mRNA_H-elongata_contig14346.2995.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14346.2995.1
Unique NamemRNA_H-elongata_contig14346.2995.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14346.2995.1 vs. uniprot
Match: D8LLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ4_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.260e-44
Identity = 240/403 (59.55%), Postives = 275/403 (68.24%), Query Frame = 1
Query:    1 GHADVVRLLIEQHGASVDARDGALCTALHAASEGGHPVVVELLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPSSRDANGMQAIDMIGVKRQISKEVRSNFLHTLERYILGDFASARAPLSSAKSLRQVQVWRGRDD--------VARVSFAASEAPMGV--------------------------------------RANSSLARGVTAPYDGFSTVAGGGGVKEGKLGGFGGRVGAPRGSGDGRSEGFRAAGELERGKLGVEEVGGRSPRWSVGTAVAGRLEEMRARELGASLRAKVQENEAMKRHLDSVKEEMRMLQRKVLEQS 1071
            GH +VV+LL+E+H A+VDARDGALCT LHAASEGGHPVVVELLLR    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPS++DA+G QAIDM+G  R+I + +R + ++TLERY +G++A ARAPLSS +SLRQ+  WR RD          AR     S A  G                                           S++R  +   DGFST + G        GG GG   + RG+    S    + G+             RSPRW+VG AVAGRLE MRARELGASLRAKVQENEAMKR+++SV EEMR LQ+K+ +QS
Sbjct:    2 GHTNVVKLLVEEHRAAVDARDGALCTPLHAASEGGHPVVVELLLRLGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPSAKDAHGKQAIDMVGAGRRIPQGLRFDIINTLERYQMGEYAIARAPLSSTRSLRQM--WRDRDSGESTPRASTARAGSLPSSAVGGAGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIYSSRGGSISRKGSMSLDGFSTASMG-------AGGEGGGPLSVRGAAMRHSSRGFSEGDXXXXXXXXXXXXXRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVTEEMRALQQKISQQS 395          
BLAST of mRNA_H-elongata_contig14346.2995.1 vs. uniprot
Match: A0A6H5JD62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD62_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 4.710e-28
Identity = 102/242 (42.15%), Postives = 128/242 (52.89%), Query Frame = 1
Query:  439 ADPSSRDANGMQAIDMIGVKRQISKEVRSNFLHTLERYILGDFASARAPLSSAKSLRQVQVWRGRDD---VARVSFA-ASEAPMGVRANS-----------------------------------------SLARGVTAPYDGFSTVA-GGGGVKEGKLGGFGGRVGAPRGSGDGRSEGFRAAGELERGKLGVEEVGGRSPRWSVGTAVAGRLEEMRARELGASLRAKVQENEAMKRHLDSV 1026
            ADPS++DA+G QA+DM+G  R+I + ++ + ++TLERY +G++  ARAPLSS +SLRQ+  WR RD      R S A A   P G    +                                         S++R  +   DGFST + G GG   G L     R  A R S  G SEG            G    GGRSPRW+VG AVAGRLE MRARELGASLRAKVQENEAMKR+++SV
