prot_H-elongata_contig14361.3002.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14361.3002.1
Unique Nameprot_H-elongata_contig14361.3002.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length191
Homology
BLAST of mRNA_H-elongata_contig14361.3002.1 vs. uniprot
Match: D7FK79_ECTSI (Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK79_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 5.140e-71
Identity = 109/180 (60.56%), Postives = 143/180 (79.44%), Query Frame = 0
Query:   12 MVARGVQPTSMTLSNVIMAQSWVSPADMYRTLAEMDEKGWVPNRGTHLCLIAAMWQRKDSKGVVDMMRRMLEQDYQPTEATFAMSIMAASRLGNADFAKEIFARRTAAGLEPKEEIYSSMMVAHSKGNLHEECLGYWRQLVCVEGIGGVRINLETYHCAMKSAVTMGHWSEVEAILDMMK 191
            MV++G++P  +TLS++ MAQ+W S  DMYRTLAEMDE+GW P R  HL  IA MWQRKD++GV+ M+ RMLE+ YQPTEA FAM++M+A RLG AD AK +F  R+ +GLEPK+EIYSSMM+AHSK +LHEE L YWRQLVC++G+GGV I+LET   A++SA+   HW EV+ I+ M++
Sbjct:    1 MVSKGLEPDVLTLSHLAMAQAWGSSNDMYRTLAEMDERGWTPTRAAHLSAIAFMWQRKDTEGVLQMIERMLEKSYQPTEAAFAMALMSAGRLGRADLAKVLFEWRSESGLEPKQEIYSSMMLAHSKADLHEESLAYWRQLVCLDGVGGVAIDLETCRSALRSAIVSDHWDEVDTIVGMLR 180          
BLAST of mRNA_H-elongata_contig14361.3002.1 vs. uniprot
Match: A0A6H5KYF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF7_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.200e-39
Identity = 85/184 (46.20%), Postives = 112/184 (60.87%), Query Frame = 0
Query:    8 VYEEMVARGVQPTSMTLSNVIMAQSWVSPADMYRTLAEMDEKGWVPNRGTHLCLIAAMWQRKDSKGVVDMMRRMLEQDYQPTEATFAMSIMAASRLGNADFAKEIFARRTAAGLEPKEEIYSSMMVAHSKGNLHEECLGYWRQLVCVEGIGGVRINLETYHCAMKSAVTMGHWSEVEAILDMMK 191
            VYEEM++RGV+P   T S++I+A S      MYR + EM  KGW  +R   L +IA M  R+D  GV+  +RRM E+   PTEA F  +  AA  LG  + AK++F  R  AGL P E +Y  MM    K    EECL YWRQLVCV G  GV I+ ETY+ A+K  + +G+  E+EA+L MM+
Sbjct:  214 VYEEMLSRGVEPNQRTASHMIVAHSRGCHDAMYRAVEEMYAKGWQGSRVACLGMIAVMGIRRDYDGVLYTIRRMREESKLPTEAAFVWAYRAAENLGQVETAKQLFQHRAEAGLPPAEYVYVKMMSILMKAGKAEECLEYWRQLVCVHGFNGVVIHPETYNLAIKCTMVVGNQDEMEAVLAMME 397          
BLAST of mRNA_H-elongata_contig14361.3002.1 vs. uniprot
Match: D8LG81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG81_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.150e-38
Identity = 83/184 (45.11%), Postives = 113/184 (61.41%), Query Frame = 0
Query:    8 VYEEMVARGVQPTSMTLSNVIMAQSWVSPADMYRTLAEMDEKGWVPNRGTHLCLIAAMWQRKDSKGVVDMMRRMLEQDYQPTEATFAMSIMAASRLGNADFAKEIFARRTAAGLEPKEEIYSSMMVAHSKGNLHEECLGYWRQLVCVEGIGGVRINLETYHCAMKSAVTMGHWSEVEAILDMMK 191
            V+EEM++RGV+P   T S++I+A S      MYR + EM  KGW  +R   L +IA M  R+D  GV+  +RRM E+   PTEA F  +  AA  LG  + AK++F  R  AGL P E +Y  MM+   K    EECL YWRQLVCV G+ GV I+ ETY+ A+K  + + +  E+EA+L MM+
Sbjct:  214 VHEEMLSRGVEPNQRTASHMIVAHSRGCHDTMYRAVEEMYAKGWQGSRTACLGMIAVMGFRRDYDGVLYTIRRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFHHRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWRQLVCVHGLNGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMME 397          
BLAST of mRNA_H-elongata_contig14361.3002.1 vs. uniprot
Match: D7FK81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK81_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.280e-24
Identity = 53/139 (38.13%), Postives = 91/139 (65.47%), Query Frame = 0
Query:   53 PNRGTHLCLIAAMWQRKDSKGVVDMMRRMLEQDYQPTEATFAMSIMAASRLGNADFAKEIFARRTAAGLEPKEEIYSSMMVAHSKGNLHEECLGYWRQLVCVEGIGGVRINLETYHCAMKSAVTMGHWSEVEAILDMMK 191
            P +  +  +I+ +   +D +G++  +  MLE++  PTEA FA+  M A +LG+ +FAK +  RR+ AG+ P+++ + ++MV   +    E+ L YWR+LVCV+GI G+ I  ET++ A+++AV +  W EVEAI+ MM+
Sbjct:    3 PTKVAYQSMISGLRIGEDWQGILTTINEMLEEEVVPTEAGFAVGFMTARKLGDVEFAKMLLERRSQAGMPPRQDFFVNVMVTLGEAGKPEDFLEYWRRLVCVQGIDGLGIRPETFYLALRTAVKIKAWDEVEAIIGMMQ 141          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14361.3002.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK79_ECTSI5.140e-7160.56Pentatricopeptide repeat-containing protein, putat... [more]
A0A6H5KYF7_9PHAE3.200e-3946.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG81_ECTSI2.150e-3845.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK81_ECTSI2.280e-2438.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..157
e-value: 3.2E-22
score: 81.3
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 36..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14361contigH-elongata_contig14361:5080..7470 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14361.3002.1mRNA_H-elongata_contig14361.3002.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14361 5053..7470 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14361.3002.1 ID=prot_H-elongata_contig14361.3002.1|Name=mRNA_H-elongata_contig14361.3002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
MAAKANRVYEEMVARGVQPTSMTLSNVIMAQSWVSPADMYRTLAEMDEKG
WVPNRGTHLCLIAAMWQRKDSKGVVDMMRRMLEQDYQPTEATFAMSIMAA
SRLGNADFAKEIFARRTAAGLEPKEEIYSSMMVAHSKGNLHEECLGYWRQ
LVCVEGIGGVRINLETYHCAMKSAVTMGHWSEVEAILDMMK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf