCYEVRVDKSIYLR 453
FE G+APELI AV E LG+ LPT +Q EA+PLILGGGDVM AAETGSGKT AF LPVLQI+HE LR R R G G A S +C ++ D+D ++S DGL CQ+RS + W G RG G G YE V R
Sbjct: 4 FEEAGVAPELISAVDE-LGWTLPTPIQAEAVPLILGGGDVMAAAETGSGKTGAFALPVLQIVHEALRTRQAARQAGGGGGTAPSAQRS---LCVLNAEDRDAVFAISGDGLRCQARSEQAWGGCRGTVGAFSGRVYYEATVSDEGLCR 147
BLAST of mRNA_H-elongata_contig143677.3007.1 vs. uniprot
Match: A8IRS1_CHLRE (DEAD box protein 1 n=4 Tax=Chlamydomonas TaxID=3052 RepID=A8IRS1_CHLRE) HSP 1 Score: 134 bits (336), Expect = 1.810e-33 Identity = 80/157 (50.96%), Postives = 96/157 (61.15%), Query Frame = 1
Query: 13 FEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAFCLPVLQIIHEELRRRSVQRPKLKGRGDAGSDSFG-----TGYVCQISVVDKDDDISVSPDGLSCQSRSPK-WAGARGCTGV----GGGIYCYEVRVDKSIYLR 453
FE LG+ PEL +AV EDLG++LP+ VQ EAIPLILGGGDVM AAETGSGKT AF +P+LQI+HE LR+R+ G C +S D++ ++VSPDGLS QSRS K W G RG GV GG +Y YEV V R
Sbjct: 4 FEELGVMPELAKAV-EDLGWMLPSPVQAEAIPLILGGGDVMAAAETGSGKTGAFAIPMLQIVHETLRQRARSGSAASTSGXXXXXXXXXXXSPAAVPCVLSSEDRELHVAVSPDGLSAQSRSEKAWGGVRGSVGVFASCGGKVY-YEVTVTDEGLCR 158
BLAST of mRNA_H-elongata_contig143677.3007.1 vs. uniprot
Match: UPI00064514F9 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064514F9) HSP 1 Score: 128 bits (321), Expect = 2.090e-33 Identity = 72/151 (47.68%), Postives = 93/151 (61.59%), Query Frame = 1
Query: 13 FEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETGSGKTAAFCLPVLQIIHEELRRRSVQRPKLKGRGDAGSDSFGTG----YVCQISVVDKDDDISVSPDGLSCQSRSPKWAGARGCTGVGGGIYCYEVRVDKSIYLR 453
FE LG+ PE+I+AV E+L ++LPT +Q EAIPLILGGGDV+ AAETGSGKT AF LP+LQI +E + + G +D+ +G SV D+D+D+S+ DGL CQSR+P WAG R G+ G Y YE V R
Sbjct: 4 FEDLGVMPEIIQAV-EELDWILPTPIQQEAIPLILGGGDVLAAAETGSGKTGAFALPILQITYEFINNVATVPSDAAAIGATETDTMDSGDSDKNTITWSVNDRDNDMSI--DGLVCQSRAPDWAGCRTNLGITSGKYYYEATVRDEGLCR 151 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143677.3007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig143677.3007.1 >prot_H-elongata_contig143677.3007.1 ID=prot_H-elongata_contig143677.3007.1|Name=mRNA_H-elongata_contig143677.3007.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp MAGGFEALGLAPELIRAVTEDLGYLLPTNVQDEAIPLILGGGDVMVAAETback to top mRNA from alignment at H-elongata_contig143677:232..687- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig143677.3007.1 ID=mRNA_H-elongata_contig143677.3007.1|Name=mRNA_H-elongata_contig143677.3007.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at H-elongata_contig143677:232..687- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig143677:232..687- >mRNA_H-elongata_contig143677.3007.1 ID=mRNA_H-elongata_contig143677.3007.1|Name=mRNA_H-elongata_contig143677.3007.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig143677:232..687- (Himanthalia elongata Himel1 dioecious)back to top |