mRNA_H-elongata_contig143629.3004.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143629.3004.1
Unique NamemRNA_H-elongata_contig143629.3004.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.770e-14
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIAIEYISARFLKARISIKYNF-VTFVVAYAPTE 267
            DV+GLQET+++G   I    Y + +SG   G K KRG+ GVG+AIKE +    G++   +E IS R +K R+ I     VTFVV YAPTE
Sbjct:  190 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 279          
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: UPI000B99A10F (craniofacial development protein 2-like n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI000B99A10F)

HSP 1 Score: 63.2 bits (152), Expect = 3.210e-10
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 1
Query:    1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIAIEYISARFLKARISIKYNFVTFVVAYAPTEEATGEQKDS 294
            DVV LQE +  G+  I   +Y V +SGN    + + G+HG  L I  ++ +      +A   +S R  K RI  ++  +T + AYAPTEEAT E KD+
Sbjct:   20 DVVALQEVRWKGSGRIDKKDYSVLYSGN----EERAGRHGTALIINAKVRHRL----LAFWPVSERMCKIRIKGRFRNLTIISAYAPTEEATDEDKDT 109          
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: UPI00193E6A31 (craniofacial development protein 2-like n=2 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193E6A31)

HSP 1 Score: 59.7 bits (143), Expect = 2.800e-8
Identity = 35/98 (35.71%), Postives = 52/98 (53.06%), Query Frame = 1
Query:    1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIAIEYISARFLKARISIKYNFVTFVVAYAPTEEATGEQKDS 294
            DVV LQE +  G+  I   +Y V +SGN    + + G+HG    I  ++ +      +A   +S    K RI  ++  +T + AYAPTEEAT E KD+
Sbjct:   20 DVVALQEVRWKGSGRIDKKDYSVLYSGN----EERAGRHGTAFIINAKVRHRI----LAFWPVSEHMCKIRIKGRFRNLTIISAYAPTEEATDEDKDT 109          
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: A0A2P8XIN1_BLAGE (Craniofacial development protein 2 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8XIN1_BLAGE)

HSP 1 Score: 55.8 bits (133), Expect = 1.340e-7
Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = 1
Query:    1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIAIEYISARFLKARISIKYNFVTFVVAYAPTEEATGEQKD 291
            D+V +QET+      I   ++  Y+ G     K + GQ G G  IK+++V    K  IA   I+ R  K RI  K+N +T +  YAPTEE     KD
Sbjct:   30 DIVAVQETRWTDVGMIKKKDFTFYYGGP----KTRTGQAGTGFLIKQKMV----KHVIAFNTINERISKLRIRGKFNNITLINVYAPTEECQDNIKD 118          
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: A0A2P8YU54_BLAGE (Craniofacial development protein 2 (Fragment) n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8YU54_BLAGE)

HSP 1 Score: 54.7 bits (130), Expect = 7.290e-7
Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = 1
Query:    1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIA-IEYISARFLKARISIKYNFVTFVVAYAPTEEATGEQKD 291
            +++ +QE +  G   I+  +Y +++SGN    K K GQ G G      +VN+  KD I+    I+ R  K R   KYN VT + +YAPTEE   + K+
Sbjct:   13 EILTIQEIRWSGEGTISKDKYTLFYSGN----KDKAGQAGTGF-----LVNKKLKDHISGFIPINERLCKLRYRGKYNNVTLINSYAPTEEKNDDDKE 101          
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: A0A2P8ZA67_BLAGE (Reverse transcriptase domain-containing protein n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8ZA67_BLAGE)

HSP 1 Score: 55.5 bits (132), Expect = 9.070e-7
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:    1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIAIEYI--SARFLKARISIKYNFVTFVVAYAPTEEATGEQKDS 294
            ++V LQE + +G   I   +Y +Y+SG       K G+ G G  +K++I N        I+++  + R  K RI  KYN +T +  YAPTE+ T E K++
Sbjct:   22 EIVALQEIRWNGDGIINKKDYTLYYSGPSK----KTGKAGTGFFVKKKIHNSI------IDFVPHNDRLCKLRIQSKYNKITLINTYAPTEDKTIEIKET 111          
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Match: A0A2P8YNN3_BLAGE (Reverse transcriptase domain-containing protein n=2 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8YNN3_BLAGE)

HSP 1 Score: 53.1 bits (126), Expect = 5.870e-6
Identity = 33/90 (36.67%), Postives = 45/90 (50.00%), Query Frame = 1
Query:    1 DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIVNEAGKDDIAIEYISARFLKARISIKYNFVTFVVAYAPTEE 270
            DVV +QET+      I   ++  Y+ G     K + GQ G G  I+ +++N      I  E  + R  K RI  KYN VT +  YAPTEE
Sbjct:   30 DVVAVQETRWSNTEIIKKKDFTFYYGGP----KTRTGQAGTGFFIRTKVMNYV----IGFETYNERISKLRIKGKYNNVTLINVYAPTEE 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143629.3004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JVN7_9PHAE1.770e-1446.67Reverse transcriptase domain-containing protein n=... [more]
UPI000B99A10F3.210e-1037.76craniofacial development protein 2-like n=1 Tax=Ni... [more]
UPI00193E6A312.800e-835.71craniofacial development protein 2-like n=2 Tax=Ni... [more]
A0A2P8XIN1_BLAGE1.340e-736.08Craniofacial development protein 2 n=1 Tax=Blattel... [more]
A0A2P8YU54_BLAGE7.290e-735.71Craniofacial development protein 2 (Fragment) n=1 ... [more]
A0A2P8ZA67_BLAGE9.070e-734.00Reverse transcriptase domain-containing protein n=... [more]
A0A2P8YNN3_BLAGE5.870e-636.67Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143629contigH-elongata_contig143629:134..430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.0244076-CDS-H-elongata_contig143629:133..4301622929852.0244076-CDS-H-elongata_contig143629:133..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143629 134..430 +
1691679183.4051228-CDS-H-elongata_contig143629:133..4301691679183.4051228-CDS-H-elongata_contig143629:133..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143629 134..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143629.3004.1prot_H-elongata_contig143629.3004.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143629 134..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143629.3004.1

>prot_H-elongata_contig143629.3004.1 ID=prot_H-elongata_contig143629.3004.1|Name=mRNA_H-elongata_contig143629.3004.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
DVVGLQETKQDGASEITASEYRVYFSGNCNGVKGKRGQHGVGLAIKEEIV
NEAGKDDIAIEYISARFLKARISIKYNFVTFVVAYAPTEEATGEQKDS*
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mRNA from alignment at H-elongata_contig143629:134..430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143629.3004.1 ID=mRNA_H-elongata_contig143629.3004.1|Name=mRNA_H-elongata_contig143629.3004.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig143629:134..430+ (Himanthalia elongata Himel1 dioecious)
GATGTTGTTGGACTGCAGGAGACAAAACAGGACGGAGCATCTGAAATAAC TGCATCTGAATACCGGGTCTACTTCAGTGGTAACTGCAACGGGGTTAAAG GGAAAAGAGGGCAACATGGGGTGGGACTAGCGATAAAGGAGGAGATCGTT AACGAGGCCGGCAAGGACGACATCGCAATCGAGTACATCAGCGCACGTTT CCTGAAGGCTCGAATATCGATTAAATATAATTTTGTTACGTTTGTGGTAG CATACGCTCCGACCGAGGAAGCGACGGGAGAGCAGAAGGACAGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig143629:134..430+

>mRNA_H-elongata_contig143629.3004.1 ID=mRNA_H-elongata_contig143629.3004.1|Name=mRNA_H-elongata_contig143629.3004.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig143629:134..430+ (Himanthalia elongata Himel1 dioecious)
GATGTTGTTGGACTGCAGGAGACAAAACAGGACGGAGCATCTGAAATAAC
TGCATCTGAATACCGGGTCTACTTCAGTGGTAACTGCAACGGGGTTAAAG
GGAAAAGAGGGCAACATGGGGTGGGACTAGCGATAAAGGAGGAGATCGTT
AACGAGGCCGGCAAGGACGACATCGCAATCGAGTACATCAGCGCACGTTT
CCTGAAGGCTCGAATATCGATTAAATATAATTTTGTTACGTTTGTGGTAG
CATACGCTCCGACCGAGGAAGCGACGGGAGAGCAGAAGGACAGTTAAGAT
GTTGTTGGACTGCAGGAGACAAAACAGGACGGAGCATCTGAAATAACTGC
ATCTGAATACCGGGTCTACTTCAGTGGTAACTGCAACGGGGTTAAAGGGA
AAAGAGGGCAACATGGGGTGGGACTAGCGATAAAGGAGGAGATCGTTAAC
GAGGCCGGCAAGGACGACATCGCAATCGAGTACATCAGCGCACGTTTCCT
GAAGGCTCGAATATCGATTAAATATAATTTTGTTACGTTTGTGGTAGCAT
ACGCTCCGACCGAGGAAGCGACGGGAGAGCAGAAGGACAGTTAA
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