mRNA_H-elongata_contig143616.3003.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig143616.3003.1
Unique Name	mRNA_H-elongata_contig143616.3003.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig143616.3003.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 6.900e-40
Identity = 75/113 (66.37%), Postives = 87/113 (76.99%), Query Frame = 1

Query:    1 GGNVVNACRMLDVEVIKCNAHCLNSAIMWALRICDSVKKCENPEMEKLMKKLAALVGVFSHSGVNNDEFKHSQTDLLTEVFDKVLKLIRRNDTRWTTQHAVMARILNLKKPLM 339
            GGNVVNACR LDVEV+KCNAH LNS  MWAL I  S++  ENP MEKLMK+LAA+VGVFSHS VNNDE K  Q   L E F  + +LIRRNDTRW +QHA+M R+L LKK ++
Sbjct:   30 GGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQR--LQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIV 140

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BLAST of mRNA_H-elongata_contig143616.3003.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 5.670e-39
Identity = 75/113 (66.37%), Postives = 87/113 (76.99%), Query Frame = 1

Query:    1 GGNVVNACRMLDVEVIKCNAHCLNSAIMWALRICDSVKKCENPEMEKLMKKLAALVGVFSHSGVNNDEFKHSQTDLLTEVFDKVLKLIRRNDTRWTTQHAVMARILNLKKPLM 339
            GGNVVNACR LDVEV+KCNAH LNS  MWAL I  S++  ENP MEKLMK+LAA+VGVFSHS VNNDE K  Q   L E F  + +LIRRNDTRW +QHA+M R+L LKK ++
Sbjct:  358 GGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQR--LQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIV 468

[Close]

BLAST of mRNA_H-elongata_contig143616.3003.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 6.610e-30
Identity = 65/112 (58.04%), Postives = 80/112 (71.43%), Query Frame = 1

Query:    1 GGNVVNACRMLDVEVIKCNAHCLNSAIMWALRICDSVKKCENPEMEKLMKKLAALVGVFSHSGVNNDEFKHSQTDLLTEVFDKVLKLIRRNDTRWTTQHAVMARILNLKKPL 336
            GGNVVNAC+ L V V+KCN H +N+A++WAL I  + ++  N  M  LMKKLAALVGVFSHS VNND+ K  Q   L E    V +LIRRNDTRWT+Q  +M R+L LKKP+
Sbjct:  368 GGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGRR--NKVMGDLMKKLAALVGVFSHSAVNNDKLKELQR--LEEDLHAVYQLIRRNDTRWTSQFKMMDRLLALKKPI 475

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BLAST of mRNA_H-elongata_contig143616.3003.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 9.030e-30
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1

Query:    1 GGNVVNACRMLDVEVIKCNAHCLNSAIMWALRICDSVKKCENPEMEKLMKKLAALVGVFSHSGVNNDEFKHSQTDLLTEVFDKVLKLIRRNDTRWTTQHAVMARILNLKKPL 336
            G N++NAC  L V V++CN H LN+A++WAL I    +   NP M  LMKKLAA+VGVFSHS VNNDE K  Q   L E F ++ +L+RRNDTRWT+Q  +M R+L LKKP+
Sbjct:  370 GKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQR--LEEGFSRIYELLRRNDTRWTSQFKMMDRVLALKKPI 477

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BLAST of mRNA_H-elongata_contig143616.3003.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.930e-29
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 1

Query:    1 GGNVVNACRMLDVEVIKCNAHCLNSAIMWALRICDSVKKCENPEMEKLMKKLAALVGVFSHSGVNNDEFKHSQTDLLTEVFDKVLKLIRRNDTRW-TTQHAVMARILNLKKPL 336
            G N++NAC  LDV V++CN H +N+A++WAL I  + K  +NP M  LMKKLAA+VGVFSHS VNNDE K  Q   L E F ++ +L+RRNDTRW T+Q  +M R L LKKP+
Sbjct:   19 GKNIINACTALDVTVVECNCHRVNTAVVWALGI--AAKGRKNPTMGTLMKKLAAMVGVFSHSAVNNDELKELQR--LEEGFSRIYELLRRNDTRWWTSQLKMMDRALALKKPI 127

[Close]

BLAST of mRNA_H-elongata_contig143616.3003.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 6.970e-29
Identity = 61/112 (54.46%), Postives = 78/112 (69.64%), Query Frame = 1

Query:    1 GGNVVNACRMLDVEVIKCNAHCLNSAIMWALRICDSVKKCENPEMEKLMKKLAALVGVFSHSGVNNDEFKHSQTDLLTEVFDKVLKLIRRNDTRWTTQHAVMARILNLKKPL 336
            G N++NAC  L V V++CN H LN+A++WAL I    +   NP M  LMKKLAA+VGVFSHS VNNDE K  Q   L E F ++ +L+R NDTRWT+Q  +M R+L LKKP+
Sbjct:  175 GKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQR--LEEGFSRIYELLRPNDTRWTSQFKMMDRVLALKKPI 282

