mRNA_H-elongata_contig100.2.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100.2.1
Unique NamemRNA_H-elongata_contig100.2.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100contigH-elongata_contig100:22499..22850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size353
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929542.775304-UTR-H-elongata_contig100:22498..225411622929542.775304-UTR-H-elongata_contig100:22498..22541Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100 22499..22541 +
1691679060.6894937-UTR-H-elongata_contig100:22498..225411691679060.6894937-UTR-H-elongata_contig100:22498..22541Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100 22499..22541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929542.7906237-CDS-H-elongata_contig100:22541..228501622929542.7906237-CDS-H-elongata_contig100:22541..22850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100 22542..22850 +
1691679060.7172935-CDS-H-elongata_contig100:22541..228501691679060.7172935-CDS-H-elongata_contig100:22541..22850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100 22542..22850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100.2.1prot_H-elongata_contig100.2.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100 22542..22850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100.2.1

>prot_H-elongata_contig100.2.1 ID=prot_H-elongata_contig100.2.1|Name=mRNA_H-elongata_contig100.2.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MYRGRTTLNGWICGHAFTGTGSGNYFFLRQAHLSFVLTIPTTDRLPLTLS
FRSLISAFHGIAQRLSRASMRTAASTSCTKKRKRRQEHCQWVLCVLCKWL
TLQ
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mRNA from alignment at H-elongata_contig100:22499..22850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100.2.1 ID=mRNA_H-elongata_contig100.2.1|Name=mRNA_H-elongata_contig100.2.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=352bp|location=Sequence derived from alignment at H-elongata_contig100:22499..22850+ (Himanthalia elongata Himel1 dioecious)
CATTAACCGCGGTTTCTAAAGGTTATTGCTTGTTCTTAGGGAGATGTATA
GGGGTAGGACGACCTTAAACGGCTGGATCTGCGGTCACGCTTTCACAGGA
ACAGGAAGTGGCAATTACTTTTTCCTGCGCCAGGCACACTTGTCGTTTGT
CCTAACCATACCTACGACGGATCGCTTGCCCTTAACCCTTTCTTTTCGTT
CGCTAATCTCGGCCTTTCATGGAATCGCACAACGGTTAAGCCGAGCGTCC
ATGCGGACGGCAGCATCTACTTCGTGCACCAAGAAACGAAAGAGACGACA
AGAACATTGCCAGTGGGTGCTGTGCGTGCTCTGCAAGTGGCTAACACTAC
AA
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Coding sequence (CDS) from alignment at H-elongata_contig100:22499..22850+

>mRNA_H-elongata_contig100.2.1 ID=mRNA_H-elongata_contig100.2.1|Name=mRNA_H-elongata_contig100.2.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig100:22499..22850+ (Himanthalia elongata Himel1 dioecious)
ATGTATAGGGGTAGGACGACCTTAAACGGCTGGATCTGCGGTCACGCTTT
CACAGGAACAGGAAGTGGCAATTACTTTTTCCTGCGCCAGGCACACTTGT
CGTTTGTCCTAACCATACCTACGACGGATCGCTTGCCCTTAACCCTTTCT
TTTCGTTCGCTAATCTCGGCCTTTCATGGAATCGCACAACGGTTAAGCCG
AGCGTCCATGCGGACGGCAGCATCTACTTCGTGCACCAAGAAACGAAAGA
GACGACAAGAACATTGCCAGTGGGTGCTGTGCGTGCTCTGCAAGTGGCTA
ACACTACAAATGTATAGGGGTAGGACGACCTTAAACGGCTGGATCTGCGG
TCACGCTTTCACAGGAACAGGAAGTGGCAATTACTTTTTCCTGCGCCAGG
CACACTTGTCGTTTGTCCTAACCATACCTACGACGGATCGCTTGCCCTTA
ACCCTTTCTTTTCGTTCGCTAATCTCGGCCTTTCATGGAATCGCACAACG
GTTAAGCCGAGCGTCCATGCGGACGGCAGCATCTACTTCGTGCACCAAGA
AACGAAAGAGACGACAAGAACATTGCCAGTGGGTGCTGTGCGTGCTCTGC
AAGTGGCTAACACTACAA
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