Sbjct:  270 ADPSAKDAHGKQAVDMVGAGRRIPQGLKFDIINTLERYQMGEYGIARAPLSSTRSLRQI--WRDRDSGESTPRASTARAGSLPSGAGGEAGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIYSSRGGSISRKGSMSLDGFSTASMGAGGEGGGPLSV---RGAAMRHSSRGFSEGD-----------GRGNGGGRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESV 495          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14346.2995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLZ4_ECTSI1.260e-4459.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD62_9PHAE4.710e-2842.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14346contigH-elongata_contig14346:4544..8004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.5
Seed ortholog evalue9.1e-41
Seed eggNOG ortholog2880.D8LLZ4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-14_002230.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1083
Cds size1083
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14346.2995.1prot_H-elongata_contig14346.2995.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14346 4544..8004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929851.0132074-CDS-H-elongata_contig14346:4543..45971622929851.0132074-CDS-H-elongata_contig14346:4543..4597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14346 4544..4597 -
1691679182.9901516-CDS-H-elongata_contig14346:4543..45971691679182.9901516-CDS-H-elongata_contig14346:4543..4597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14346 4544..4597 -
1622929851.0279849-CDS-H-elongata_contig14346:4992..54431622929851.0279849-CDS-H-elongata_contig14346:4992..5443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14346 4993..5443 -
1691679183.0146105-CDS-H-elongata_contig14346:4992..54431691679183.0146105-CDS-H-elongata_contig14346:4992..5443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14346 4993..5443 -
1622929851.0441148-CDS-H-elongata_contig14346:5803..59071622929851.0441148-CDS-H-elongata_contig14346:5803..5907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14346 5804..5907 -
1691679183.0275545-CDS-H-elongata_contig14346:5803..59071691679183.0275545-CDS-H-elongata_contig14346:5803..5907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14346 5804..5907 -
1622929851.0593424-CDS-H-elongata_contig14346:6495..66181622929851.0593424-CDS-H-elongata_contig14346:6495..6618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14346 6496..6618 -
1691679183.0378969-CDS-H-elongata_contig14346:6495..66181691679183.0378969-CDS-H-elongata_contig14346:6495..6618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14346 6496..6618 -
1622929851.0793924-CDS-H-elongata_contig14346:6940..70941622929851.0793924-CDS-H-elongata_contig14346:6940..7094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14346 6941..7094 -
1691679183.0471973-CDS-H-elongata_contig14346:6940..70941691679183.0471973-CDS-H-elongata_contig14346:6940..7094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14346 6941..7094 -
1622929851.0921452-CDS-H-elongata_contig14346:7807..80041622929851.0921452-CDS-H-elongata_contig14346:7807..8004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14346 7808..8004 -
1691679183.064864-CDS-H-elongata_contig14346:7807..80041691679183.064864-CDS-H-elongata_contig14346:7807..8004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14346 7808..8004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14346.2995.1

>prot_H-elongata_contig14346.2995.1 ID=prot_H-elongata_contig14346.2995.1|Name=mRNA_H-elongata_contig14346.2995.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=361bp
GHADVVRLLIEQHGASVDARDGALCTALHAASEGGHPVVVELLLRFGAEI
DARNGKGQTPLHYACGYGQVDAAQQLTLRGASTGARDIQGNTPLHLACSG
GEADIVRLLLVNGSPLQAVNHRGRRPLHLACRSGYLDIAIALLENGADPS
SRDANGMQAIDMIGVKRQISKEVRSNFLHTLERYILGDFASARAPLSSAK
SLRQVQVWRGRDDVARVSFAASEAPMGVRANSSLARGVTAPYDGFSTVAG
GGGVKEGKLGGFGGRVGAPRGSGDGRSEGFRAAGELERGKLGVEEVGGRS
PRWSVGTAVAGRLEEMRARELGASLRAKVQENEAMKRHLDSVKEEMRMLQ
RKVLEQSSARS
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mRNA from alignment at H-elongata_contig14346:4544..8004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14346.2995.1 ID=mRNA_H-elongata_contig14346.2995.1|Name=mRNA_H-elongata_contig14346.2995.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3461bp|location=Sequence derived from alignment at H-elongata_contig14346:4544..8004- (Himanthalia elongata Himel1 dioecious)
GGCCACGCGGACGTCGTCAGGCTTTTGATCGAGCAGCACGGCGCTTCGGT AGACGCCAGAGATGGCGCGCTTTGCACAGCCCTCCATGCCGCCAGCGAGG GTGGTCATCCCGTCGTGGTCGAGCTCCTGCTCCGCTTCGGTGCCGAAATC GACGCGCGCAATGGCAAGGGGCAGACACCACTTCACTACGCCTGTGGGTG AGTCAAGTTTCAGTGTGTGTGTGTTTTAGCTGCCGTTCCTGCTTGTAAGA TCGACAGCGCATGGAATCGGAACGGGCCCGTCGGTTGATTTGGGGTCTAC CGGCAAGTACTTGCTATTATGTTATGTACTAATATATATATATTGTATAT AGTATATAGTATATTTATTATGGTCATCACATATTATAGCAGAGTAAGAT CAACCGGATTTGATTGCCTTCTGCTCGTGGTCAGCTGAACAGGGGACATA ATTTCCCCCCTGTCGTCCCCGTTCGCGCCTGAGAACTTGATCTCGCGAGA CGGGTTCAGCAGTCTCGTCCTGCGTTAGCCTGCTCATTCTCTCAACACAG GCTGAATCTGGTGCTTCCTCCCGGGATTCTCTCGATCCTCCCGTTCTCCG CGACGGCGTCCATCTCTACCGTTAACCGCCATTGGGCCAATCGCGACTTC ATCAAGTCACGCAATTTGCGTACCGATGACATTTATTATCGAGTCCGCCG GCACTGAGCCTATAGTCCTCAAGGTAGCTTGAGTAACGGGTGCAGCCTAT TGAGATAACCCCATGGACCAATTGTTGTACACCTCGCTTTTCCCACACCA CATTACTCTACTGTAGAAGGCAGCTGTAACATGTTAAATATTATACCTGA TATATCATACTACTGTTGAAGATAGATACAGCTTGTTGTTATTATTGTTG ACGTTATCAGGTACGGGCAGGTGGATGCGGCGCAACAGCTAACGCTTCGC GGAGCGTCCACGGGTGCGCGAGACATACAAGGAAATACGCCGCTGCACCT GGCGTGCAGCGGGGGCGAGGCTGACATCGTACGACTCCTCTTGGTGAATG GCTCGCCTCTGCAGGTGACGAGAGAAGCACACGCAGACAGACACTAGCGA GTACATCACGGTGAGAAGCTTTGCGTCTCATTGTTGCCATGACTTGGGAA GGCAGGCGTTTTGCGGACGAAAGCGTTCGGCGCGCGGTCACACGACGGTT GAGTTTTCGTAGTGACAACTGTGGTGATCGCACCATGCTTGTTCAGCTAG GCTGGGTTAAGTCGGCACCAGGATTGACGTCACCATCCACTCAATGCTCT TTGTAAAGTGACGCGAAGAAGTGATGGATGTCAGCAGCCCCCGTGGACTC GCTGTGCGGTCGTTATCTGTCGGGCGTATCTACCAGGCGGTCAATCACCG CGGCAGGCGGCCGCTGCACCTCGCGTGCCGCTCCGGGTACCTCGACATCG CGATCGCGCTGCTGGAGAATGGGGCCGATCCGTCGTCGAGGGACGCTAAT GGCATGCAGGTCGGGAAAGGGACAAAATGTCCTGGGTGTGACTGCGCGCG TATGATTGTAGTACAGTATTGCCGTGCTCTAGTATTATACTAGTCGTAGT TGTATCAGTAGCAGTTTTATATTGAAGGAAATTACCGCTCGAAGGTAGGG GGGAGGGGGGAGGGATCCGTCGAGAAGACGATGGTGACGGGATCGAGCAA TGATCGTCTGGGTGTGGGGGGGGGGGGGGGGGGAGGGGGGGGAGATTGAG GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGTGCCGTCGAGAA GACGATGGTGACGGGATCGAGCAATGATCGTCTGCGTGTATGGTAGTCGC GTGACCGTATGTGCTTCTATGGGCGTGCAGTACGATAGAAACCCGCCCCC CAGATTTTCGATCGCTGCACCGCGGAGGAGCCTTTCTGCGCAGAGGACAC CTCAAGCAATTTATTATACATATATATTTCCCTGATGATTTGGAACGATT GAAGTAGGGGGGAGGGGGGGGCTCTCTCGTCTCTTAATTTCTCGTTTTTG CCTCTGCCTTACGCTTGCTGTTCTTAACTTGTTTTAACTCGCGACAGGCG ATCGACATGATCGGGGTAAAACGGCAAATCTCGAAGGAAGTGCGATCCAA CTTCTTACACACGCTGGAGAGGTACATACTGGGTGACTTCGCGTCTGCGA GGTGAGAGAGGTGGTAGGCGTTCCTGACATAGCGGGACGACGCATGGTGT GGTGCGGTGCACTTCGCGACGATACGATACGGGATGCTGCAATAAGAGAC CACGAATGGTGGGAGCGGTGGCAAAGCGCAGTCGTTTCGTGTTTTCTTCT TCTTTCGATTCTTGCTTTTAGCAAATAAAAAAAAGAGCTGGTGACTTGAC TCGCAATACCCATTCTTGCTTGCTAATGTAATTTTCTGCTTGTCTTTCGC TTCCCAGAGTGCCGCGATCCCTTGGTGAGTGTGATGGGTGATAACGATCC CGGCTGGCGTTTTTTTACGGCGCCGCCTTACACCCTACCTCGTCCGCGCG GCACGTGGCAGGGCACCCCTGAGCTCGGCGAAGTCGCTTCGGCAAGTTCA GGTGTGGAGGGGCCGCGATGACGTAGCACGGGTAAGCTTCGCCGCTTCGG AAGCGCCCATGGGTGTACGCGCGAACTCCTCCCTAGCGAGAGGAGTGACG GCGCCGTATGACGGGTTTTCCACGGTGGCGGGAGGAGGAGGGGTGAAAGA AGGAAAACTAGGAGGCTTTGGCGGGAGAGTGGGGGCGCCGCGAGGGTCGG GAGACGGACGGAGCGAGGGCTTCCGCGCGGCGGGGGAGCTGGAAAGGGGC AAACTGGGGGTGGAAGAGGTGGGAGGGCGCAGCCCGCGATGGTCCGTGGG GACGGCGGTCGCGGGGAGGCTCGAGGAGATGAGAGCGCGCGAGCTCGGTG CCAGCCTTCGTGCCAAGGTGCAGGAGAACGAGGCCATGAAGAGGCATCTG GACTCCGTAAAGGTAGGTGTGTGATGGCGCGGCGTGTTTTTAAGACGGAG AGGTCAAGAATGCTGGTTGACGTTTACTGGCGCGTGGACCCACGCGATGC TTTTGGTTGGATTATTCGTAACGTTTCGATATGTCATCTTCGCAAGATAG GAGGTTTTGGGTTTTCGAGCGCGTTCGGAATGGAAGACGAAAATTAAGAT GGTTTCGCGAGGGGCGCTTCCGGACTCCACTACACGTTACGAATAGTCAG TACTCAATTTTTTCACTCTCGGCTCGGACACTTGTTATTTTTATTTGCTC TTGTGGTATGAGTAGCGTGCCTTGGATACCCCGGCTGCTACACACGACAC CTGTGTTCCATAGACCTGTCTTCTGAAAAGTCAAGTTACCTCCCCCTTAA AAAACAGGAAGAAATGCGAATGTTACAGCGGAAAGTTTTGGAGCAGTCAT CGGCGCGGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig14346:4544..8004-

>mRNA_H-elongata_contig14346.2995.1 ID=mRNA_H-elongata_contig14346.2995.1|Name=mRNA_H-elongata_contig14346.2995.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2166bp|location=Sequence derived from alignment at H-elongata_contig14346:4544..8004- (Himanthalia elongata Himel1 dioecious)
GGCCACGCGGACGTCGTCAGGCTTTTGATCGAGCAGCACGGCGCTTCGGT
AGACGCCAGAGATGGCGCGCTTTGCACAGCCCTCCATGCCGCCAGCGAGG
GTGGTCATCCCGTCGTGGTCGAGCTCCTGCTCCGCTTCGGTGCCGAAATC
GACGCGCGCAATGGCAAGGGGCAGACACCACTTCACTACGCCTGTGGGGC
CACGCGGACGTCGTCAGGCTTTTGATCGAGCAGCACGGCGCTTCGGTAGA
CGCCAGAGATGGCGCGCTTTGCACAGCCCTCCATGCCGCCAGCGAGGGTG
GTCATCCCGTCGTGGTCGAGCTCCTGCTCCGCTTCGGTGCCGAAATCGAC
GCGCGCAATGGCAAGGGGCAGACACCACTTCACTACGCCTGTGGGTACGG
GCAGGTGGATGCGGCGCAACAGCTAACGCTTCGCGGAGCGTCCACGGGTG
CGCGAGACATACAAGGAAATACGCCGCTGCACCTGGCGTGCAGCGGGGGC
GAGGCTGACATCGTACGACTCCTCTTGGTGAATGGCTCGCCTCTGCAGGT
ACGGGCAGGTGGATGCGGCGCAACAGCTAACGCTTCGCGGAGCGTCCACG
GGTGCGCGAGACATACAAGGAAATACGCCGCTGCACCTGGCGTGCAGCGG
GGGCGAGGCTGACATCGTACGACTCCTCTTGGTGAATGGCTCGCCTCTGC
AGGCGGTCAATCACCGCGGCAGGCGGCCGCTGCACCTCGCGTGCCGCTCC
GGGTACCTCGACATCGCGATCGCGCTGCTGGAGAATGGGGCCGATCCGTC
GTCGAGGGACGCTAATGGCATGCAGGCGGTCAATCACCGCGGCAGGCGGC
CGCTGCACCTCGCGTGCCGCTCCGGGTACCTCGACATCGCGATCGCGCTG
CTGGAGAATGGGGCCGATCCGTCGTCGAGGGACGCTAATGGCATGCAGGC
GATCGACATGATCGGGGTAAAACGGCAAATCTCGAAGGAAGTGCGATCCA
ACTTCTTACACACGCTGGAGAGGTACATACTGGGTGACTTCGCGTCTGCG
AGGCGATCGACATGATCGGGGTAAAACGGCAAATCTCGAAGGAAGTGCGA
TCCAACTTCTTACACACGCTGGAGAGGTACATACTGGGTGACTTCGCGTC
TGCGAGGGCACCCCTGAGCTCGGCGAAGTCGCTTCGGCAAGTTCAGGTGT
GGAGGGGCCGCGATGACGTAGCACGGGTAAGCTTCGCCGCTTCGGAAGCG
CCCATGGGTGTACGCGCGAACTCCTCCCTAGCGAGAGGAGTGACGGCGCC
GTATGACGGGTTTTCCACGGTGGCGGGAGGAGGAGGGGTGAAAGAAGGAA
AACTAGGAGGCTTTGGCGGGAGAGTGGGGGCGCCGCGAGGGTCGGGAGAC
GGACGGAGCGAGGGCTTCCGCGCGGCGGGGGAGCTGGAAAGGGGCAAACT
GGGGGTGGAAGAGGTGGGAGGGCGCAGCCCGCGATGGTCCGTGGGGACGG
CGGTCGCGGGGAGGCTCGAGGAGATGAGAGCGCGCGAGCTCGGTGCCAGC
CTTCGTGCCAAGGTGCAGGAGAACGAGGCCATGAAGAGGCATCTGGACTC
CGTAAAGGGCACCCCTGAGCTCGGCGAAGTCGCTTCGGCAAGTTCAGGTG
TGGAGGGGCCGCGATGACGTAGCACGGGTAAGCTTCGCCGCTTCGGAAGC
GCCCATGGGTGTACGCGCGAACTCCTCCCTAGCGAGAGGAGTGACGGCGC
CGTATGACGGGTTTTCCACGGTGGCGGGAGGAGGAGGGGTGAAAGAAGGA
AAACTAGGAGGCTTTGGCGGGAGAGTGGGGGCGCCGCGAGGGTCGGGAGA
CGGACGGAGCGAGGGCTTCCGCGCGGCGGGGGAGCTGGAAAGGGGCAAAC
TGGGGGTGGAAGAGGTGGGAGGGCGCAGCCCGCGATGGTCCGTGGGGACG
GCGGTCGCGGGGAGGCTCGAGGAGATGAGAGCGCGCGAGCTCGGTGCCAG
CCTTCGTGCCAAGGTGCAGGAGAACGAGGCCATGAAGAGGCATCTGGACT
CCGTAAAGGAAGAAATGCGAATGTTACAGCGGAAAGTTTTGGAGCAGTCA
TCGGCGCGGTCGGAAGAAATGCGAATGTTACAGCGGAAAGTTTTGGAGCA
GTCATCGGCGCGGTCG
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