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BLAST of mRNA_H-elongata_contig143616.3003.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.760e-28
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 1

Query:    1 GGNVVNACRMLDVEVIKCNAHCLNSAIMWALRICDSVKKCENPEMEKLMKKLAALVGVFSHSGVNNDEFKHSQTDLLTEVFDKVLKLIRRNDTRWTTQHAVMARILNLKKPL 336
            G NVVNAC  L V V++CN H +NSA++WAL I  SV  C+N    K MKKLAALVGVFSHS VNND  K  Q   L     ++ + IRRNDTRWT+Q  +M R+L LKKP+
Sbjct:  179 GKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKN----KPMKKLAALVGVFSHSAVNNDMLKELQR--LEADLHRIYETIRRNDTRWTSQQKMMGRLLILKKPI 284

[Close]

BLAST of mRNA_H-elongata_contig143616.3003.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 6.240e-28
Identity = 62/112 (55.36%), Postives = 75/112 (66.96%), Query Frame = 1

Query:    1 GGNVVNACRMLDVEVIKCNAHCLNSAIMWALRICDSVKKCENPEMEKLMKKLAALVGVFSHSGVNNDEFKHSQTDLLTEVFDKVLKLIRRNDTRWTTQHAVMARILNLKKPL 336
            G NVVNAC  L V V++CN H +NSA++WAL I  S   C+N    K MKKLAALVGVFSHS VNND  K  Q   L     ++ + IRRNDTRWT+Q  +M R+L LKKP+
Sbjct:  179 GKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKN----KPMKKLAALVGVFSHSAVNNDMLKELQR--LEADLHRIYETIRRNDTRWTSQQKMMGRLLILKKPI 284

[Close]

BLAST of mRNA_H-elongata_contig143616.3003.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 6.900e-26
Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = 1

Query:    1 GGNVVNACRMLDVEVIKCNAHCLNSAIMWALRICDSVKKCENPEMEKLMKKLAALVGVFSHSGVNN--DEFKHSQTDLLTEVFDKVLKLIRRNDTRWTTQHAVMARILNLKKPL 336
            GGNVVNAC  L V+V+KCN H +NSA++WAL I  S   C N +M  LMKKLAALVGVFS S VNN   E +  +TDL      ++ +L+RRNDT   +Q  +M R+L LKKP+
Sbjct:   34 GGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKLAALVGVFSPSAVNNMLKELQRLETDL-----HRIYELMRRNDT---SQFKMMGRLLTLKKPI 139

[Close]

BLAST of mRNA_H-elongata_contig143616.3003.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.480e-18
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = 1

Query:    1 GGNVVNACRMLDVEVIKCNAHCLNSAIMWALRICDSVKKCENPEMEKLMKKLAALVGVFSHSGVNNDEFKHSQTDLLTEVFDKVLKLIRRNDTRWTTQHAVMARILNLKKPL 336
            G N+VNA   L V V++CN H +NSA++WAL I    + C+N  M  LMKKLAA VGVFSHS VNND  K  Q   L     +V +        WT+Q  +M R+L L K +
Sbjct:  176 GKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKLAASVGVFSHSAVNNDMLKEIQR--LEADLHRVYE--------WTSQFRMMVRLLILNKAI 277

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig143616.3003.1 vs. uniprot

BLAST of mRNA_H-elongata_contig143616.3003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
A0A6H5KAN7_9PHAE	6.900e-40	66.37	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KJ52_9PHAE	5.670e-39	66.37	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JRT6_9PHAE	6.610e-30	58.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JGG8_9PHAE	9.030e-30	55.36	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]
A0A6H5KAS2_9PHAE	1.930e-29	55.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTB8_9PHAE	6.970e-29	54.46	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JZU3_9PHAE	1.760e-28	56.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQI6_9PHAE	6.240e-28	55.36	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDJ6_9PHAE	6.900e-26	53.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXV5_9PHAE	2.480e-18	45.54	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig143616	contig	H-elongata_contig143616:955..1539 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	339
Cds size	312
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig143616.3003.1	prot_H-elongata_contig143616.3003.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig143616 982..1539 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929851.9473398-UTR-H-elongata_contig143616:954..981	1622929851.9473398-UTR-H-elongata_contig143616:954..981	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig143616 955..981 +
1691679183.3734794-UTR-H-elongata_contig143616:954..981	1691679183.3734794-UTR-H-elongata_contig143616:954..981	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig143616 955..981 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929851.965979-CDS-H-elongata_contig143616:981..1235	1622929851.965979-CDS-H-elongata_contig143616:981..1235	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig143616 982..1235 +
1691679183.3821228-CDS-H-elongata_contig143616:981..1235	1691679183.3821228-CDS-H-elongata_contig143616:981..1235	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig143616 982..1235 +
1622929851.9779193-CDS-H-elongata_contig143616:1481..1539	1622929851.9779193-CDS-H-elongata_contig143616:1481..1539	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig143616 1482..1539 +
1691679183.395545-CDS-H-elongata_contig143616:1481..1539	1691679183.395545-CDS-H-elongata_contig143616:1481..1539	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig143616 1482..1539 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig143616:955..1539+
coding sequence from alignment at H-elongata_contig143616:955..1539+

protein sequence of mRNA_H-elongata_contig143616.3003.1

>prot_H-elongata_contig143616.3003.1 ID=prot_H-elongata_contig143616.3003.1|Name=mRNA_H-elongata_contig143616.3003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MLDVEVIKCNAHCLNSAIMWALRICDSVKKCENPEMEKLMKKLAALVGVF
SHSGVNNDEFKHSQTDLLTEVFDKVLKLIRRNDTRWTTQHAVMARILNLK
KPLM

mRNA from alignment at H-elongata_contig143616:955..1539+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig143616.3003.1 ID=mRNA_H-elongata_contig143616.3003.1|Name=mRNA_H-elongata_contig143616.3003.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=585bp|location=Sequence derived from alignment at H-elongata_contig143616:955..1539+ (Himanthalia elongata Himel1 dioecious)
GGTGGTAACGTGGTTAACGCGTGCAGAATGTTGGACGTTGAGGTCATCAA
ATGTAACGCCCATTGCCTCAACTCCGCCATTATGTGGGCGCTGAGGATAT
GCGATTCAGTCAAGAAGTGTGAAAATCCGGAGATGGAAAAGCTGATGAAG
AAACTGGCGGCGCTTGTAGGGGTTTTCAGCCATTCTGGTGTCAACAACGA
TGAGTTCAAGCACAGTCAGACCGATTTACTTACGGAGGTTTTCGACAAAG
TTCTCAAGCTCATCAGGCGCAATGACACGAGGTGATCTAGTCCTAATTAC
TAATTACCAGCTGCTGATTACCAGTAGAAACTTCGAGAACGCCATGCCAA
ATCTATCCTGTGTATTGCTGGTTTTGTATTTTGTATTTTGTATTTTTCTG
GTATTTTTGTTTTTTTTTGCATTGCTCACTCGTATGGTGCTTACGACTTA
TATACTTTCTTGTTCAGACCCTGAACCCTGCCCCCGCCCCTCCCTTCTCG
TCATTATTGCGACATCTTGGCCAACAGGTGGACCACGCAACATGCCGTGA
TGGCCCGGATACTCAACCTGAAAAAGCCCCTCATG

Coding sequence (CDS) from alignment at H-elongata_contig143616:955..1539+

>mRNA_H-elongata_contig143616.3003.1 ID=mRNA_H-elongata_contig143616.3003.1|Name=mRNA_H-elongata_contig143616.3003.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig143616:955..1539+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGACGTTGAGGTCATCAAATGTAACGCCCATTGCCTCAACTCCGC
CATTATGTGGGCGCTGAGGATATGCGATTCAGTCAAGAAGTGTGAAAATC
CGGAGATGGAAAAGCTGATGAAGAAACTGGCGGCGCTTGTAGGGGTTTTC
AGCCATTCTGGTGTCAACAACGATGAGTTCAAGCACAGTCAGACCGATTT
ACTTACGGAGGTTTTCGACAAAGTTCTCAAGCTCATCAGGCGCAATGACA
CGAGATGTTGGACGTTGAGGTCATCAAATGTAACGCCCATTGCCTCAACT
CCGCCATTATGTGGGCGCTGAGGATATGCGATTCAGTCAAGAAGTGTGAA
AATCCGGAGATGGAAAAGCTGATGAAGAAACTGGCGGCGCTTGTAGGGGT
TTTCAGCCATTCTGGTGTCAACAACGATGAGTTCAAGCACAGTCAGACCG
ATTTACTTACGGAGGTTTTCGACAAAGTTCTCAAGCTCATCAGGCGCAAT
GACACGAGGTGGACCACGCAACATGCCGTGATGGCCCGGATACTCAACCT
GAAAAAGCCCCTCATGGTGGACCACGCAACATGCCGTGATGGCCCGGATA
CTCAACCTGAAAAAGCCCCTCATG